Array 1 32753-33560 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUW01000207.1 Pseudomonas aeruginosa strain 515477 contig_207, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 32753 28 100.0 32 ............................ TGCCGGACCTGCTCCGCCACTGCGGACTCCAA 32813 28 100.0 32 ............................ AGTACCCGTTCTCGCCGGCCTTCGCTTCGGAC 32873 28 100.0 32 ............................ AAGTAGATCAGTCGATTGGCGAAATCCACTCT 32933 28 100.0 32 ............................ AGGGCGTGGCCAAGACCAAGGGCCACAAAGCC 32993 28 100.0 32 ............................ CGTAAAGAGTGCCCCCGGCTGGCCGCCGCTTG 33053 28 100.0 32 ............................ GTCGGCAGCGATCTTCGCCTGAAGGTCAGCGG 33113 28 100.0 32 ............................ GCGACGTTGGCCAGCGCGAAGGACCACACCAA 33173 28 100.0 32 ............................ ACCGACGCTCCGGCCTCGGCCTGGGTGGCGGG 33233 28 100.0 32 ............................ GTCCGTGGCCCATATGGGCACCTCTACCGCCG 33293 28 100.0 32 ............................ CTCGGTCGGTGCGGTTGCTGTTCTGGATCGTC 33353 28 100.0 32 ............................ ATCCAGATGGCGCGCTTCCATGCCTTCACAAC 33413 28 100.0 32 ............................ TGGCTTTCCTGGAAGACATTCTTCAGTTAATC 33473 28 100.0 32 ............................ ATCGAGGCACTGGAAGCTGAAGAGTGGCTGGA 33533 28 92.9 0 ..G.....................A... | ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.5 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : AGAAGTCGTCGAGGACGAACCAGGCCTGGTCGTCGATCAGCAGGGCGCGCAACAACCGCTGCTGTCGGAAGAAATAGTGCGGGGCTAGCTGGGTATGGCCGTGCATGGGAGAAATCCTTCTCTGAGCTGTCCGCTGCCTGGCTTCTGCCGGCGGCGGCAGGGAGACAGGCCGCTCGTGGGTATGAGGCCAGCAGGCTGTGGCCTGCCGGCGAGCGAGTCGCCGGCGGGAAAAAGCCTACTGACAGCGCCTGTAGGACGGCAATGGCTAAGACTTGTACGAAGAGTCTGATGGCACAAGCCCGCTGAACAGCTAGGCCGTTCTGAACATTACGCCGGCATGGAGAAAACAGGGGATGGACGCTATGCTTGGGAACCCTTTTTTTGGTGGGTTTTTAAGCCCTTTTAGATCAAAGGGTTAGAGGTCGCTGCAAAAAGAGGGTTTTTCCGGGCTTTGGCGCTGGAGCCCTTGGAGCTTGGAAGGTTGATGGGGTTTTGGTCTA # Right flank : ATGTCCCGAAGTTCATAAGCGGGCTTAGGGCGATTTCACTGCCACGTAGGTCGTAAAGCAGCCCTGAAGTATTGATTGATGCGGTTCGCTGTCGGCCGGGGTCACCAGTCGAAACGAAGTCCCGTTCCCTGGGACTTCGTTGCGGGCATGCCGTTGAGGCGCTGACGGGTTCTTCAGAACCAGGGAACGAAACCTCCTTTGCTCAACCCGTAACAGGTGAATCCTCCTTCCTCTGCCGTCGCCTGCAACGGCCCGTGGCGGATGAAGAGACGGAAGTGCTGTCCGGTGCTCTGGCTGCGTAGCGTGACGAAGGGCAGGTCCAAGGTTCTCGCGACCGTATCGGGAATGCGTTTCCGAGCCTCCTCCTCACCCAGGTCGTGCCGGCGCATGAGCCGCCGCCGCAGGCGTTCCGGATTGCTTTTCGCCTGAACCCGACTGACCTGACGGTACGGTGTGGGGTGAGGCACGACTGCCGGTTCTCCGAATTGCAGATGGTCGCG # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 43568-42100 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUW01000207.1 Pseudomonas aeruginosa strain 515477 contig_207, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 43567 28 100.0 32 ............................ ATCTCGTCGTACTCGTTGCGCGTCATTGTTGT 43507 28 100.0 32 ............................ GAGGATTCTTGCCAGCGCATCGAAACCTGTGC 43447 28 100.0 32 ............................ CCGGCTTGAGTGCGGTCCCCCAGCCTTCGAAC 43387 28 100.0 33 ............................ GGCACTCGCGGCCGGTTTGGGCCACGCCGTTGT 43326 28 100.0 32 ............................ TGGTGCATCGCGATCACATTCGTTGATGAAGA 43266 28 100.0 32 ............................ ATGCAGCCACCCCCGCATTGGGACGTATCACT 43206 28 100.0 32 ............................ TTCACGGCTCAGGAACTCCTGTTTCAGCTCCT 43146 28 100.0 32 ............................ TCTGAGGTCGCTATGCGCGTGTTAACTTTGTT 43086 28 100.0 32 ............................ TTCAAGTGGAGTCACGCATCTCGAGGACTGCG 43026 28 100.0 32 ............................ ACGAACTTGATGGTCAGGGCGCCGCGCGGGTC 42966 28 100.0 32 ............................ TGGCCGCCCCGCCTGGCCGGCGCCGGCATCAA 42906 28 100.0 32 ............................ GCTGGCGCTTTGTTTCCGTGCCGTCGTTATAC 42846 28 100.0 32 ............................ GAAGCCCAGGTCCTCGGCGGCCACACCGCTGT 42786 28 100.0 32 ............................ GCAAGACGCTGGGCAATGGGTACATCGTGCAT 42726 28 100.0 32 ............................ AGCACCAGCTTGCCGTTCGCCGGCTTCACCAC 42666 28 100.0 32 ............................ AGGAACTTGGCGACCGCAGCGGATCGGCTCAT 42606 28 100.0 32 ............................ TGAAAGAAGCGCTTGGGCTCAAGAATCCTGTC 42546 28 100.0 32 ............................ AAACGACGCGCCCTAGCACGAGAGCGCTTAAG 42486 28 100.0 32 ............................ GTCGAGCGGGCGGTCGAGCGGCTGCGCAGCAA 42426 28 100.0 32 ............................ GGAATGCAGTTGCCCGAGCGGCGGCGCCTCCC 42366 28 100.0 32 ............................ TGGAAATCCTCCGCCTCCGGCGCCACCACAAT 42306 28 100.0 32 ............................ ATCGAGCGGACATATCTAGAGGCAGTGAAGAG 42246 28 100.0 32 ............................ ATAGACTTGCCGATCTCGGCGGCTGCGCGGAC 42186 28 100.0 32 ............................ CGTTGATCTAATGCGGATGCGGGTGGAAACAG 42126 27 78.6 0 ...........CGC.......C..-..G | ========== ====== ====== ====== ============================ ================================= ================== 25 28 99.1 32 GTGCACTGCCGTATAGGCAGCTAAGAAA # Left flank : ACCGCTTTCCGCGCAACGCCACGCTGTACCTCGACACCCAGGCGCCGCCCGGCCTAGTTGTTCGAGAGCGCGAAAGCGTGCCTGAAGTCGGCGATCAACGTCCTTGCCCTGACCTGCCTGCTCGACGAGAACGAAGAGCCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGAAGCGGCACACCCACGCCAGTAGCGCCGTCCCAGACGCGACGCCCCCGGCCAAGCCGGGGGCTTTGATATGTGATCCATACGAGGTCCATTCGCGCGCGAACGGCGAGGTTCATCGCCCGTATCGGCCGTCGCGAAATGGCCTCCAATGCCCGAAGCTTCCGACCCTTTTTTCGGACGGTTTCTGACGCCCTTTAAAATCAACAACTTACAAACCATCGAAAAAAGAGGGTCTCAGACAGAGAAAAGCCTGTATTTCTTTTTCCTTCAATTGGTTATAGGTTTTCGGGGCTA # Right flank : CTTTCCCGCCCTACCCAATACCCAGCCAATATCAGGAAAGTCCTACCTCCTCCACCCTGCCCGCCCTGCTACCCTCACCCGGATGCAGCAATGCGCCACCACCTTGAAGCCCATGCCTCTCGTACAGACGAAAGCGGGGGTAGCGGCAATCGGCCATATCCGCTAAACAGGTGCCCTGGTGCAGTATTCGACAGAACCGATAGGGACGGGCCACGGTCAGCATGGACGACATCTCCCCCAGCGCACTGAAGACGATCCTTCATTCCAAGCGTGCCAACCTGTACTACCTGCAACACTGCCGGGTACTGGTCAACGGCGGGCGCGTCGAGTACGTCACCGACGAAGGCCGGCACTCGCACTACTGGAACATCCCCATCGCCAATACCACCAGCCTTCTGCTGGGCACCGGCACCTCCATCACCCAGGCGGCCATGCGCGAACTGGCCAGGGCTGGGGTACTGGTGGGTTTCTGCGGTGGCGGCGGAACGCCGCTGTTCAGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,9] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [43.3-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 140769-141577 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUW01000030.1 Pseudomonas aeruginosa strain 515477 contig_30, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 140769 28 100.0 32 ............................ GATGCCGCCAGCCGTGAGGTGGAGCTCTATCC 140829 28 100.0 32 ............................ TTGTGCTGATCGACTGACTTCCCCGGCAAGGA 140889 28 100.0 32 ............................ AATCGGCAGCGTCGAACACCGGCGACTACTCG 140949 28 100.0 32 ............................ TCACCAATACATAGTCAGAAACAGGACAACGA 141009 28 100.0 32 ............................ TTGCGTTCAAGGCCTGGAAAGCCAGCCGCGCG 141069 28 100.0 32 ............................ TTGCTCCGGCCAGAGTAAGGGATGCTGTTGGG 141129 28 100.0 33 ............................ CTCCGCATCCGAACTCATCCGCTGGAACCTCAC 141190 28 100.0 32 ............................ TGGGAGACTGCTGTACATCCCTTCAAACGCCG 141250 28 100.0 32 ............................ GGGGAGGGTTGCGCCAGGGCGGCGCGGGCTTG 141310 28 100.0 32 ............................ CGAGTGGTGGCGTTGCGAGGGCGGCCCACGTC 141370 28 100.0 32 ............................ AGGAAGTCGGGGAATTTCGCCCAGCTGTCGAT 141430 28 100.0 32 ............................ CCGGAGGGGTGGGGGTGCTGTAACACCCCCAC 141490 28 100.0 32 ............................ TCTCCACCCCAGCTATTGCCGGGGAGGGCATG 141550 28 96.4 0 ...........C................ | ========== ====== ====== ====== ============================ ================================= ================== 14 28 99.7 32 GTTCACTGCCGTATAGGCAGCTAAGAAA # Left flank : CCGCTTCCCGCACAACGCCACGCTGTACCTCGACACTCAGGCACCGCCCGGCCAGTTGTTCGAGAGCGCGAAAGCGCGCCTGAAGTCGGCGATCAACGTCCTCGCCATGACTTGCCTGCTCGACGAGAACGAAGAACCCGGCGACACCCTCGCCTACATCAACGGCGCCTTGCTGAAGCTGGTCAGCGACGCCCTCTCCGAGATCGACGCGGCCCACCCACGCCAGTAGCGCCCGTCCCAGGCGCGACGCCCCCGGCCTGGCCGGGGGCTTTGAGAGGTGATCCCTTCGAGGCCCATTCGCGCGCAAACGGCGAGGTCCGCCGCCCGTCCCGATCATCGCGAAATGGCCTCCAATTGCCCGAAGCTTCCGACCCTTTTTTGGGACGGTTTCTTACGCCCTTGAAAATCAAAGACTTACAAAGCCTCGTAAAAAGAGGGTTTCAAACTGGGAAAACCCTGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGCGGCTA # Right flank : ATCGCGAGCGATATAAATCCATAGGGCACCGGCCTGCGGAGGTCTGGCAGGCACGAAGTCATGCTTGGCCTCCAGACGGTAGGGCGGCGAACCCGCCCCGTCAGGAGGCCGAGCGGAATCGTTGCGTAGGGGGACGAGCGGCAGGAGGCCGCGAGAGCCGCCCCGGTCCACGAAGGACCGTGGCGGCGGGCCTCCGGGAGCAACGATGCAGCGAGGGAACCCCAGTCGCGTAGCGGCTGGGGCCGGATGCAGGGGCAAGCGCTTTGGTTACTTTCTCGCGACTGAGAAAGTGACTCGCCTGGGAAGGCGAAACAAGAGGTCGAGGCAGGCACGACAAGCAGCTAGACCGCCCAGCCAGAAGCCCGCTCAAGCTTTAAGCGACATCCTTCCCCAACTGTTAACTGCCGTGTAGGCAGCTAAGAAAACGGTCCCTTGCTCGCGCCGACCAGACGTCCCTTTCACTGCCGCATAGGCAGCCTGACTTCCCTCGGACTCGCAAA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 604-396 **** Predicted by CRISPRDetect 2.4 *** >NZ_MPUW01000177.1 Pseudomonas aeruginosa strain 515477 contig_177, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 603 28 96.4 32 A........................... TCACTAGCACGTCGGGCAGGTCCTAGACAGTA 543 28 100.0 32 ............................ ACTCCCCGCAGGACGCGGCGTGCGAAGGGTTA 483 28 100.0 32 ............................ AGCAGAAAGAACGCACCGAGTGGCATCGCGTG 423 28 96.4 0 .....................G...... | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : CCAAGGCGGCAGCCTCTCGTTTGAACTCGGCGGAAAACGTACGTCGTTGCTTGCTCATCAGACACCTCTCTCACGGTGAGGATTCTCGCCTAAATCGGTGTCCGGGATCAGTAGACCACTA # Right flank : AACGAAGGCTTCTCGCCAAGACGATGAGAAGCCCAAGAAAAACGGCGCTTCCCTTGCTCGAGGAAGCGCCGTTTTACTTAACTGACGGGCATTAGGCGAAAGCCGGCCTTCTGGTTTGCCTGTCGTCCGTGCGTCAGCGCACCACGTGCAGGAAGTGCATGTGCCGCTCGTACTGGTCGAGGATGTCGCCGATTACGCCGTCGCGGCTCCAGCCCATGATGTCGTAGTCCTGCGCCCTCCTGCAGGTGGACCTCGGCGCGGAAGTACTTGCGCGCCTCGCTGCTGTCCTCGGTATCGCGCATCACGAAGCTCGGCGTGGTGAAGGCGCGCGGACGGACCTCGTAGATGAAGTCGACCTCGCCACCGTGGCTGACTTCCAGGCGCACCCGGCCGTCC # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.85%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-4.70,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //