Array 1 501703-503133 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPV01000001.1 Thermopolyspora flexuosa strain JCM 3056 sequence001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 501703 29 100.0 32 ............................. GCGCCCGGCTCGCCGGCGAAGGAGAACAGGGC 501764 29 96.6 31 ............................G TCGTGGAGCTGGCCTGGGACTGGGTGCTCTT 501824 29 100.0 33 ............................. CCGCTTGCGATCTTTTGGGGGTACCCCCCACAA 501886 29 100.0 32 ............................. TGCTCCCGCTCGGTTCGGGCGGTCTCCATCAG 501947 29 100.0 32 ............................. TGGTAGGTCTCCTCGCCTTCGGCGCCGGGCGT 502008 29 100.0 32 ............................. GGCCTCCAGGGCGCGGGCTGATCCCGTCTCGT 502069 29 96.6 32 ............................G ACCGAGAAAGGCGAGGACGCCCCGGTCAAAGC 502130 29 96.6 32 ............................G CAGCAGGTCACCGTGCTGCATGTCCACGGCGA 502191 29 96.6 32 ............................G TCCGCGGTCCCCTTGAATTCGGCGATCTTGAA 502252 29 100.0 32 ............................. TGGCCGCGTTTTTTGAACCAGTCGACGCCGTT 502313 29 100.0 32 ............................. AGGAGTAACTGAGCATGGCCGTGAAGAAGATC 502374 29 100.0 32 ............................. GGCTCACCGTCGAGCTGGTTCTCTTGCAGGCC 502435 29 100.0 32 ............................. GTGGTGGAGATCCACCAGGAGGCCGTCGAGCT 502496 29 100.0 32 ............................. CGGCGGCTGAAGGCGTCGAACCGGGCGCTCGT 502557 29 100.0 32 ............................. TCGCGGCAGGCCTCCTCTTGGACCTCCAGGCC 502618 29 100.0 32 ............................. TTCACCGACCAGTACCTGCTCGCCCGCCCCGA 502679 29 100.0 32 ............................. GGGATCTCCGGAAACTGGCAGGCCGGGTTCGG 502740 29 100.0 32 ............................. GACATCGACGGGTGGGAGCGGGAGATTCGCCG 502801 29 100.0 32 ............................. ATCAGCGCCGCAGCGCTGGTGCGCTCCATCGG 502862 29 100.0 32 ............................. CTTCCTGCATATATGGAAGGTGTCCGGTACTA 502923 29 100.0 32 ............................. CGGCATCTCCGGCTCCGCGGCCGCGAGTTTGT 502984 29 96.6 31 ..................A.......... TTGTAAGGGATGTTCACACGCTTGTAGTGTC 503044 29 96.6 32 ........T.................... GCCTACGCGCTGGCGCTCCGCGCGTTCGAGGC 503105 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.1 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : TCATCACCCACCGGCTCCCGCTCGACCGCGTGCTCGACGGCATCGGCATCGTCACCCGCGGCGAGGCCATCAAGGTCACCGTGGAACCGTGACCCCACCCAGGAGGAAGGAAGACGGCCATGCCCGAGAGAAAAGTGACGATCGCCGCGAAGACCGGCCTGCACGCCCGCCCCGCCAAGCTCTTCGTCCAGGCCGCGGCGAAGACGGGCGTACCCGTCCGCATCCGCGTCGGCGACGGCAAGCCGGTCCCCGCCAACAGCATGCTCGGCGTCCTGTCCCTCGGCGCCACCCACGGCACCGAGGTCACCCTCGAGGCCGACGGCCCCGGCGCCGACGACGCTCTCGACACCCTCGCCGCCCTGCTCGGCAGGGACCTCGACGCCGAGCCCACCGGTGCCTAGGGCTAACAGCCTGGATCGACGAGGTTCGGCGATATGTCCGTTTCCAAAGAAGTGCTCGGAAACAGCCTGTCCCCCGGATAAACTCGCAGGTCAGTAAGT # Right flank : CCCCTGTCGCCAATATCGAGCGACCGCGCACACGGGATAATTCGCATGACCCCTGATCGGAAAAATGCTCACTCCGGGCACAGGTCGTGTTTCATAAAACCGACTGCCACCCGTTGATCACGGTGATGACTTAGGACAACCTCGTGCGGCATGCTAGTCATAACGCGTGACCATTCCCTGGTTGCGTTTGAGCTGACGCCCACTCCACGGCATGCCGCAGCCCGTAGGACAGCGGGTCGCAGGCGGGAGTCCGTCCTCCCTGGGCCCTCTTGGCCTTCCGGTGGGCGCCCTAGTTCGCCTTGCTGGGAGTGCACGCCCTTGAGACTGCACCTGCGCAGGCACGCGCGATTGGTCGTGTTGGGGTAGACCCGGCCACCATCACCAGATCCGGGCCTGTCCGGAAACGGCCCCACCCAGGTGTGTCGCTTTGATGCCGCCAGGACCCTGGCGGTTATGGACTGTCACTCGCGCCCGCCGACCATCACCATCGCCAGCACTAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 504894-503704 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPV01000001.1 Thermopolyspora flexuosa strain JCM 3056 sequence001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 504893 30 93.3 31 .........T...................G CGGCGCGCATCCGCTCGTACCGGCGCGCGTA 504832 30 93.3 31 .........T...................G GGCGGGTCGTGCCGGGCGCGGTCTCGAGCAG 504771 30 93.3 31 .........T...................T GGATCTGCCGCGAGGGCGAGCGGACCGAGCC 504710 30 96.7 31 .........T.................... AAAGCCCGGACCGCGTTCACGTGGCGACTCA 504649 30 96.7 31 .........T.................... AGGAGCCCTTAACCCGGGCGGCCGCGGCCCG 504588 30 96.7 31 .........T.................... TCGGGCTCCATGAGCAGGATGCCCTCGCTCA 504527 30 96.7 31 .............................T TGCCCAGCCCCATGCGGGAGCTCATGCGGGA 504466 30 96.7 31 .............................T TGCCCAGCCCCATGCGGGAGCTCATGCGGGA 504405 30 100.0 31 .............................. TGCGAGGGGCTGGAGATCTTGAGCGCGTCCT 504344 30 100.0 31 .............................. GGGCAAAACGGACACGGCTTCGCGCCACGCT 504283 30 93.3 32 .........T...................T CTCCACCGGACACCCCCCCTTTTTTAGTGCGT 504221 30 96.7 31 .............................G GGTCGGGATGGTGCGGGTGCTCATGACTCAC 504160 30 96.7 31 .............................G AGGCGCACCACCAGCACCTCATCGACCGGAA 504099 30 96.7 31 .............................G TCAAGGACCTGAAGGTCTACGACCAGTGGGC 504038 30 96.7 31 .............................A TCCAGCGCGCCGCGATCCAGGGCCAGACCGA 503977 30 96.7 31 .....T........................ GGCCGCCGCCGGCCGACTTCTTCAGCTCGAT 503916 30 100.0 31 .............................. GCGGGTTCAGCAGCGATCACGTGGCCGTCGG 503855 30 100.0 31 .............................. AGGTCATCAAACCGGCGTGGGATGGGATTTC 503794 30 100.0 31 .............................. TGCGAGCCGAGGGACAGAGCGAAGAAAATCA 503733 30 96.7 0 .............................T | ========== ====== ====== ====== ============================== ================================ ================== 20 30 96.8 31 GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Left flank : CCTGTGCCGGAAGCCACCCGTCCCACAGCAGCCCGGCTACGGCACCGCTATCCGCCATGTGCCGCCACAGTGGCAGCCAGCCCTCACTATCACGATCATGTTTGGCCCAGACCGCCCGCGCCGCCCTCGATAAGCCGTTGGACAGCCCTTGCCCTGATCCGCCCTCCACGCCACGAAACCCAATATGATTGGCCGCAACCGAACATCTAAAGTCACCAAACTTTTATGAAATTGAGATCATGGATCGCTCTCGCGATAAACGAGTGCAGGCTTCACATTTTCCAATAATCGGACTTATGGGTTGTTCTCTGTCTTTCTGGGTCGCCAAGCTTGCCTCGCTACGATGTCGGCATCAAGCCGACCTCTTCACGCTTACTCCTCAACCGGCCTCGGGTTGGACGGCGAGTTGACCTGCCACGAAGACGATGTCCGGTATGTCCAAATCTCGACAACTGCTCGAGAACTGCCGCCGCCACGAATAAACGTGCAGGTCAGCGAGT # Right flank : CGTCCTGCTGCAGCGCGATGCATCCAGCTAGTCCATGCCGAGACCGCTGCCTGCAAGAAGAGCCGCCACCGGTAGTGCTGGCGATGGTGATGGTCGGCGGGCGCGAGTGACAGTCCATAACCGCCAGGGTCCTGGCGGCATCAAAGCGACACACCTGGGTGGGGCCGTTTCCGGACAGGCCCGGATCTGGTGATGGTGGCCGGGTCTACCCCAACACGACCAATCGCGCGTGCCTGCGCAGGTGCAGTCTCAAGGGCGTGCACTCCCAGCAAGGCGAACTAGGGCGCCCACCGGAAGGCCAAGAGGGCCCAGGGAGGACGGACTCCCGCCTGCGACCCGCTGTCCTACGGGCTGCGGCATGCCGTGGAGTGGGCGTCAGCTCAAACGCAACCAGGGAATGGTCACGCGTTATGACTAGCATGCCGCACGAGGTTGTCCTAAGTCATCACCGTGATCAACGGGTGGCAGTCGGTTTTATGAAACACGACCTGTGCCCGGAG # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.36, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGGTCCCC # Alternate repeat : GTGCTCCCCTCGCACGCGGGGATGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGGTCCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [38.3-45.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 514445-516060 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPV01000001.1 Thermopolyspora flexuosa strain JCM 3056 sequence001, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 514445 29 100.0 32 ............................. TCCCCGCCGGCGGCGAACTCGGTGACCGCGCG 514506 29 100.0 32 ............................. TGGTCGATCTGCACGCCGTACCACTCGAAACT 514567 29 96.6 32 ............................G GCCGCCAAGGACGTCGTCAATAATGCGATCCG 514628 29 100.0 32 ............................. GCCACTGCTGGAGCGAGCCGTACGACGAGCAG 514689 29 100.0 32 ............................. ATCTGGCGCGCCCTCTTCGACGCCGCCAAAAA 514750 29 96.6 32 ............................G ACCACCCTCGTCGGCAACCTGGTGCGGTCCTT 514811 29 96.6 32 ............................G AATACGTCGGTGCCGCGGTAATCGCGAAAGCC 514872 29 100.0 33 ............................. GCATCACCCCACTTGGCGCGGCACACGCACGGC 514934 29 100.0 32 ............................. ATCAGCGCAGGTAGTAGCCATCAGCGCAGGTA 514995 29 100.0 32 ............................. TACTGGATGCGCAGGCTCGCGGGCGCGGTGTG 515056 29 100.0 32 ............................. TCCGGGGTGCTGCTCCCCGAGCATGGGCGGGG 515117 29 100.0 32 ............................. CACTCGACCGGCCGGGTGAACGGCGGCCCGGC 515178 29 100.0 32 ............................. AGCCCTTGGACCTGGCCGACGAGCCAGTTCCA 515239 29 100.0 32 ............................. GAGGGCGACCACGGCGGCGTGCAGGGCGGGCT 515300 29 100.0 32 ............................. CTCAAGTTCGGTTTTCAACGAACCGAAACGGG 515361 29 100.0 32 ............................. TGGCAAGGCGGCCCCGACCCAGCCGACCAAAG 515422 29 100.0 32 ............................. GCCCTCTACCGCCTCGCCGTGCAGCAAGAGCC 515483 29 100.0 32 ............................. TGGGCCGCGGCCGGGACGAGGGTGAGGTCGAG 515544 29 100.0 32 ............................. GCCTTCGGGCCACCTACAGGAAGCGCGCCGGA 515605 29 100.0 32 ............................. CGCTGGCGGTGGCTCGCCGACAAGGCCACCCG 515666 29 100.0 32 ............................. GACTAGGCCCGGGATGGTGCGTAGGCCGCCCC 515727 29 100.0 32 ............................. CCATCGGCGAACGTCGCCGCCAACCTCTGCGC 515788 29 100.0 32 ............................. GCCACGGCGGGGTCATACCCCACGCGGACGTC 515849 29 100.0 32 ............................. GACATCGCGCTCGACCTGGGTGACACCACTCC 515910 29 100.0 32 ............................. GTCGATCTGCTCTCCCGGATCCAGCGCACGGA 515971 29 100.0 32 ............................. CAGAACCTCGGCCTGGACAACTTCGGTGGCGA 516032 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 27 29 99.6 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : GGTGGAATGGTGACGATCGTCGTCCTTACCAACTGCCCCGTCGGTCTCCGCGGCTTCCTGACGCGATGGCTCATGGAGATTTCACCAGGTGTCTTTATCGGCAACCCGTCAGCGCGCGTCCGAGAGGCCGTGTGGACCGAGGTGCAGGCCTACGCGAACACAGGCCGGGCCCTCCTCGCCTACACCACCGATAACGAACAGGGCTTCACCTTTGAGACTCATGACCACAAATGGCATCCAGTGGATCACGAGGGCCTCACCCTGATCCGTCGCCCCAAGGAAGGAGCCGGCGTTGCCGCTGTTCCACCTCCGTCCGGATGGAGCAAGGCGGCAAAACGCCGCCGTTATGGCAGACGTTAAGCAGTTCGCCTCTTACCCCACCGATGGCCGCACTACCTCCGGCGACTGGCACCCAGGCCGATGAGGTCGGCGATATGTCCGTTTCTGCAAAAGTGCTCGGAAACCGCCTCGTCTCCGCCTAAACTCGCAGGTCAGGAAGT # Right flank : CATGGAGGGCCACGTCCGCTGAGGTGGTGTAAAAGCAGCCACCGCGTGATCCGTTTCCCGCAGGTTAAGCGGTAAGCGACTCAGGAAGCCGCTCTTGGTCCGGTGTGCCGCCGGCAATCACCTGAAGCCGGATCTTGGCCAAGATGTCCAAGCCCATGGAGCGGCGGGATTCGGTCCACTCGCCGGTCTGCTCGGCCAAAACCGCGCCGACCAGCCGGATGATCGCAGCCCGGTCCGGGAAGATCCCCACCACATCCGTGCGGCGGCGGATCTCTTTGTTCAGCCGTTCCCGGGGATTGTCCGACCAGATCTGCCTCCAGATCTCCCGGGGGAAGGCGGCGAAGGCCAGAAGGTCGTCACGGCCCGCATCCAGGTGGTCGGCGGCGGCAGGATACTTGGCTGCAAGGGCGTCGACGACCCAGGCGTGCTGGGTGCGCATCTGCCCGGCCGATGGCTGGTCGAAGATCGTGCGGACCAGCGTGGCGACCCAGGGCTGGGCG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [45.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 520002-517473 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPV01000001.1 Thermopolyspora flexuosa strain JCM 3056 sequence001, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 520001 29 96.6 32 ............................G GCCAAGCGGATCGCCCGCCACATCGCCAAGGC 519940 29 100.0 32 ............................. GAACGCAAGTACAGCGACCCACCAGGCATGCC 519879 29 96.6 32 ............................T GTTGGAGTCACAAGCGAAACGTGAGGTAGACA 519818 29 100.0 32 ............................. GCGAGGTCGAGCCTGGTCATGGGCTCGACCCC 519757 29 96.6 32 ............................G CGGCAGATGTACGGCGAGATCGGCCTCAAGTA 519696 29 96.6 32 ............................G GAGCAGGACGCCCTGATCCGGGCGCTGGTGCG 519635 29 100.0 32 ............................. CGGCTGTCCAACCTCGTGCTGTGCTGCGGGAC 519574 29 100.0 32 ............................. ATGGGGAGCACGACCAACTTCGGTGCCGGGCA 519513 29 96.6 32 ............................G CACGGTGAAGGCGTCCCGGGTGGCCTGGTCGG 519452 29 100.0 32 ............................. TGGTTTGGGGTGCGGGTGTGATGGATTGGGTT 519391 29 100.0 32 ............................. AGTGCGGCCCCCGGGCGGCGATCGAGGCGCCA 519330 29 100.0 32 ............................. GCGGACTGCGGGATCCGGCGGCACCGGTCGCC 519269 29 100.0 32 ............................. CCGCCGATCAGCACTTCGGCGGCCGTCGCCTC 519208 29 100.0 32 ............................. ACGGACAGGTCGGCCTCGACGGCGCAGGAGCC 519147 29 100.0 32 ............................. CGCGCCGCCTCAGGGACGCCGATGCTCGAACC 519086 29 100.0 32 ............................. ACGGACAGGTCGGCCTCGACGGCGCAGGAGCC 519025 29 100.0 32 ............................. CGCGCCGCCTCAGGGACGCCGATGCTCGAACC 518964 29 100.0 32 ............................. GGCTGGAGCGCGCCGTGGCCGCCCGCCGGGCC 518903 29 100.0 32 ............................. GGCTGGAGCGCGCCGTGGCCGCCCGCCGGGCC 518842 29 100.0 32 ............................. GCCGACTACGACCCGATGAAGCCTCGCCTGCG 518781 29 96.6 32 ......T...................... ACCATCATGACGACTGAGGCGTGCCACCGCGA 518720 29 100.0 32 ............................. GAGGCGCAGGTGTGCCGCATATCGTGGATCGT 518659 29 100.0 32 ............................. AGCGCATTCGTGGGCGGGCGGGTCATGGTCTC 518598 29 100.0 32 ............................. CCGCGACCCCTCCGCCGCCGACGTCCCCGGCG 518537 29 100.0 32 ............................. TCCTCGTCGTTCAGCAGGGCCACGACGGCGCC 518476 29 100.0 32 ............................. GCCTCCAGATCGCCGCTGATCGCCGCAGCGAA 518415 29 100.0 32 ............................. TGTTCTTGCTAGTCAAGCTCAGCAAAGCCTCT 518354 29 100.0 32 ............................. GACGCACGCGCCGAAGGCCGCCTCCGCGGATT 518293 29 100.0 32 ............................. CCGCTCGAACCGACCAGCGCGAGCACGGCGTA 518232 29 96.6 31 ............................G GCCTCCAGGGTCGCCGCGTACTCCTCGTCGG 518172 29 100.0 32 ............................. CCGGGGGACGTCGAGGCGCAGCCCAGGTGGGA 518111 29 100.0 32 ............................. CGCTCGTCAAGCAGCAGCTCGCTACGGACCTT 518050 29 100.0 32 ............................. TCGGAGCGTCCGCAGACGATCGTCGCCTCGGT 517989 29 100.0 32 ............................. ACCGTCCGCAAACTCCAAGCCGCCGCCCAGGT 517928 29 100.0 32 ............................. GACCATCCCTCCTTGCTCGCGGTCTCCCCGAA 517867 29 100.0 32 ............................. GCGGCACCGACAGCCCTTCCGTACAGGTCGCC 517806 29 100.0 32 ............................. CCCTGGAGGGCGGTGGTGATCTATTGGGGCGG 517745 29 100.0 32 ............................. GGTTTGCCTACGGCGATTTCATACAGTGTCAC 517684 29 100.0 32 ............................. ACGGTGCTGCGGGCCGGGCCGTTCGGCACGAT 517623 29 96.6 32 .......T..................... AAGCACGACACCGTCTACGCCGAGCTGAACGG 517562 29 100.0 32 ............................. TCGCCCGCGCCATGCGCCTGTTCGAACGGCCC 517501 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 42 29 99.4 32 GTGCTCCCCGCGCACGCGGGGATGATCCC # Left flank : AACGCGGTGGTGCACACCCGCTCCGGCCGTGTCGAGGTGACCGTGCTGCCAGACGAAGACGGGACGGTGACGATCCAAGTCGCGGACCAAGGCTCGGAAACGTTCCCCTTCGCCTGCGGATGCGTACGCGACACGCTCGCCGAGTCCGGACGGGGAATCGACCTGATCCGCTCACAGGCACAACGCTGGGGCTTCACCGAAGAGCCGACGGGCGGCCTCCTCTGGTTTGAACTGGCATCGAACGAGGACGGGGCCACCCCCTCGCCAACGGTCGAGATTGCATGAGACCAGGCCCGAGACCCGAGCTACCGGGCGCACCCGTTCCCCTGGGCGCGCCCGGATCGGCCGGTTCGTGTCCGGATCCCGTGATCGGCCGTCCTGCAACGGGCGCGTTCTTCATACCTACTCCGAGGCGAAGTGAGGCCATGGGTGATATGTCCGTATCTGAAGAAGTGCTCAGAAACGGCTTGTCCGTCGGATAAACTCGCAGGTCAGGAAGT # Right flank : CAGCTGCGTCCACGGAAGTGGTGTAAGAGTTTGACCAGGTGACAGGAACGCCGCCGGACACACGAAGCGGCCATCGCGTAGATCCTTCGTGATTCCCGGTCAAGATCGAAGGAGGACAAGCGATGGCCGCCGGCAACAGCCTGGACCCCGCCGCCTGGCTTGCAGAGCAGATCCAGGCCCAGGATCCCGATCTGTCGCGAACCATGGTGAAGACCATGGCCGAGGCGTTGATGCCAGCCGAGGCGGACAGCCTCTGCAACGCCGCCTACGGCGAGCGCAGCGCCCAGCGGGCCAACCACCGCAACGGCTACCGCAAACGCGAATGGGACACCCCGCGCCGGCACCATCGAGCTCGCCATCCCCAAGCTGCGAAGGGGGCCGTATTTCCCCGAATGGCTGCTACAGCGCCGCCGTGCCGAGCAGGCCCTCATCAGCGTCATCGCCACCAGCTACCTTCTGGGGGCGTCCACCAGACGCATGGACAAGCTCGTCGAGCAGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGCACGCGGGGATGATCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCACGCGGGGATGATCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.10,-12.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51969-48765 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPV01000004.1 Thermopolyspora flexuosa strain JCM 3056 sequence004, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 51968 29 100.0 32 ............................. GCCGAGCGGGAACGCTGGCCGAGGCCGATCGA 51907 29 100.0 32 ............................. CAGATCAAAGCCATCGTCGGCGCGCTGGACAC 51846 29 100.0 32 ............................. CCGTCTGGCGCGGATCTCCGCGCTGTGCGGGA 51785 29 100.0 32 ............................. TCGGTGTCGGACCGCGCCTTCGACCGGGTGGT 51724 29 100.0 32 ............................. GTGTCCCGGCGCATCGCCACCGGCAGCGAGCC 51663 29 100.0 31 ............................. GAGTTCGGGGAATGTGCGGTCGTCCGGGATC 51603 29 100.0 32 ............................. CAGGCGGCCGTCCGCATCGGCATGTACGTGCA 51542 29 100.0 32 ............................. CGTTCCGGCCGCCCGCCGCGGTACGCCGCGAT 51481 29 100.0 32 ............................. TTTGTCCGGTCGTCCGAGTCGATCGCGGCCAT 51420 29 100.0 32 ............................. GCGTCGGTTATGCCGTTGTCCTTGGCGATCTT 51359 29 100.0 32 ............................. CGTACGACGGATCCTCGGATGGAAGACCGATC 51298 29 96.6 32 ............................A TCTTCTCGGCCACCCCGGCCGAGAACATCGGC 51237 29 100.0 32 ............................. CTGTACGAGGCGACCTACGTTCCGCCCAGCCA 51176 29 100.0 32 ............................. TCGTCCACCGCCCGGAAGGCCGCCTCGGCCGC 51115 29 100.0 38 ............................. AGGCCGCCGGGTTCGGCGGCGACCTGCCGAAGGCCTTC 51048 29 100.0 32 ............................. CACGCCGGCAGCGTGCTCGGCAAGGACTGGCC 50987 29 100.0 32 ............................. CCGCAGGTCAGAGGGGGTGTGTGTCGGCTGGG 50926 29 96.6 32 ............................T GCGCTGTTCGAGAAACCCGCGGTGAAGATGCC 50865 29 100.0 32 ............................. TCGACGGCCAGGCGACGCGCGATGTAGTCAGT 50804 29 100.0 32 ............................. CGTACGGAGCCGGGCTGCTCCTGATCCGGGAG 50743 29 100.0 32 ............................. TTCACTTCCGCCCCAGAGGCGGACAAAAAGCC 50682 29 100.0 32 ............................. ATTCCGGAGGCGGGCAACCCGGAGTTGTGCCC 50621 29 100.0 32 ............................. GCGCACTGGCGCACCTACCGGCGCCGGTTCCG 50560 29 100.0 32 ............................. CTGGTCCGCGCGCACGACCCCCGCCCCCGCCG 50499 29 96.6 31 ............................A CTCCAGAGCGCGCTTGGCTGAGCGAAGTTTC 50439 29 100.0 31 ............................. CACACAGCGGCGGCACGGCTCGGCGTCAGCG 50379 29 100.0 32 ............................. AGCCCGACCAGCGACAGCCACGGCCCGCGAAA 50318 29 100.0 32 ............................. ATCAGCGGGATGCTGACCAGCCGTCCGCGCTG 50257 29 100.0 32 ............................. TCCTGCCAGCTGATGAGGAGCCACCCCCGGCC 50196 29 100.0 32 ............................. CGCACCGGCTGCGCCGGCTCGCCGAGCAGGCC 50135 29 100.0 32 ............................. GCGGGCCAATGTCCCGAGTTCAGCCATACACG 50074 29 100.0 32 ............................. CAGAAATTACAAGAGGCTGGGGGTGGGCGAAA 50013 29 100.0 32 ............................. CAGCTCGGTCGGCTGGTCGCCGACGGGGTGCT 49952 29 100.0 32 ............................. GTGAGCGACCAGGCCCGTGACCAGGGACTTGC 49891 29 100.0 32 ............................. AAGAAGCGGCGGAGACCTTCCGTCGGGCTATC 49830 29 100.0 32 ............................. TCGCGCAAGGACACCCGACAGGCTATCCGGCT 49769 29 100.0 32 ............................. GCGACCTACGGGCAGCGGCTGCGCGAGTTGTC 49708 29 100.0 32 ............................. GATCAGAACCGGAACACGATGACGATCTTTCC 49647 29 100.0 32 ............................. ACCGGCCATGGACCGACGCCGACCAAGCCGAC 49586 29 100.0 32 ............................. CCCCCCAGACGGCCCCCAGCGCCCCGCTGGGG 49525 29 100.0 32 ............................. GACGGCCCGGCGCAGGCGGGCCAAACGGTGAC 49464 29 100.0 32 ............................. GCCATCAACAAGGCAGGCGGCTGGAAACTCGC 49403 29 100.0 32 ............................. GACCCGGCCGAGCGAAACGCGGCTGCGATCGA 49342 29 100.0 32 ............................. GTCGCAACGGTCCGCGCCCGGGTCGAGGTGGA 49281 29 100.0 32 ............................. GCCCCGCCCAACCCCAGAGGGGAGGGCGGGGC 49220 29 100.0 32 ............................. GTCCACCTGGCCACGGGCCCGCTCAAGGCCCG 49159 29 100.0 32 ............................. GCGTTCACCAGTTTCGCCCGGTCGGTGCCGGC 49098 29 100.0 32 ............................. GCGCTGGCCGACACCATCGCGCTCGACCTCGG 49037 29 96.6 32 ............................T TTCCCGGAGCCTGATCATGCCGTCAGCGTCTA 48976 29 100.0 32 ............................. CCGCCCGGCACGTCGAGGCGATCCGGGACGTG 48915 29 100.0 32 ............................. GCACGTCGGAGACCGCCGACGCGGCCTCCGAC 48854 29 100.0 32 ............................. CTGGAACGCGTAATCCCGGGCCTCGTTCCTGA 48793 29 86.2 0 ........................C.TTA | ========== ====== ====== ====== ============================= ====================================== ================== 53 29 99.5 32 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : ACGCTCGGATAGCCGTTGAGCCGCGCGAATCCATCCTCGTCCTGCTTCTGAAACCCCGCCGTGCACTTACCGATGTCATGCAACCCGGCCCAGTAGGCCAACAGGCCACGCGCCCGCCCTTCGTCCACGCCAAGCTCGGCGGCCACAACCCGCCGCAAGCCGGGGGAGATGTAGCCGTCCCACAGCGCCTCTGCCGCGGCGGCCGTGTCGAGTAGGTGGCAGATCAGCGGGTACCTGCTGCCCCGTAACCCTCGGGATTTGCCCCACAGCTCAAGATCAACATCTGGACTGTCGGCCATACCACCTGCCTCAGCTCAAGCCCAGCTACAGGCGACATGTACGTCATGTGATGGCCAATCACTCTAGACCCTGATGGCGACAATTTCATAGTTTTGCCAGACGTGTACAACGTTCACGATTATGTCAACATTCGCCGACCCAAGACCTGCTGCCCTCTCGAAAACTCGACAGCGCTCCGATAACATCGCAGGTCGCGAAGG # Right flank : CTTAGGCACGCTGGGTGTTATCGCGCTCTCCGCCCTGGGACGCTCGGCAGACCGGGCTAAGGCTTCTTGGCCACGCCGACCGCGAGCCAGTTGGAGGGTGGGGTTTCGTCCTCGTCGGGGCGCCAGTGGCCGCCGTCGACGAGGCCGGGGTCGATCAGTTCGAGGTCGCCGAAGAAGGAGCGGATGCGGTCGCGGGTGCGTAACGTCATCGACTCGCGGACGGGTTCGAAGGCCTGCTCGAAGCGGCGGGCGGCGATGGGGGGTGGGCCGTCGCTGGTCAGGTGGGAGATGACGAGGTAGCCGCCGGGGGCCATGGCGTCCCGGAAGCAGGCGACGACGCCGTCGGGGTCGTCCTCGTCGGGGATGTGGTGGAGGATGGCGATGAGGAGGATCGCGACCGGCTCGGCGAGGTCGATCAGGGCGGTCAGGTCGGGGTGGGCGAGGATCTCCTTGGGGCCGCGGGCGTCCGCGCGGATCGCCACGGTGTTCGGGACGCCGTC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.80,-11.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 60963-63349 **** Predicted by CRISPRDetect 2.4 *** >NZ_BMPV01000004.1 Thermopolyspora flexuosa strain JCM 3056 sequence004, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ============================================================================================================================================= ================== 60963 29 100.0 32 ............................. ACGGTGACGTCGAGGAAACGGCCAGCGTTTTC 61024 29 100.0 32 ............................. CCGGCCCATTCGATCTGTCCATCCCGGTCGAT 61085 29 100.0 32 ............................. CACTATGTTCCAGCATCACGGCTCTGACTGAC 61146 29 100.0 32 ............................. CCCAAGAAGGCCCAGCAGTACTCCCCTGAGGA 61207 29 100.0 32 ............................. GCCCGCGCGGCGCGGGCCGCGAGCAAGGGAGG 61268 29 100.0 32 ............................. TAGATGCGGACACGGTGGTCGGTGCCGCGGCA 61329 29 100.0 32 ............................. GCCGTGGGCCTGGCCGCCTCGTCGAGGCCTGC 61390 29 96.6 32 ............................T GCACTCTGGACCGCGCCGATCACTTGATTCGT 61451 29 100.0 32 ............................. GTAGCCAATCGCATCGGCGGAGAGACTACGTA 61512 29 100.0 32 ............................. GGTGACGCACCCACCCCCGAGAGCGTCACCCC 61573 29 100.0 32 ............................. CGCGTCATCGAGCTCGTGATCAAGGGTGACGC 61634 29 100.0 32 ............................. CCGTCCTCTTGTCGGCACCGGTGACCTGGCCG 61695 29 100.0 32 ............................. GTGGCGGCACCCTTAGGCGGGTAGAGGTTGAT 61756 29 100.0 32 ............................. TATGAGGGCGACCACAGATGGTTCCGGTGTGT 61817 29 100.0 32 ............................. CCGCGCACAACGCCGGCGCTCAACGTCCGGTA 61878 29 96.6 32 ............................T CGACCACATCCGCTACCTACAGCAGGTCGGCC 61939 29 100.0 32 ............................. GTGTTGTGCAGCACCTGGATCAGCGGCACACC 62000 29 100.0 32 ............................. GACCCGCTGGTCGCGACGCTGGCGGCGACGGA 62061 29 100.0 32 ............................. CGTCCGGTGCCCTTGCAGTTGCCGCACTTGAC 62122 29 100.0 32 ............................. CGGACGGCGTCCATCGTGCGATCCTTTCTGTA 62183 29 100.0 32 ............................. AGGACCTACCACTGCCCGAACCCCGACTGCCG 62244 29 96.6 32 ............................T TCAACGGGCAGCGCGTCAACACGCGCGTCATC 62305 29 100.0 32 ............................. CGTACGGAGCCGGGCTGCTCCTGATCCGGGAG 62366 29 100.0 32 ............................. ATGGAGCGGCGCAACACCGGCCCGGCACGGCT 62427 29 100.0 32 ............................. GCCGGCCTGCGCCCCACCGACGTCGTCGCCCA 62488 29 100.0 32 ............................. GCCCGGGACATCGGCCCCGGGCCTTCGTGCTG 62549 29 100.0 32 ............................. GTGGCTCATCGGAGAGACCTTTCTTGGTCAGG 62610 29 100.0 32 ............................. CCGCCCTCACCCGCCCAAACCCGAGAGAGAGG 62671 29 100.0 32 ............................. ACCAGGTGGGTGGCGTCGCCCACTCGGCTGAT 62732 29 100.0 32 ............................. CCTTCGCATGAGCTGAGCCAGCTCATCGTGAC 62793 29 100.0 32 ............................. TCGGTCAGACCGAGCAGCTCGCGGACGCGGGG 62854 29 100.0 32 ............................. CACATCGACGCCGTCGCGCAGGCCGCCCGGGA 62915 29 100.0 32 ............................. ACGCGCCCGAGCGCGGCCTGGAGGCCGCTACG 62976 29 100.0 27 ............................. TCGATTCCGCAGACCAGCGGTTTGCTG 63032 29 82.8 88 .GG.....A.TA................. GTGACGGTCACGGTCCCGTCCACTGCACTGATGTCCTCCCCAGGTGCGTGGGGGGCAATCAGCGGGTGTCCACTGCTCCGGCCGGGGC 63149 29 79.3 141 A.........T..GT..T........T.. CGGCGGCGTATGTGCTGGCAGGCCGTCCTGCCTCCCCACGTAAGTGGGTGGGCTGCGTTCTCAGTAGCCCTCGATAACGTGATTTCGTCATCAAGAACGTGGGCGGGCCGTCGTAGGGACGGACGGGACTAGGGTGCCGTC C [63153] 63320 29 82.8 0 ...GC..T.C..................A | C [63338] ========== ====== ====== ====== ============================= ============================================================================================================================================= ================== 37 29 98.2 36 GTCCTCCCCACGCACGTGGGGGTGAGCCG # Left flank : CCGAGAGTACTCCCGCAACGGCGGGCGACCGCAGCGTCGATGTGGTCCACCTCTGGGATCCGCATCTCGGCCCGCTTCCCGCCGGTGTGAACTATGGCGTTGATTCCTTTGACGCATACGACTCGTTCGACCTGCAGGTGGAGTGAGCGATGGCATCGATGGTCGTGATCTCCACTACGGCGGTCCCAGATCACGTAAACGGAGCGTTATCACGCTGGCTAATCGAGCCGTGTCCCGGGCTTTTCGTGGGCACGGTATCCGCCCGTGTGCGCGACGAACTCTGGTCGGCGGTCAGTGCGAGCGTGGGCGACGGCATGGCCGTCCTCATCCACCCGGCCGACAACGAGCAGGGTTTCGCGCTACGCACGTCGGGTCAACGTCGTCGACACGTAGTCGACTTCGACGGCCTCCAGTTGATCAAGTTCGCCGCCGAGACAACTGACACCTCATCTGATCAAGAAAAACCTCAAGTGAAAATGTGAAACCGCAGTTCAGGAAGT # Right flank : ATACGACGTTGTCGAGGTTCGGATTCGAGGCCTCGTTTTTCTCATTCCATGCGTGAGTTTTCGCCGGCGCCCGGCCCGGCTGACGTCGTCTTGCTCCGCGAGCTGCGCCGGCCGTGCCTGGGGATCGGGCCGCCGCCCGGCGCCCCGCGACGGCGCCGGGCGGCGGTGGGCGTCAGGGGCGCTTGGCCCGGTCGATGACCTCCTCGGCGGTGAGGGGGGACGGGGGGTGGTAGGTGAGGCACAGCGGGGTGCGGATCTTGACCATGGGGCGGCCCTCGGTCGCGACGTAGAACTCGCCGCCCTTGAGGCGGGCGATGTCGGAGACGGTGCCGCCTTTGGCGCGGGCCATCTCCTGGGCGGCGGTGATCTGCACCGGGGCGTTCAGCCGGCCGTAGAACTGGGTCGTGGCGTTGCCGGGGATCTGGTTGTGCAGGCCCTTCGGGGCCTGGGTGGCGAACACCAGGCCGAGGCCGTACTTGCGGGCCTGGGAGGCGAGGGCG # Questionable array : NO Score: 5.79 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.37, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCCCCACGCACGTGGGGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCACGCCCGTGGGGGTGAGCCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.50,-10.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-18] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //