Array 1 96750-94403 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMPL010000013.1 Escherichia coli strain 1001175B_160314_F3 NODE_13_length_156643_cov_38.1112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 96749 29 100.0 32 ............................. CCCGATAAAACGTTCAATCCCGAACATATCGG 96688 29 100.0 32 ............................. ACACACCAAAATATTCTGGTGTTTGTTAAGGG 96627 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 96566 29 100.0 32 ............................. GCGACGATACCTGTGCGAGCTGAATAAAATAA 96505 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 96444 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 96383 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 96322 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 96261 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 96200 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 96139 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 96078 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 96017 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 95956 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 95895 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 95834 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 95773 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 95712 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 95651 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 95590 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 95529 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 95468 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 95407 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 95346 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 95285 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 95224 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 95163 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 95102 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 95041 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 94980 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 94919 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 94858 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 94797 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 94736 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 94675 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 94614 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 94553 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 94492 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 94431 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 39 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [43.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 112829-112251 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADMPL010000013.1 Escherichia coli strain 1001175B_160314_F3 NODE_13_length_156643_cov_38.1112, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 112828 29 100.0 32 ............................. ACCGCAGAAAAAACCAGCTGGCCTCGAAAGAA 112767 29 100.0 32 ............................. ATCTGGCTCTTCAAAAAACAGCAGCCTGAACC 112706 29 96.6 32 ..........................T.. CCGCCATCACAGAACCTTGCCAGACCGTATCC 112645 29 100.0 32 ............................. CGCCCAGGATCAGCTTACTGCGCACCGTTTCC 112584 29 100.0 32 ............................. AAAAAACAGCAAAAGATGAACAAAATATAAAC 112523 29 100.0 32 ............................. CTCAAAATCGGCGGCGGTTAAGTGGCTGACAT 112462 29 100.0 32 ............................. GGTTAAACATGCCGTTAACGCCATTTCAGCGC 112401 29 100.0 32 ............................. GGTATTTATTGTGCAATTAGCTTTGCATTAAA 112340 29 96.6 32 ..........................A.. TTTAGCGTAAAGTCAACAATTACTTGGCTTTT 112279 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 10 29 99.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTATTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGTACTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATATGTTATGTTTAGA # Right flank : CCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACCCCTCATGTTCAAAATAGTTCTCCATGCCAGAGAAGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATGTTGAATTAATATCTATTAATTTTTTCTTTAGGTTAATAGTTTGTTTTTTAAGCTTGTTATTCATTGATTAAGTAATAAATCTGAAAATTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATTACCGTTTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-76.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //