Array 1 114936-114490 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVIE01000035.1 Providencia stuartii strain Crippen contig_13, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 114935 28 100.0 32 ............................ TCAGAAAAAAGAGGATGTGAAAGTTAAGCGTA 114875 28 100.0 32 ............................ CCGTGATATCTTTATTAAAATGTTCATCGTCG 114815 28 100.0 32 ............................ AAGATATGATATAGTAAGACTTCCTAACAACT 114755 28 100.0 32 ............................ TCAAGGGTATCGACGGCCACCTGTGCCGAGGC 114695 28 100.0 32 ............................ ATTTGCGGACAACGCGCGACAATTCGCAAATC 114635 28 100.0 32 ............................ GTTCGCCGGCTCAATGGCTATTTTTATGAACA 114575 28 100.0 31 ............................ AGTATAGGGAAGCTGAGAGATAGAGCCCCAA 114516 27 89.3 0 ..........A....A........-... | ========== ====== ====== ====== ============================ ================================ ================== 8 28 98.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : GCGGTCAGATTATAGTGCGGTCTTTTTCTTTATCTACACAAGGCTCTATTATGCCAAATATCACTATCGGCGCTATTGTCGATGGTGGTTGGCGATATTAATTACGGTGTTATCACTGGTGCTATTATTGGTGTCACAGTCGCTGTTATTGCTTCTAAAAATAATTGTAAGAACTCCTGTTTTAGTTCCGAGTACCTTGTGAGCTTTCGTGATTTTCAGCCGACAAGCGGTATTCTTCTGGCATCGCCAGTAATGTTAGTTTTTCTCCTTAAGATCTTTTAATTTTTTCTATGAAGTCGCTATTGCTGATTCTCTTATTTTCAAATTTTGATTGTTAGCCTTCACGCACCTATGGGCTTATGATTGTTTACCTTCTATTTTTTAAGCTAAAAAATAGTTATTTAAAACAATAAGTTAAATAAACGATAATAAAATAAGGTATTTTTGGCTATTTTGAGATAACTTATTGTTATCGAAATTATTTTTTATGGTAGTCTATA # Right flank : TTTTTTAATACTACAACTCAAAATAGTCGTAAGTTGTAATTTCATATTTATTATCGTAGGGATCGGTGAAGTAGACTGATAAAGACACCTCGTGGTCGATAACTGAAATTGGAACATTACAACTTGTTAGATGCTCTTTGAATTGCAAGAAGCTGGTTTTATCAACACTAAATGCTACTGTGTTTCCTCTATTTTGCGTTGTTCTTTTAAATAGAGATAAATAAGCATCACCATTGTTGATTACTAAAGGGCCGCCTTGCTCAAACCAAAATTTAAAACGTGGGGTTATTTCAAAAGAGAGTATATTTTTATACCACTGAATGGCTTCATCAAGGTCATCAACATAAATATGAACATGGTCAATTGCTATAAATCTCATGGTTTTCTCCTCTTATAAAAGACCTAACGTACTACTTTTTATCTGTAATTTATAAGCTACAATGGCTTTATCCGTATAATTGCATTCTCATATTGCTGAAAAACAATACAGGTTATTATGG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 46560-47188 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVIE01000079.1 Providencia stuartii strain Crippen contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46560 28 100.0 32 ............................ GTTCGTGTAGGGCCAAGCAAAGCTCACGCAAT 46620 28 100.0 32 ............................ AGTTAGGAAAAACGAACGTAGTTTACCGTGAT 46680 28 100.0 32 ............................ GTGTTATATCCAGCGGATCCGGTTCGTTTATT 46740 28 100.0 32 ............................ ATATGCTAGTTACACTGGAAGCGCTATTTCAT 46800 28 100.0 32 ............................ GCAAAAATTGCAGAAATAACAAAGCGGCTAAA 46860 28 100.0 32 ............................ GAGCCAACGAGGGCGGTAGTTCAATATCAATC 46920 28 100.0 32 ............................ ATAATGGACTATTTCATCTAGCCCAGCCCGCT 46980 28 100.0 31 ............................ AAACATGCGACTGCCGCAGCACATATCTAGT 47039 28 100.0 33 ............................ CTAAGCCAATTGCACTTGATGACGCAGCACTGA 47100 28 96.4 32 .................T.......... TATGAAGGTTACGGGTACTCGTGTGCGCAACA 47160 28 89.3 0 .....................AC.T... | C [47186] ========== ====== ====== ====== ============================ ================================= ================== 11 28 98.7 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AGACCAAATTTCTAATATTGAGTCTAAGCAAGGTTTACAATTACAAGAAATTGATAAATTAGATTTTCTTGCAGATTCACGCAGTATCCAAAATAGCAAACGAGTCAGTGAATTGTTGGAAACAAATTGGACTGGTACGACATCAGATTATTATAAAGAGATGGCGATGTTCCAAGCTTCACAGGATATTTTTAAAGACTTAAATAGTATGTCGCTGTTTGGTGGTCGATAAGTGATTTGCCAGCACTGATTGTTTGATAGAGGTGCTGGCTTAATTCGTTAGGGATAATCTATTTTTCTTTATTGGTTCAATAGCAGTAGATATTGTCTTTTTTGATATTCATTTTGATTCGTTATCCTTCTTAAATTACCTTCTATTTTTCCATATTAAAAATAATAAGTTAAAACAATAGGTTAAGATACACCTTATAAAATAAGGTATTTTTAACAATTTCGGGCTAGTTTCTTGTTATCTTAGATGTTTTCTATGATAGGCTATA # Right flank : ATCAGTCTTAATGACAAACCAAGGTAATGACTTGCGTACCTTGTTGTTGCCAATACAATATCCATCTTTCGCCTTTTATGTGTCCAGCGAGATCATTTGTTAGCTCAAGCGTCAGTGTATTATGGGTAATGTTAATGATTTGTGAGCTAAAAAAATCAATACCTTGTTTTGCATCATAACAGAGTGCCTTGTATAAACTCTCTTTGGCACTAAACGCGAGGGTGATAGCGAGAGGAAAAGGCCAGCCAATCAAGCCATCCAATGCTTCTGATGGGGCGTTTGATGCCTCATGTAATACACAATCAGGGTTAGTACTTCTATCAACACGGGGTATAGCGAGGACAAGCGTATAATGTGTCATAAATTACCTCTTGTTGCTGCTCAGCCCGCGATTTGGGCCGCTGAACGCTTGTATACAGAATACCCTGCTTGGAGCGTTGCACATTATGTCGAATTGGTCGGCGAACTTAATGTCACGCAGCTAAAGCAAGCCATTATTA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 56744-57491 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVIE01000079.1 Providencia stuartii strain Crippen contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 56744 28 100.0 32 ............................ TTATTATGATATTACCTATTAGCTTTTAGTAA 56804 28 100.0 32 ............................ CCAGAACAGACCCAACAGAACGACCACAAAAA 56864 28 100.0 32 ............................ ATTCACTAACGCTTGATGGCTGATATCGACCT 56924 28 100.0 32 ............................ AGTATTGCTCAATGAAGATGGCACACTGCATA 56984 28 100.0 32 ............................ TATCGAAGTTGTGCGCAAGCCAACAGAGTACG 57044 28 100.0 32 ............................ AATCACGAATTTACGGCCAGATAGCGGAGTTA 57104 28 100.0 32 ............................ GCTTTTGGGATTGAGGATACCAAACGTATCAG 57164 28 100.0 32 ............................ CATATGTCTAGTAGTCCTGAGTTAAAAAATAA 57224 28 100.0 32 ............................ AGAAATGAACGCGCCTTTTATCTGCACTTTAA 57284 28 100.0 32 ............................ GCTCACCGTTGCGCTTCGCGGCAGTTCGTTTA 57344 28 100.0 32 ............................ ACGAAAAAGAGAGTTCAGGCATTTGCCTGACT 57404 28 100.0 32 ............................ GTACGCTACGGCTTATTGAACTTTTTAGGGTT 57464 28 85.7 0 ..........A.............ATG. | ========== ====== ====== ====== ============================ ================================ ================== 13 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : AAGCAGCATTGAAAAGTTTAGCTTTAACGGTAGGTTTAGAACTGTCTAGTAGTGCGGTACGTTCTAATTTAGTCTCTCCAGGTTCAACGGATACCGATATGCAACGTATGCTGTGGGTGAGCCATGATGCAGTTAAACAGCGGGTTTCAGGCGCCGCAGATCAATTTAAATTAGGGATCCCCTTAGGGAAAATTGCTAAACCAGATGAAATTGCCAGCACCATTTTGTTTTTAGCTTCAGATGATGCAAGTCATATCACCTTGCAAGATATTGTGGTCGATGGAGGCTCAACATTGGGGGTATAGCCCCCAGTGTTGTATATCGATACACGATTTTATAATGTCTCTATTCCATCTTAATCTTGATTGACCTTGTGTTTTTTGTTATCTATTGATTGCTAATAAAATCAATTGGTTATAATGATAAGAAAAAAAGAAGGTGTTTTACGAAAAAATACAGTAATGAATTGTTGTCTAAGACATTTTATCTGGTAAGTTATA # Right flank : ATTGTTACCATCGAATGCTTATTTGTTTTATTAAAAAGCACATAGTAACCAATTGAAATTAGACAATCTGAATGCAATCAATGAGTTATTTTTATTCACCAACTCTGCGATCATCTTCCCAAAATTGCATAATAATGCATAACAGTAGGTCAATTGCTATAGACATTCCATAAGGTAAATTGTATTAACATAGTAATGTAACTTACCAATCTAATGGAAAGGCCAAATTTACATGGATGATTTTTCCCCTTCAGATCTAAAAACAATTCTGCATTCTAAACGTGCCAATATGTACTATCTAGAGCATTGTCGAGTGATGCAGAAAGATGGGCGCGTGCTCTATCTCACCGAAGCAAAAAATGAAAATCTTTATTTTAATATTCCAATCGCTAATACAACGGTTCTGATGCTAGGCACAGGAACATCGATAACACAAGCGGCGATGCGGATGTTATCTCAGGCAGGTGTGCTTGTTAGTTTTTGTGGTGGTGGGGGAACGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 66479-67167 **** Predicted by CRISPRDetect 2.4 *** >NZ_LVIE01000079.1 Providencia stuartii strain Crippen contig_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 66479 28 100.0 32 ............................ ATTCTAATTATCGAAATCCTAGACAGCATTAC 66539 28 100.0 33 ............................ TAAATGTGTACACGAAGACAATACTTACTACAT 66600 28 100.0 32 ............................ TGTGGCATTATATCTATTGCATAGAATAAAGT 66660 28 100.0 32 ............................ ATGACGAGACTTATCTATGTCAGCCATAAAGA 66720 28 100.0 32 ............................ AGCCCGAGCATTGCTATTCTCATTGGTGTAAT 66780 28 100.0 32 ............................ AGCAATTAAATCAATAAACGGAATGTGTATTT 66840 28 100.0 32 ............................ CTCACTGACTGCCCACAGCATATTTTGATAGT 66900 28 100.0 32 ............................ AATAACGTCGAATGTACAGGGCGTGCAGTTTA 66960 28 100.0 32 ............................ AGACGGATTAAATTTAACACTAGACTATTATC 67020 28 100.0 32 ............................ GTTATAGAATGTCGTGAAACACTCACTAAACG 67080 28 96.4 32 .........................G.. CATGAACAAGTTTTCTCAATTGCCCGCTCTTC 67140 28 85.7 0 C......A.....T...T.......... | ========== ====== ====== ====== ============================ ================================= ================== 12 28 98.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATCAATTCAACTGGTGCCTGAATACGCTACGGCGGTTAGCTATGTACGCCAACATGTAAAGGGTGAAAAACGGATCCAGTTGGATATGCAAAAAAAGGCGCAACTATATGCAACTAAATCCGGTTTGTCGGTTGAGGCTTGCTTGGCACAGCTGAAGGAGAAACAGCCGAAAGCACAGAGCCGTTTGCCGTTTTTATGGGTTGAAAGTCAGCAAACTAAATCACGGAATGAAGCAAGTGGGCACCGTCCGTTTCCACTGTTTATTAAATGTCTTTCAGCCGAAAAGCCACAAGCAGGTTTGTTTAATTGCTATGGATTAAGTCAAGCAGTTACTGGCGATATAAAATTAGCAACGGTTCCACATTTTTGACCTTGTTTTTTTGCTATTTTAAAATTTGATATTAAAACAATGGGTTACAATAAGTAGAGAAAAAGAAGGTATTTTTGTAGAAATACGCTTAACGACTTGTTGTAACTTATTTTTTATTTGATAAAGTCTA # Right flank : AATCTGTGACCTACGGCTTAGAAGGCCGTTGTGCTATGTTTACTGACATATATGTAGTTAGATATAACTTGAGAGCGAAAGTGTTAGAGTTTAATTAATTTTCTGGAGTCCGATGGACTAAAAAAGTGATTGAAAGGATACTGTTGATTTAGATGTAAAGAAAAATAGAAAGACATTACAAATTTTAATTGTTTGAAAATTTGTAATTTTTAATGCATTCCTTTAACTTTTTACTATGTATTGTGGTAATCACATATGCCTAATTTTAATGTTTTTTATAAACTAAAAATACTCACTGCCATCTAGGTAGCTTAGAAAAGGTTATTTTATTGTTGATTAAGCACTTACTGCCATATAGGCAGCGTTTAAAACGTTATTTCTAATTAAAGTATTACAGATTTTCTGTGTTTTATCTCTATACATAATTTTTTGTGGATAATTGCCAGATTATTTTAGTGTTGTTTAAATGTGATTATATAAAGGAACAATTATATTGCTGA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //