Array 1 270282-269123 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016803.1 Limosilactobacillus fermentum strain SK152 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 270281 36 100.0 30 .................................... GATGGGAATAATTACGTCGGTGATTATCCG 270215 36 100.0 30 .................................... TCGTGATAGCTCACAAAGTCCTCAATGCCG 270149 36 100.0 30 .................................... TTGATAGGAGGAAAAACATGGCATTAGTCC 270083 36 100.0 30 .................................... AAACTTTTCCACCTCACTAACCCAATTCCA 270017 36 100.0 30 .................................... ATCGGTTACAGTAGACGATAACCACTCGTT 269951 36 100.0 30 .................................... AACCAGTCACGTTCAAACGAGCTGACGTTA 269885 36 100.0 30 .................................... GTTGACGCAGTGTCAACAGTGGTTGGATTA 269819 36 100.0 30 .................................... CGTGAATCTCGCCCTTTGCGCGTTTCTTTA 269753 36 100.0 30 .................................... CTTGCAATTGGTTTTCCATGTTTGCTCCTC 269687 36 100.0 30 .................................... AACTTTATCAGGTAACTTAAGATACATGGA 269621 36 100.0 30 .................................... GCGCCGTTTGCTCTTCATCGTAGTCTGGTA 269555 36 100.0 30 .................................... TTTTATCTTCGTAGCTTTTACTTGGGTGCT 269489 36 100.0 30 .................................... AAATGTTACAGCCAAGTCATTAATATTAAC 269423 36 100.0 30 .................................... TACCGTCATCATTCCATTGATGGAATTCTA 269357 36 100.0 30 .................................... TAATCACTCATCGTGTGGACTTCGGCATCG 269291 36 100.0 30 .................................... AGGGAGTCATAAATCATTTCTTGCATTTCT 269225 36 100.0 30 .................................... CATCTGATTGAAATTAAAAACTTTAAACCG 269159 36 88.9 0 ............................TT....TA | A [269127] ========== ====== ====== ====== ==================================== ============================== ================== 18 36 99.4 30 GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Left flank : TAATCCAACCAAGCTTGATAGTTACCAAACGGCACTTGATAAGATGATTGTTAAAAATCTTAGCATTCGGAAGCGAGATCGGATGAATGACCTCGCTCGTGGGGTGTTCTCAGAGATGCAAGATTCTTTGTTTGAATTTGATTTGCCCTTGGAAGTCAGGTATGACGAGAGTCTCTTGAGATTATACAAATATGCGAAAATTAAATATTTGACGCAAGTAATAAGGCAACCTTATGGTATAATTGAAACCGATCTAAAATTACATCTCGAATTAAAAGACTGTCAGGTTCTTGGGTATTGTAATGTCGCAAATTACTTATTGCCTGAGCAGATACAGGAATTCGCTACTCTTGTTGAGAAAACCGAATTGGCAGTTTTATTAGTAGAATTCTCAGAAAAGAGAGAAACTCTACAACAACTCAAACAGGATATTTACCGGATTGATCGGGACTTCGTGGACTGGCACGAATAGACCGTTAGTTTTTGATGATAAAACAACG # Right flank : TAGACTAAGGGCGTTGCTGTTTTTAGCAATGCCCTTTTTGAAGTGATGAGGGAAAGGAAAATGTCTTCACGTTGGTAATCTAACGGGAACTTTGGTGGGCGATATGCTAGGATAGGGCCAAAATGATTGGAAGTGTTTGCCATGCAAATTGATCCCGAAATGATTCGCCCCGAACTGCGCCGGATCGGCAAGGTGGGGTACGCTGTTAACCTGTTGGCCAGCCCCGTACGCCTGCAACGAATGGGACGGATGATGGCGAAGGCGAAAAGGCCCATTCACTCGCGGCGGGTGATCAAACAAGACGTTTGGATTGAACGCCCTGACCACAGCAAGCTTCGGTTGGCCATTTTCCGGGCCAAACAAGTCGTGACCAAGCGCCCGGCCACCGGGATCCTCTGGTTGCACGGGGGAGGCTATGCCTTGGAAAGCGCCGAAAATACATTGGTTTATGCTGAACAATTGGTGGCAGACGGGCGGTCCGTGATGGTGGCGCCGGATTA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTGGATGAGTGTCAGATCAGTAGTTCCGAGTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-1.80,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA // Array 2 1915479-1920510 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP016803.1 Limosilactobacillus fermentum strain SK152 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1915479 29 100.0 32 ............................. AGCGCTCATAGAATTAGATACAACAGACTTGA 1915540 29 100.0 32 ............................. CATTGACCAGTTAGACGAGATTATTCTAGCCC 1915601 29 96.6 32 ............................C GTGGAGCGGTTCGGCTTACCGACCGACGACCG 1915662 29 100.0 32 ............................. CAGCGATCTCGTTCATCTGTCGATATGATAAA 1915723 29 100.0 32 ............................. ATTGTCCCATACCGTTTGTACTACGGTTTTAA 1915784 29 96.6 32 ............................C CGGGTCAAAAGCCTTTAAGTGCATATTATTGG 1915845 29 100.0 32 ............................. CGCACGGGGTCGGCACCGACGCCGTCGTCGTA 1915906 29 96.6 32 ............................C AAACGTCGTACCAAAACCTTAATAAGCCAATT 1915967 29 96.6 32 ............................C AGCATATCACCCGTCTGATATGGCGGGCTGAC 1916028 29 96.6 32 ............................C ACCGCAATTGAACAGGCTTTAAAGCAACATGG 1916089 29 96.6 32 ............................C ACCGCAATTGAACAGGCTTTAAAGCAACATGG 1916150 29 100.0 32 ............................. CAATGGCGTGTTGAACGACCAGCTTAGCGGAC 1916211 29 96.6 32 ............................C ACGGATTAACCGTGCGCTTTGATCTGCGCTCA 1916272 29 100.0 32 ............................. CTTCCAGTTGCTTCTTCAAATCGGCGTTCTCT 1916333 29 100.0 32 ............................. CCGTACTGGTATAAAGTTAGGCGTTGCGTTGT 1916394 29 96.6 32 ............................C ATGCTAGTCAACGGTATTGCACAGCAAACGTG 1916455 29 100.0 32 ............................. TGATTTGGCCGTCGGTGAAATTGTAGGTAAAA 1916516 29 96.6 32 ............................C AGCGGGACAGAAAGTGCGGCGGTGCTGGACTT 1916577 29 100.0 32 ............................. AGGTTTGCACCTTTGTATTCTTCCATCGTTCA 1916638 29 96.6 32 ............................C GTTCGTAAACGACGGGAAATAGTTGTAATTTG 1916699 29 96.6 32 ............................C TTTAAAAGTCAGAGCGTTTTGGCCAGGAGCAC 1916760 29 96.6 32 ............................C GAAATGGCCTTTGGATTGAAGTGGGGGAGGTG 1916821 29 100.0 32 ............................. ATACTTTTACCACACAAAAAAATCCCCCTCAC 1916882 29 100.0 32 ............................. AGCTGGTGAGCGATGACTTGGACACATACCCG 1916943 29 96.6 32 ............................C GTTGCCAACCTTGATCGTCGGACTAATACCAT 1917004 29 96.6 32 ............................C GCGAGAAGGATCCGGATTGCCTGGTTGACACG 1917065 29 100.0 32 ............................. ATTTCAAGATAGCCCAAGAACGTATAGAAAAA 1917126 29 100.0 32 ............................. CAAAAACGCACAAGGCGATATCTCAAAATTGC 1917187 29 100.0 32 ............................. TAGCCATACAGCTAAGGACTCTAGCAGAGCTG 1917248 29 100.0 32 ............................. CAAAAACGCACAAGGCGATATCTCAAAATTGC 1917309 29 100.0 32 ............................. TAGCCATACAGCTAAGGACTCTAGCAGAGCTG 1917370 29 96.6 32 ............................C GGGTTCGACTCCCCTCTTAGCTCATTGGATAG 1917431 29 100.0 32 ............................. TAGCCATACAGCTAAGGACTCTAGCAGAGCTG 1917492 29 96.6 32 ............................C GGGTTCGACTCCCCTCTTAGCTCATTGGATAG 1917553 29 100.0 32 ............................. CACGTAGCGCCATCAGAAATGAAGCTACTGTA 1917614 29 96.6 32 ............................C TGCAACATCTATGTCTAGCGGGTACTGGATCC 1917675 29 96.6 33 ............................C TGATCAACCTTGTTGGATAGGGTTTGGACCGTG 1917737 29 100.0 32 ............................. TAGCCATACAGCTAAGGACTCTAGCAGAGCTG 1917798 29 100.0 32 ............................. CGATAGCAGTCATGGTATCAGATACTTTTGGT 1917859 29 96.6 32 ............................C TACAAAACAAATAAAAAGGCCGTCCAATTTCA 1917920 29 96.6 32 ............................C ACGTGGGCCAAGATGCTAGGCCGGGTAAATGG 1917981 29 96.6 32 ............................C ATGGTCAAAGTATGACGCCAGCTGTTCAGCGT 1918042 29 100.0 32 ............................. GTGATCGATGAGCATCCTCACGATAGCGGTTT 1918103 29 96.6 32 ............................C TGGACGTAGCTAAGGACTTAATTGACAAGGAA 1918164 29 96.6 32 ............................C TGGACGTAGCTAAGGACTTAATTGACAAGGAA 1918225 29 100.0 32 ............................. CTGGTAGATGACTCCTAAGTTGAGTTCTTGGA 1918286 29 100.0 32 ............................. GTGAACTGGCTTGTCAGGCAAGTGTTGCCTAG 1918347 29 96.6 32 ............................C GCCCGCTTCGGTAAGCCGGACAAGATGACCAT 1918408 29 100.0 32 ............................. AAAACCGCTGGTCATTTTTGGCCGGCGGTTTT 1918469 29 96.6 32 ............................C TAATTCAGTGTCCTTAAATTGCTTGATTAGTT 1918530 29 100.0 32 ............................. GTCTATACGGGTATAGACAAAAATGTCACGGG 1918591 29 96.6 32 ............................C AAACGGTTGAACGATGCTTAAACTGGGCTGTA 1918652 29 96.6 32 ............................C TTGGACAAGCCAATTAAGGGTGCGTTTGCCTT 1918713 29 100.0 32 ............................. ATGCGCCCGGCCTACTTGCAACTCGTCCACAC 1918774 29 96.6 32 ............................C TGTCAGACGGCTACCGGGAGATCGTAAACCGT 1918835 29 100.0 32 ............................. ATCGTGCACGAGCTCAAAGATGCCGGGATGTC 1918896 29 100.0 32 ............................. GTTTTAATGCGTTTTGTGAGCGCTTGTACGGC 1918957 29 100.0 32 ............................. CTGTTTCCATGCGCCGAACGTCTCACCTAGCG 1919018 29 96.6 32 ............................C GGGGAAGCGACCCGCATCTGCTCGATCCCAAC 1919079 29 96.6 32 ............................C CGGTTACACGTAGCATCAGAGTTCACAGCACA 1919140 29 96.6 32 ............................C TGTTCTCATTGCCACCACCTCCTACAGCCCTA 1919201 29 100.0 32 ............................. GGTGCACATTTGGTGCACGGTTAGCTCAAGAA 1919262 29 100.0 32 ............................. GTTTTAATGCGTTTTGTGAGCGCTTGTACGGC 1919323 29 96.6 32 ............................C TGAGCCGGATTTCTCTAACGTTACTAAGCTCG 1919384 29 96.6 32 ............................C GTTGTTGACCACCAAAGCGATCAAGAAAACCG 1919445 29 100.0 32 ............................. GTTACCAGCTACTCGGTAAGCATGGTTTGCTT 1919506 29 96.6 32 ............................C GCCCACTCTTCTAGCCACAGCCAGATTGTTTT 1919567 29 100.0 32 ............................. CATCCTTTCAGCTGTTCGTTTTCAAACGCCCA 1919628 29 96.6 32 ............................C GTGCAAAAGAAATTTAGCGACGAGATGGCCAA 1919689 29 100.0 32 ............................. ATCATCTGGTTCAAGCGTCAAATTAACACCTG 1919750 29 100.0 33 ............................. AACGCTTCGTAAACCATCTTCTTGAAATCATTG 1919812 29 96.6 32 ............................C GTGCTTAAGTCTTGGCCGATGTGTGCATCCCT 1919873 29 100.0 32 ............................. CAGCCGTGCACTTTGATCTGCGCTTAACTTAA 1919934 29 96.6 32 ............................C TACAATGGCGCCTTCACTACCAACACCGGCGG 1919995 29 100.0 32 ............................. GGATCACCAACGTGGCGGACGGCACCAGCTTA 1920056 29 100.0 32 ............................. CGAGAACTATCGGAACAAGCACTCGTTCCGAC 1920117 29 100.0 32 ............................. ACCACCGACCCGGGCGTAACCGTAGTAGCGAA 1920178 29 96.6 32 ............................C GTTCGACAGCAAAACCATCAATGTAATCATTG 1920239 29 100.0 32 ............................. TATGCTCCAGTAACGCGCTAAATACACTCAAA 1920300 29 96.6 32 ............................C AGCGTCCTGGGCCAACAAGTGCTTCGCCTGGA 1920361 29 89.7 31 .............G.......A......C GACATGTGGAAGCGGCTGATCGCCATCCCCG 1920421 29 82.8 31 .......T....A.....A..A...G... GCTTGCCGGGATCCCTGTCTCCGTGTGCCTC 1920481 29 79.3 0 ...T.......TC.A........A....C | T [1920484] ========== ====== ====== ====== ============================= ================================= ================== 83 29 97.8 32 GTGCTCCCCATGTATATGGGGGTGATCCT # Left flank : GCGACTGACGAAATAATATCGATAGGGGCAGTTAAGTCAACCAAGGGGAGAGGGCTTGAACGATTTTATCGGATCGTCAGAACTAGCAAGCAAATTCCTCCTAAAATTGTTAAATTAACGGGACTTAACCAACGAAAGGTTAATCAAGAAGGAATTAGCTTAGAAGCTGCCCTTACGGATTTCAAAGATTTTATTGGGCACGCAATAGTGGTTGGTTATAATGTTGCATTTGACTGGGAATTTATCGAACGAGGGTATGATAAAATAGGACAAGATCGCTTAGGTAATCGAATTATTGATTTACTTAAAGTGGTTAGGCAAAAGGAAGTCTTTTTGGATAATTTTCGCTTTGAAACGGTTCTAAAATACTACCAAATTGAGAATCAGGATCAACATAATTCACTAGCGGACGCCGAGGCATCGATCAAGCTCATGACCAAACTGATTGAAAAAGGGTTTTTGAAGATTTGAAAGTCGCTTGGTTACAGGGATCTTTTAAT # Right flank : CTGCGCACTTCAGTCGCCAGAGGGACTTTAAAGTGCTCATGGGTGATCGCTAAGAAGTTAGCTCGAGCGTATACAACGAAAAAACAGGCAATTAATTTTGTCAGCGACATTTTACGTCCCTCGGGTGCGATAGACTAACTTTAGAGGGTACGTCGGAGCGGTGCCTTTGCCAAAGCCAGGGTCAAAATAGTTAAACGCAGTTCTTTTTCCGTATCTAACCATAAAGAAACCTTTTTAAAGGGAGGATGGTTAGATGCGCAAGAAAGTGCAACAGATTGGCAATCAACAGCGGCATCGGTTTCGGGCGAAATTTTGCCGACTAGGGTACAAGGTGAGCTACGGCCACTTCAAGCCAACGCTTTTACTGACCGAGGTGGAACTTATTGATGATATGGAAAAACCGCAAGTGGTGACTTCACACTTATGGTTTAACTACACGACGGGGTTTCAGCGCCTGGGTCAGTTACAACCGGGTGACGTCATTTTGTTTAACGCCAGGG # Questionable array : NO Score: 5.86 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.71, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCATGTATATGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTATTCCCCATGTATGTGGGGGTGATCCT with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //