Array 1 2963318-2960908 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038593.1 Salmonella enterica subsp. enterica serovar Senftenberg strain SA20130280 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 2963317 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 2963256 29 100.0 32 ............................. ACACCGACTCATCCGTTGTTACTCCTGGTATT 2963195 29 100.0 32 ............................. CGCTACGCCCTGCCCGGTCTCGGTCTCGGTCT 2963134 29 100.0 32 ............................. CACATCGGGAGCCTCAATCAACCCGGCACGGA 2963073 29 100.0 32 ............................. AGTTCGATATCCCTTAACGGTACTGCCGTCCT 2963012 29 100.0 32 ............................. CCTCACGCAATTGAGCCTCTTTCTCGACACGC 2962951 29 100.0 32 ............................. GGCCAGTTCAACAAACACCACGACGCGGGAAT 2962890 29 100.0 32 ............................. TTCATCACCGTCAGCAAGCTGCGATCCGAAAT 2962829 29 100.0 32 ............................. CCAGCTTGCCGATATCAACGACCTATACCTGT 2962768 29 100.0 32 ............................. GTTAAAATTTGGGAGGATCGCCCGGGACTCCC 2962707 29 100.0 32 ............................. GGACCATTGAAACGGCGCTGACATCAGATGTT 2962646 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 2962585 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 2962524 29 100.0 32 ............................. GAGATTTTTCTTGTCCCGCCACACCAGCGGCT 2962463 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 2962402 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 2962341 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 2962280 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 2962219 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 2962158 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 2962097 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 2962036 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 2961975 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 2961914 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 2961853 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 2961792 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 2961730 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 2961669 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 2961608 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 2961547 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 2961486 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 2961425 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 2961364 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 2961303 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 2961242 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 2961181 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 2961120 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 2961059 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 2960998 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 2960937 29 100.0 0 ............................. | A [2960910] ========== ====== ====== ====== ============================= ================================= ================== 40 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 2982861-2979863 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP038593.1 Salmonella enterica subsp. enterica serovar Senftenberg strain SA20130280 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 2982860 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 2982799 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTGCC 2982738 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 2982677 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 2982616 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 2982555 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 2982494 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 2982433 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 2982372 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 2982311 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 2982250 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 2982189 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 2982128 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 2982067 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 2982006 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 2981945 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 2981884 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 2981823 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 2981762 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 2981701 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 2981640 29 100.0 74 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCCGTGTTCCCCGCGCCAGTAATTTGACGTATCCGTGAACCAGTT 2981537 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 2981476 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 2981415 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 2981354 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 2981293 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 2981232 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 2981171 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 2981110 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 2981049 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 2980988 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 2980927 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 2980866 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 2980805 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 2980744 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 2980683 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 2980622 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 2980561 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 2980500 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 2980439 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 2980378 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 2980317 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 2980256 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 2980195 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 2980134 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 2980073 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 2980012 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 2979951 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 2979890 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ========================================================================== ================== 49 29 99.3 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //