Array 1 65455-63551 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVZ01000004.1 Salmonella enterica isolate STY186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 65454 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 65393 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 65332 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 65271 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 65210 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 65149 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 65088 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 65026 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 64965 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 64904 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 64843 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 64782 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 64721 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 64660 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64599 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 64538 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 64477 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 64416 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 64355 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 64294 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 64232 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 64129 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 64068 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 64007 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 63946 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 63885 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 63824 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 63763 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 63702 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 63641 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 63580 29 96.6 0 A............................ | A [63553] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 83079-81586 **** Predicted by CRISPRDetect 2.4 *** >NZ_OEVZ01000004.1 Salmonella enterica isolate STY186, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83078 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 83017 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 82956 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 82895 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 82834 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 82773 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 82712 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 82651 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 82590 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 82529 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 82468 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 82407 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 82346 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 82285 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 82224 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 82163 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 82101 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 82040 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 81979 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 81918 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 81857 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 81796 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 81735 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 81674 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 81613 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //