Array 1 78448-76829 **** Predicted by CRISPRDetect 2.4 *** >NZ_JVFV01000043.1 Streptococcus pseudopneumoniae strain 469_SPSE 366_106882_1834358_236+,...,310_, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78447 36 100.0 30 .................................... AGCGGGGGCGTGGGGAGTTCATAATAAGAA 78381 36 100.0 30 .................................... GATTATGCTGGAAAGAACTTGATTGAGTAT 78315 36 100.0 30 .................................... CCCTGTGTGTGTCTTACGTTCCACAAGACC 78249 36 100.0 30 .................................... CCATATCTCAAACAGTTACCCAATAAATAC 78183 36 100.0 30 .................................... TAATTCCCAGGGTAATGTCGGTGAGTTTAC 78117 36 100.0 30 .................................... TAGAAACGGAAGATTATGAGAAATTCTGTT 78051 36 100.0 30 .................................... GCTTTCCACTAACCCTTTGTATGTCTTTTT 77985 36 100.0 30 .................................... CACAGAAGCTTCAACGGTTTGAGTTTTTCA 77919 36 100.0 30 .................................... CGGGCGATACTGGATTTAAAAATATTAATG 77853 36 100.0 30 .................................... TAGCGATATTGTTTCGTGTCTGTGTCTGTA 77787 36 100.0 30 .................................... TAACAACTCGTCCTAATGTTTGGATAAACC 77721 36 100.0 30 .................................... CTCAATAACAGAGTTCACACCACCGCCGCC 77655 36 100.0 29 .................................... CATCAAAAGCCCATCTGTCTTGGTCATCA 77590 36 100.0 30 .................................... TTTGGAATAAGTCAAGAGATAAGTGATATA 77524 36 100.0 30 .................................... TCAACAAACACTGTTGAAGTATGAGCATGA 77458 36 100.0 30 .................................... GTTAATTAAATATATTTGTTTAACAACATA 77392 36 100.0 30 .................................... CTGTCGCCAAGTTAGGTCTAAACTTCTTAC 77326 36 100.0 30 .................................... GCCCACCTGCTGCGTTCTAGAGTCGTCTGT 77260 36 100.0 30 .................................... ATGCCGATGATTGAGTTAGCATATTCTCCC 77194 36 100.0 30 .................................... TTCTATTGGCCAATTTGGAAACATATGGTG 77128 36 100.0 30 .................................... AAGCGGATAAAGTATTAGCTTCGCTAAAAC 77062 36 100.0 30 .................................... CTGTCGCCAAGTTAGGTCTAAACTTCTTAC 76996 36 100.0 30 .................................... GCCCACCTGCTGCGTTCTAGAGTCGTCTGT 76930 36 100.0 30 .................................... AAAGTTAACGAAACCAATGATATTTATGCG 76864 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 25 36 100.0 30 GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Left flank : ATCAACTCAATGACAAACCCGAAGTCAAGTCCATGATTGAAAAGCTGGTAGCTACGATTACAGAATTACTGGCATTTGAGTGTTTGGAAAACGAATTGGACTTGGAGTACGACGAAATCACCATTCTAGAGTTGATCGATGCGCTAGGGGTCAAAGTGGAAACTCTGAGTGATACACCTTTTGAAAAGATGCTAGAGATTGTCCAGGTTTTTAAATATCTTTCGAAAAAGAAACTCCTTGTTTTCATCAATGCATCTGCCTATCTATCAAAGGATGAGTTAGTAAATCTGATAGAGTATATCCAACTCAATCAACTAAGAGTTTTATTTATCGAACCTCGAAAAGTCTATGATTTTCCGCAGTATGTGATGGATCAAGACTATTTCTTGAACCCTGAAAATATGGTATAATAAGAGTAACAATTGGAACCTAACGAGCTGAAGTCTGGCTGGGACGAATGGCGCGATTACGAAATTTCGTGAGAAAAATTTTTCTACGAG # Right flank : TAAAAACAAAAGGCTTAAAATGATTACAAACAGTACATACCTAGAAGACCTAGAATGGGATGAGAAGCTAAAGGATGAAGAAAATTTTTCAGAATGGTTAAGTCAATCTGTAGGATTTTAAAGGTTTAAAATATGTAGTTGGGATTTATAAAATCCCTCTACTAACTCATAGAATATGGGTAACATGGAAAGGAATGATAGAAAATGAAAATGTTTAATTTGTGGAAGTATTCAATCGCAATTTTTATGGCAATCTTGTTACTTTGGGTAAATTTTGCCCCAAAAGGTAAAATTGAAGATGTAAAACCAATAGAGAAGACTCAACAAATAAAAGATGATGATTTGAAAGTTGAGCTAAAAGATGGTGTTGTTTTAGGGAAATACTATACAGAGAAGTCTAACACTGAAAAAGGGTACTATATTATAGTTTGGGATGCAGACTATAATAAACCTATTGAATATGATGTAGACTTTGGAGAATGGTCTAAAATCCATTTTGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTGTGTTGTTTCGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [68.3-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.87 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //