Array 1 2958412-2951064 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025437.1 Weizmannia coagulans strain LA204 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 2958411 32 84.4 34 .A.A.ATA........................ TTAATCGGACTGCTTACAAATCTTAAGGAAGAAA 2958345 32 100.0 34 ................................ CAAATCCTCAATCTCAATGGGCTTGCACGCGATA 2958279 32 100.0 34 ................................ TGTGACCTCAAAAATTCGCCTTTGAGCGCAAACC 2958213 32 100.0 34 ................................ AGTGTATTTTAAGAATTTCAGATATGCTTTTAAC 2958147 32 100.0 33 ................................ GACCGACACGACCTGGCGATTGGAAGCATTACT 2958082 32 100.0 35 ................................ TCTTGAGAAAAGAATTGATGAGCTTGAGCAAAAAA 2958015 32 100.0 36 ................................ GCAAAGTACGGGATTAACGGCATCTGGGACGCAGAC 2957947 32 100.0 34 ................................ CATACTTGAAAATAGAAGGATTATCATTGAAAAT 2957881 32 100.0 35 ................................ CTGTACTGAATCATTACGACAATCGAAACAATCAG 2957814 32 100.0 34 ................................ CGTCCAGGGCTCGACTTCGACGACCGCCTGCCGT 2957748 32 100.0 34 ................................ GATATTCCAGCCCTCTCCACAACCTTCAGCTTGC 2957682 32 100.0 34 ................................ TGATCATCCTGAGGAACGAATATGGGAGAACAAA 2957616 32 100.0 34 ................................ CATCGCAGCCATGAAAGATAAAACCGCTTTGCGC 2957550 32 100.0 34 ................................ ATAAAAGTTACGTATGGTATCGTCAATCTACATC 2957484 32 100.0 34 ................................ CGTTAAATCCATATCGTCTAGGTGCTTTCCGTAA 2957418 32 100.0 34 ................................ CATGATATTTGTCACAATATCATCAAATTTACTT 2957352 32 100.0 34 ................................ TGCGCTAAATTGATTTGTAAGCTGATCGAGCCAG 2957286 32 100.0 36 ................................ CATCTCGTTAATGAACGTATCGCCCTCCGTGATTAC 2957218 32 100.0 35 ................................ CAGCGGACTGCGGCGCAAAATGTCCGCCTGTTCGT 2957151 32 100.0 35 ................................ ACCTCCTTTTTTTGTCTAAAAGGCAAGCAAGGATT 2957084 32 100.0 34 ................................ CTGATTTTTGCCCGCATCTCTGCGATTGTCTGGC 2957018 32 100.0 34 ................................ GATTCCGACATAGAGCTGGTGCTAGGGTCTGGAC 2956952 32 100.0 33 ................................ GGTGGCGTGTCGTATCTAAATGAAATAGAAAGC 2956887 32 100.0 33 ................................ GTCGAAACGGGAACAATGCGAACCGGGGGCATG 2956822 32 100.0 34 ................................ ATGATCCTGAGGACAGATACAATCTCCGAACCAG 2956756 32 100.0 34 ................................ GAGCTAACCGACGACCGGATCCTGCTTTGGAACG 2956690 32 100.0 34 ................................ CAATATCATGAGCAGGTTGTCGATCGTTACCCGA 2956624 32 100.0 34 ................................ ACCATCAATCTCTACAACATCATCCCCAGCCAAA 2956558 32 100.0 34 ................................ ACTAGGAAAATTGCAATGAGATATGATGTTGATT 2956492 32 100.0 34 ................................ AACGATTGTAAGGCAAAGGACTAATGTTATCATT 2956426 32 100.0 34 ................................ TTTTCCGTGGATCTCGTTGTGACACTTGATACAG 2956360 32 100.0 34 ................................ CTCTCCCATGTACTTTAAAATAAATGCCTCTCTC 2956294 32 100.0 33 ................................ AAACGCGGTGGATTTGCAACATATGAAAGAGCG 2956229 32 100.0 33 ................................ TATCACCGGCCAGGGCGCCGACTTAATGATCAT 2956164 32 100.0 33 ................................ TGCGACATTTCGTGCTGATGCCTACAGGATTTC 2956099 32 100.0 34 ................................ CCATTGTATGTCGTATTTTTTGACTTATAGTGGC 2956033 32 100.0 34 ................................ ACATGGAACGAATGACATTCATATGACCGATCAA 2955967 32 100.0 34 ................................ GCTATTCTAATAGCTTTCTGTGCTTGTGTAATAG 2955901 32 100.0 33 ................................ TGCCGTAAATGCTACGCCACCTATTGCCACCGC 2955836 32 100.0 34 ................................ CGGAGAAACGACAGCAGCTTTACGAAGCCACCCG 2955770 32 100.0 34 ................................ CGCAAGGTACTCATATCGATCTGTCACCTGCGGA 2955704 32 100.0 33 ................................ TTCATGGGATAAACGATTAATAAAGGGTGCTCA 2955639 32 100.0 34 ................................ ATCGACAGTAGTGTCATAATCCGTCAAAAGTCCC 2955573 32 100.0 34 ................................ TAGGTCTTTTTGCAGTGTCTCCCGCCAGATATCC 2955507 32 100.0 33 ................................ ACTTCAGTATATGGCGGATGGGTTAGGATTCAG 2955442 32 100.0 34 ................................ AATATCAACAAGAATGGGAATCCTGGTTTAATAC 2955376 32 100.0 35 ................................ CCTGTATAAAGTTTGCGCCAGCAGGCATGGGATGG 2955309 32 100.0 34 ................................ GATTCCGACATAGAGCTGGTGCTAGGGTCTGGAC 2955243 32 100.0 33 ................................ AAAGTCCGCCATACGTACTGCTGAGTCCTCTGT 2955178 32 100.0 34 ................................ TATTGGATTTTTTAATGTACCAATTCGGTCAATG 2955112 32 100.0 35 ................................ TAGGTTTTCGGTCGTTCCGCATACAAAACAAAATG 2955045 32 100.0 33 ................................ ATAGCCTCTCGCGCACATTCTACCGGGTCTGCA 2954980 32 100.0 33 ................................ AAGCGATGCGGAAAGCACATCTTTGTCGGTATA 2954915 32 100.0 34 ................................ TCTGGTCGTCTCCGTAGGGCTGGCATAAGCGCTG 2954849 32 100.0 33 ................................ TATTAAAATTGAAAGAGGAACCAAAGCAACCGA 2954784 32 100.0 35 ................................ CCAAAAGGTGTATATATCGCCCCGTTGCTTGCTGG 2954717 32 100.0 32 ................................ CTGATACAATATTATCAGCGCTTAAGTTAACC 2954653 32 100.0 34 ................................ TGATGGCCGCTATTTGTTACAGCCGATGGTTGTT 2954587 32 100.0 34 ................................ CAATCTCCGTTTCCTCCTCATATACGCGGCGGGG 2954521 32 100.0 34 ................................ ATCATAAATTACACAGCCGTCGCGCAGACCGTCC 2954455 32 100.0 34 ................................ CTGGAAGTGTACGACACAATTGGTGCACATGAAG 2954389 32 100.0 34 ................................ AACAATGGCAACATGGCTTTCCCTTACGCAGGAC 2954323 32 100.0 36 ................................ AGCATATTAAAAAGGTGACGAGGCTTAATACGCTTT 2954255 32 100.0 33 ................................ AGCATATTAAAAAGGTGACGAGGCTTAATACGC 2954190 32 100.0 33 ................................ CGACCATTGACATCTATTTTAAAAATGGCATTG 2954125 32 100.0 34 ................................ TTTGCGCTGCCTGTCATACCTTTAACAAGACCTT 2954059 32 100.0 33 ................................ TCCCAATATAATCTCTTATCCACCATAACCCAC 2953994 32 100.0 36 ................................ AGCATATTAAAAAGGTGACGAGGCTTAATACGCTTT 2953926 32 100.0 33 ................................ AGACACGCCGTTTCATATGGGCCTCTATCATGA 2953861 32 100.0 33 ................................ CGTCACCTCGACATTAAAGGTAGTTTGCGCCGG 2953796 32 100.0 34 ................................ AGCTGCTGCGACAGCAAGGATTTTAAATTTCTGT 2953730 32 100.0 34 ................................ ACCTGTGGAAGGCCCGGAAGAACCGTTTCCACCA 2953664 32 100.0 33 ................................ ATAAAGGCTACATCGAAAGAAAGGACTTGAAAG 2953599 32 100.0 34 ................................ TAATTTGTACCTAGATACAAATAAATTTGTAGGG 2953533 32 100.0 34 ................................ AAATCGAGATGTCGACTAATTACAACCGCGAGTA 2953467 32 100.0 34 ................................ TGATGGCCGCTATTTGTTACAGCCAATGGTTGTT 2953401 32 100.0 33 ................................ CGTTTGCAGTGAGTAATATCTATATTTTGCAAT 2953336 32 100.0 33 ................................ ATTAAACGATTATCAATCTATCCGCAGAATTTT 2953271 32 100.0 33 ................................ GAGGGAACCCGCCTCGACTATGACGAGTCGGGC 2953206 32 100.0 34 ................................ ATTGTGATCATTTTAGGGTTCCTCCTTTGATTTA 2953140 32 100.0 33 ................................ ACAAATGTAATGCGGTCATTCAGCTGCCCCGTT 2953075 32 100.0 35 ................................ GCCAAAATAGGGACGCCCGCTGCTATCCAGTGAAA 2953008 32 100.0 35 ................................ AACAAAAAATTATTGACTGAAGCACAACGAAAAAA 2952941 32 100.0 33 ................................ CGATTCGCTCCGCTACCATCTCCGACAATCATT 2952876 32 100.0 34 ................................ TTGATGACAATGAAAAAGTAACAGACACATTTAC 2952810 32 100.0 34 ................................ AGAATAGGGGAGCGAAAAAATGACAAGATTAGTA 2952744 32 100.0 34 ................................ AGCTTGTGCAGCAAATAATTTTTGTAAATTCATC 2952678 32 100.0 34 ................................ AGTTGCTGGTGTATCTATGGTGTATAAATCCCCA 2952612 32 100.0 34 ................................ CCCACGCCAATGTTGCTTGCAATTTTATAGCATT 2952546 32 100.0 33 ................................ AGGAATATATTGGCAACGTTGATGGGACAAAGC 2952481 32 100.0 34 ................................ TGGATTGGCGCATCCTCGGATACCGTTCGTTTTG 2952415 32 100.0 34 ................................ CCAGGCATCGATCCGGTCCCGCTCCTGCTGTGCA 2952349 32 100.0 34 ................................ GAGCTAAAAGATTTTACTTTTGAAAACATATCGC 2952283 32 100.0 34 ................................ CGCTGTTAAGCGCGTCCAGGCGCCGGCTTTAATT 2952217 32 100.0 34 ................................ TTGGAGCCATATTTAGTTTTCTTAGTTAGCTTGC 2952151 32 100.0 34 ................................ TTAACGCGCTCCGCAAAAATGACAAGCTCGCGTT 2952085 32 100.0 34 ................................ GAGACGGATGAAATTGTAGATGCTACGGCTAAGC 2952019 32 100.0 33 ................................ TCTATGCCCGAAAACGTAGCTGACGATTTTGTC 2951954 32 100.0 35 ................................ CAAAACCTTTAAATTTAAAAGCCCGGAACGTCGGG 2951887 32 100.0 34 ................................ ATTATGGATCCGAAAGCACCAGGAATATCCGGCA 2951821 32 100.0 34 ................................ AACAAAGCACTGTTCGCCCTAATGAAAGAGCGAT 2951755 32 100.0 35 ................................ AATCCAAGCATTTCTTAATTGTTCAATGTTCATAT 2951688 32 100.0 34 ................................ CCTGTCCGACAAGCGACTGTACCAGATCTCCCAT 2951622 32 100.0 34 ................................ TTGTAGGCCCATACCCCTTTTAAACTGGTAATCA 2951556 32 100.0 34 ................................ ATAAGCGACTCTGCATATGCGGAGAGTGTTGGCC 2951490 32 100.0 34 ................................ CGGCATAACCGAGCACCGCCGGAATCCCTGCCAT 2951424 32 100.0 33 ................................ ATCGCAATACCTCCTCCCGGGCATATGCCATAA 2951359 32 100.0 34 ................................ CGAAATTGATTTTCCGTGATAAAACGCTATATGA 2951293 32 100.0 34 ................................ CGTGTAATCCAGCTCCGCCGTCAGCCCCGGTCAA 2951227 32 100.0 34 ................................ TAGGCGTGGGCCCTTTGTGTTAACCAGAAACCCA 2951161 32 100.0 34 ................................ GCGGAGATAGAATGATCTTGTATAAGCAGTCAAG 2951095 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 112 32 99.9 34 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : TACTCAATGGGACATTGAGAGAAGCCTATCTGAAACACCGTTCAAGAAGCGAGAGAAAGCAACGGAACTTGAAACAATTCATCAGGATGTCTCAACTACTCAAGCAGCCTGTACGCCCGTCAGTGGGCGTAAAGCACGGATCAGTTGCCCTGCATTCAAGCAGTTCATCGGCAATGGGACATTTAAGCAAAATATTAGAGCTTTCGTTTTAAGCCTGGCTCAGTGGGGACTGATCGTTGAGGCGCGCGAAATTTACGAGACTCCTGCGGGAAAAGCGAGCCAGGAAAGACCCCGCAGCGAGGTACGAGCGAGGAGGCTCGCCGGCCGCCCGCGGAAAGCGAGTGAATTTCGCGCGCCTCAACATCCCCGTTATCCATCTTTATACGGAAATATTACATCTTTTCCGAAAATTACACCGAGCAAGTAAAGCACGGTAGCCGAAAGTGTACAAAAAGAGTGTCTTGGAATACCCGATATTTAAACCTTGTCGAGAAAAACTT # Right flank : CGTTTGCTGTATTTGCGATCCCTAGGATCATCAAGTCGCTCCCTAATGAATACTTGCTGAGCAAACCAGACAAAGCCTTGTATCTGGTTCGCTCAGCCGCAAATCTGGTTGATGCCGCCTTCTTTGTTCCTTCCATCAACCTTAGACCCGAAAAGTGGCGCTGAACGCGCAGATACCAGTGACAAACCCTTTTTGTAAAGTAACTCTTGTTTTTATAGTTCCTGGAACCGGGACCAGGGCTTTCCTTATTCAGCAGCCCCCGATTATGTATTTCTGTCATCCTCGTCGTCCAGTTCCCTGATCAAATTCCAAGTCTGATAAATCCGGTTTGCCATTTTCTCAGGATCTTTCAGCATCATTTGGTATAAATCCGGCTCATGGCTCAACGTTTCAAGCAGTTTCTTTTCCGGATTACTGACCGCTTCATTTGTCTTCAGGCCGGCATGGTTGGTAAGGCCCAAAAGATAATCAATTGAAACTTTTAACACTTGCGAAATACG # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 2961105-2960213 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP025437.1 Weizmannia coagulans strain LA204 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 2961104 32 100.0 34 ................................ GCTCGCAAGCCAGGCAATTACGCGCGCTTCAATG 2961038 32 100.0 35 ................................ ATAAGCGTATAAGTCAGCGATTCCGTATTGGGTTA 2960971 32 100.0 34 ................................ TGCAATCTCGACGGACCATACGCCGGCACGTGGA 2960905 32 100.0 34 ................................ ATTTTACCATATGTCGAAACCGAGAAGCAATTCT 2960839 32 100.0 34 ................................ CTTATGAAATGGAACGTTTTTTATAGATGGAAAA 2960773 32 100.0 34 ................................ GAGCCGATCATAGAATGCATTAATGAGCCTGATG 2960707 32 100.0 34 ................................ GTTGGTGTAAGTTGACTCCTCAAAGTTGTGGAGT 2960641 32 100.0 35 ................................ GACTCAAGGATATGTTGCAGATTTAATTGGTGTCG 2960574 32 100.0 35 ................................ GAGCTGGCGGAGTAGGTGGCTCCGCTTTAGCTCGG 2960507 32 100.0 34 ................................ CGTATACATGTTTCCAAGATTGCCAGGAAAGGCC 2960441 32 100.0 34 ................................ TTTGCGCTTATCCTGGAATTCAGCTTTTGTAATC 2960375 32 100.0 34 ................................ GAAAATGGATTTGCCGATTGGGGCTGAATACATC 2960309 32 100.0 34 ................................ AAAAATGGTGTATTTAAAACAAAAAATTATACGA 2960243 31 81.2 0 ...................TA..TG.A-.... | ========== ====== ====== ====== ================================ =================================== ================== 14 32 98.7 34 GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Left flank : AGATGAGTATCCTCCTTTTCTGTGGAAGTAGGTGGAAAATTTTGCTTGTTGTCATTACTTATGATGTGAGTACTTTGACCGGAGCAGGGCAGAAGAGGTTAAGAAAAGTAGCGAAAGTTTGTCAAAACTATGGCCAGCGTGTCCAGAATTCCGTTTTTGAGTGTTTCGTTGATGCAACACAATTTGCCTCTTTGAAGATTGAACTGTCTAATATTATTGACCCAGATGAAGATAGCCTGAGATTTTATCAGTTGGGAAACAACTATAAAAATAAAGTAATGCATATCGGGGCAAAACCATCTTTGGATTTAGAAGACCCCTTGATCTTTTAGTGCGAAGGTGTAGTGCACACGATTTTCCCGTGTGTTCGCACCAATATGCTAACCAATATTTTACATATATTGGTTAAATGTGGAAAAATAGTCCTTTGTTTATCAGAGGAAATGGCGAAATTTGGTTGTTTTAAAAACGTACATTCGCCTTTTTGACCAAATTCCGCT # Right flank : TTTACTCGAAGGGGCAAATGAGTGGAAAAAAATGGGAAGACGCTCTATCATCTAATTGTACACTTCAAGATGAACATCTAGAGAGAGAGGTCTTCCCATGGATATTATATCAATAATTGCTGGATTATTAAAGGATACAAAGAGTCTTATCGAATTTGAAGAACAGCTTAAACTTCTGATGCAGAAGGCTTTTACACAATGGGTTGGGGAAATATTTGAAGAGTTAGATAAAATAATTAAACAGGAGAAGTTAGAGGAGGGCTGGGTGTACTGCCGGAGTGATAACAGAAACATTCAGTTTCTATTTGGAAGTGTGACCTTTAAACGCTCATTAATGCATGACAAGAGAGGAAATTCCCATTATCCTCTGGATGAATGGTTAGGGCTGGTACCACACCAACGATACAGCCCGTTAGTGGAATTAAAGGTGGCAGAGTTGGCAAGTGAGAACACCTATCGGGAAGTAGCTGATATTTTAAAAGAGTGGACAGCAGTGAGTC # Questionable array : NO Score: 9.20 # Score Detail : 1:0, 2:3, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCTACATGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCTTCACGGGAGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.90,-5.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //