Array 1 523356-522342 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWQ010000001.1 Listeria booriae strain FSL L7-0587 NODE_1_length_892289_cov_64.424363, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 523355 30 100.0 35 .............................. AGGTTTCGCATGTCACCACGGTCAGGGGTCGCCGT 523290 30 100.0 36 .............................. CCGCTTGATAATCTCGCTAGGTATGAAGATGTGAAT 523224 30 100.0 35 .............................. TCCATATCAGATAATTGACTCTCATACGGAAAACT 523159 30 100.0 36 .............................. ATTTGCTGTATGGATGATGGTTGATTATCTAGGTCT 523093 30 100.0 37 .............................. CAAGAAAACGCCGTTGAAAAAGAGGTGGAGCAGAAGG 523026 30 100.0 35 .............................. TCAACAGCGGAGTTATATATAGTAGCCCAGTTTAC 522961 30 100.0 35 .............................. ATTACTATCTCTCTTTTTTAAAAACTGGTCGATAG 522896 30 100.0 35 .............................. CCCATTTGGTATCTTAGTAAATTTTTTTGCTTCTG 522831 30 100.0 36 .............................. TTGTTCATTATTATCATATTCCCATTTATGCCTAGC 522765 30 100.0 36 .............................. CACTTATTTTCTAATTCTTTTAGAATTCCATCCATC 522699 30 100.0 36 .............................. TGCGATCGTCCATCCCCAATATTGTTTTTTGATATA 522633 30 100.0 34 .............................. TTACTTTTTGACCTTCAACGAGGTAAAGCTCTAC 522569 30 100.0 36 .............................. CATTAAAGATGAAAAAGCAATAGTTTTAAGATAAAA 522503 30 100.0 37 .............................. TACGGCGATTATAATGCTGATACGCTTCTTGCCTTAT 522436 30 100.0 35 .............................. TGGTTTGGAATTCCACCATCTTTTATGAATGCCGT 522371 30 96.7 0 .................A............ | ========== ====== ====== ====== ============================== ===================================== ================== 16 30 99.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : GAAGGCAAATGGGCTGGTATGTGTGGCGAAATGGCCGGCGATCAAACAGCTGTACCATTGTTGCTAGGAATGGGTCTAGATGAGTTCTCTATGAGCGCATCAAGCATTCTAAAATCACGTTCATTAATCAAACGCCTAGATCGCACAGAAATGGCGAAACTAGCGGACGAAGCACTACAACAAGCTACAGAAGAAGAAGTTGTAGCGTTAGTTAATAAATATACAGCGGAGTAATTTCGTTGTTCGGAAGGCCCGAGGATTTTCCTCGGGTTTTTCTTTGTGGGGAAAGAGGGGATAAAATCCTAAAAATCTGTCGACCGTCGGTAGTGTAGAAATTAGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGACTAGATTTGAGACCGTTTTTGGAGGTTGGGTTGTAAGGTTTGGGAGCGGAAATTTAGGGTTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGAGCACCT # Right flank : AATAACAACCGAATTTTTGAGGACTAAACCGTGATAGTCTTTATCTAAATAATATGAATCCAGACTAGATTGCTCACAGAAGCAGTGTTTCTATCCATTTTTTACAGAAGCAATTATCATTCAACAATCTCCAACCAACTCCATTTGCATTTTTACTCCCCCAGATGTACACTTTGTTTAGAAACGAACTGTATAGAAGGAGGAGTTTTTGCGATGAAGAAAATTGGATTTATTGGTGTTGGGGTTATGGGCGCTAGTATGGTGCGGAATTTGATGGCGGCGGGGTTTGAGGTACATATTTATACGCGGACGAAAAGTAAGGCGGAAAGCGTGATTCAAGAGGGGGCAATCTGGCATGAGACACCGCAGGATTTGGCGCCTCAGGTCGATGTGCTTATCACGATGGTTGGATATCCGACCGATGTGGAGGAGCTTTACTTGGCGGAGGACGGGCTGTTGACTACGCTTCGTTCGGGAGCTATTGCTATTGATATGACGAC # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 46319-44712 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWQ010000008.1 Listeria booriae strain FSL L7-0587 NODE_8_length_118951_cov_59.092863, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 46318 30 100.0 34 .............................. CTAAAAATTTCAACTTTACCAACAATTTTGTAAT 46254 30 100.0 36 .............................. AATTTTGGTAACTCTTAGACCTTCTTCTCTATCCAC 46188 30 100.0 34 .............................. TCTTCTGACCTTCCACTAATCCCTTATGCACGGC 46124 30 100.0 36 .............................. CAACGTCCTTATCCGCCCACGAAGGCTTAGCATAGA 46058 30 100.0 36 .............................. AGCTCCTTGTATAGCGCTGAAAACGCCCGTTATCGT 45992 30 100.0 36 .............................. CTACCTCAATGCCTGCTTTTAAATCGACTAGAAGTG 45926 30 100.0 35 .............................. TTGATAATTCTGGATAATTGACCTGGATGAATTTT 45861 30 100.0 36 .............................. TCCGATGGGTACAATCGACCCCATAAACTAGACTGT 45795 30 100.0 36 .............................. TTCGCTAATGCTGCGAGACCCGTGACAGAGGCTGAG 45729 30 100.0 36 .............................. TGGGTCGAGGAAGTAATAGAAGAACTGGTTTCATTC 45663 30 100.0 37 .............................. CGGTTCTGTTTTTGTAGGATCAACACCAGATACTCGC 45596 30 100.0 36 .............................. CCTTCATCGTCATAATAGGCTGTTTGGTCAACCTCT 45530 30 100.0 35 .............................. TCACTAACACCTTATATGCAATCTGAATCTTCTCT 45465 30 100.0 36 .............................. AATTGTACTTGCGCCAGTTGGCCGGACAATACAACC 45399 30 100.0 37 .............................. GGGATTTGGTAGGAACATATGGCTCCTTGTTTAATGG 45332 30 100.0 35 .............................. AATGGAGAAAGGCAATTGATCTTCGATGAAACGGC 45267 30 100.0 35 .............................. TCACCTTCGGCTAGTTCGCCAATTTGATTAGTCTT 45202 30 100.0 36 .............................. TAACTGTCATACAGCCCATCAATCGTTGTTCGAATC 45136 30 100.0 34 .............................. TTCTCCGGAAACAGGTCGACGGGTTGGGTATTCC 45072 30 100.0 34 .............................. TCGGATAGAACGTTTCGACAACACCACTACTATT 45008 30 100.0 37 .............................. ACCCAACTAACCGAAGAACACGGCAAGAAGCTGTACA 44941 30 96.7 35 .............C................ TGGACTGAGACGCGAGCGCGCCAAATCCATTTATT 44876 30 96.7 36 ........T..................... GTAAGCGAGGCATACTTTTCAGAGTTGCAAAACAGT 44810 30 100.0 37 .............................. ACGTCTGGCTCTGTTAAATTGAATGCCAACACATCGG 44743 30 76.7 0 ............C..GG..T...G....TA | C,A [44716,44724] ========== ====== ====== ====== ============================== ===================================== ================== 25 30 98.8 36 GTTTTTATCTAAGTAATGTGAAATGTAAAT # Left flank : AATGTTCCACCTCGACGAAGCCAACTGGAAACTGCATAAAAAAGACATCATCAGCAATACGAAAACCTGGGAACCATTCCAAAAAGAAGCATTACAACATGAAATGAGCAATTTTGAAGTGCTAGATAAAGAACGCCTCGTTCAGAAAACAACATTTGGCGCGAATCTACAAGTCATAGCGAATTTCTCGAACAAGAATTTTGAGTACGAAAAGCAAATAATTCCTGCGAATAGCGCATTGATTGTGCAAGACGGGAAGAAAAAGATAATTTCTACAGATAATCTTGATTCGTAATAACAGGAAGAAAATCTGTCGACCTCCAGTAGTGCAAAATAATGGGGACATCGACAGATTTTTGTTATGTATTGGTACTAAAGAGGTTAGGCCTATTTTCGGAGTTTGGGTTGTAAGATTTGAGGGCGATAATTTAGCATTTTTTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAAGCGTTGATGGGGTACCT # Right flank : ATGCAAAGTGAATAACAAGAGGGTGAATATCCATTACTACTAAACAATGGATATCCACCCTCTTATCTATGCCTCATATGTTGAACATTTTTAGCATGCAATTAACAACAATTATCTACTCAAACTAACTACTTTAGTATCAAGCACGTTACCATTGATATCGTAAGCAGTGATGTGCGCGCTATCTGTCGTGTTAAGGATGACCGTTTTTGCATAATATTTAATAGCTGGTGCAGTAACAGGAATTTTAACGCCCTCTACACCATTCACAGTAAGGCTAATTTTCGCTACGTCTCCAGAGAATTGACCAGTAACATAGCCTTCTTTACCAATTACAAATGGAGCGAGCGTGGTGATAGAACCGGTTCCTGCTATCTGATTGGAAAGGGGAACCGTTTTTGTATCCAGTATTCTACCATTGGTATCATATGCAGTTAGTGTGATAGTGTCCGTATTTTTTAAAATCACTCGTTTCGCATAGTACTTGAAATCTGGTGGAG # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 2 50124-49566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWQ010000008.1 Listeria booriae strain FSL L7-0587 NODE_8_length_118951_cov_59.092863, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 50123 30 100.0 36 .............................. CCCCTGCTGTATTTATCGCGTATGCGTCTCTTAATT 50057 30 100.0 38 .............................. ACTTGCAAATTCGCATGAAGGTCTCTAGCGTTAACAAA 49989 30 100.0 37 .............................. TGGTATAGTGCAACCCGTGCAGTCGTATCCCCACGCA 49922 30 100.0 35 .............................. GATTATATCAAGGATCAATTAATAGATGCCTTAGA 49857 30 100.0 36 .............................. AGCATTTCACGAGCGTCATCTGGAACTGCAATCATG 49791 30 100.0 35 .............................. TCGCATATGATACTAAAACTTGAATTAAGCCAGAA 49726 30 100.0 35 .............................. GGCGATATGAAGTTCCCGATGATCCACGAATAATC 49661 30 100.0 36 .............................. AAAAGATGCTCAAAACGCGCAAAAAGAATATGCCGA 49595 30 86.7 0 .......................CA...TC | ========== ====== ====== ====== ============================== ====================================== ================== 9 30 98.5 36 GTTTTTATCTAAGTAATGTGTAATGTAAAT # Left flank : GACGCTGAGCGCAACATCAGACCAGTACCGAATTCCGAGAAAATTTGGGACGCGGATATCGTTCTAATCGCCGTCGGATTCGCAGGCACAACCAAATCAGTATTCGAAGACTTTCAAGTAGCAAAAACAAACCGTCACACAATCGATGCTAGAAAAGGTTTTTACCGTACCAACGTAGAAGGCGTCTTCGCATGTGGCGACGCAAGATACGGCCAAAGCCTTGTTGTAACAGCGATTAACGAAGGAAGAGAAGCAGCCCGCGAAGTAGACTTCTATTTGATGGGCGAAACATTCTTACCATGATAAAAAATCTGTCGACCTCCAGTAGCGTAAAAACTAGGGGACATCGACAGATTTTGTTTTTGCTTAGGGGGAGAAAGGGGTAGGATGATTTTCGAGGAGGCGAAAAAAATAAGTAGATCCAAAAAAGACAAATTTCTTGGAGGTCGACAGATTTGGGGTGTTGAGGTATGATGGGAGTAAGAGTTGAGAGGGTACCT # Right flank : CCCAAATAAGGAGAGATACCAAATGACTATGGAAAAATTAATACTACAAGTCACCATAGATAGACCTATCGGATTTAAGGACGACTACGGAAATACATACCCAATAAACTACGGATTCGTTCCCGGTGTCATAGCCGGAGATGGCGAAGAACAAGATGTTTACATAATTTCTAAAAATGCAACAACTCCACTCGACGCATTTGAAGGAATACTCGTCGCGGTCATACACCGGAAAAATGATACCGAAGACAAGTGGGTAGTTACCTCAAAAAATGAATTATTATCCAAACAAGAGATATCCGAAAAAACGCATTTTCTAGAGCAATACTTTGATTCCGTTATCGAGATTCTTTAACAAATACAACGTTATAAACGCTCATCTTCTCCTGAAATACCGAAATAAAAGATGAATCACTATTAAAAACAGTACACTAACCATGAAAAAACCACTCGATACCCAGTCCATAAAAAAGGATACAAATACTAAAATTACGAGAACG # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATGTGTAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 20856-20557 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWQ010000004.1 Listeria booriae strain FSL L7-0587 NODE_4_length_416243_cov_68.568477, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 20855 36 100.0 29 .................................... GGTACCAGCAAATTCTAGTAGAAGATGCT 20790 36 100.0 30 .................................... ATTTGAGTGTGATTTTGATTTTCTATTCGT 20724 36 100.0 30 .................................... GAATGATTGCTAAAACGCACAGTAACATGA 20658 36 100.0 30 .................................... AAAGAAAAGCCAGGACAAACTTACGACGGT 20592 36 86.1 0 ..........................GT.T...TA. | ========== ====== ====== ====== ==================================== ============================== ================== 5 36 97.2 30 GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Left flank : ATTGTACAGCTATCCCCATATCAAATATCTCCGAAAAATCATCAACACTCGGCAGTTTCTTTGTACTAATAATTTCTTCACCTTGAAGTGTTATAGGTAACGCCTTGCTACCATCTTTCTTCAATAAACGAATAACCTCGTCATTTTTGAGAAACGGTTCTAGTGAGTCTTCCAAGTAAAAAGCATCAAGAACTATTTGCTCCTCCTTTACGAAGAGATAACTTTCTTGGAACTCCTTGTCAAAAATAGAATTGAATAGCTCTAGCTCTACTTCATCAGACTGTTTTAGACTGTCTCGTGAGTCGAGGAAGAAAGTAAGTTTTATCATTTTTGCACTCCTAACTGCTTTCGAAACTAAAATAGGATACATCATTGTTTTGCAAGTAAATACTGCATCATTGACTACCGATTGGATGAGCATCACTTTGAATGCTCTATTTTCTATGGCTACTAGTCTCCGATTAATTAGAAATAACTTATCCCACTTATCCACAGTAGAG # Right flank : TTTAATCTTTGTAATTCTTTTATTAATAATTGAAATACCCTACGTCACATCTCCAATAGCGCCTTCACAATACTACAATACTCTTCTGAAACTTGATTCGTTTCAATATAACTATCATTTAATTTTTTCCCACTTAAATGTCTCAATTTTTTTGGTTTTAGGCTTGCTATTACCAATCTGTGTTTATTGTTTTTCAAGTTAGCAAACACAACACACATACCATGCTTATCTAAAAGATCGATTAATGATTTAGTAACTGCGTTCTTTAATTTGCGATCATATTTAAGCATTTCTCTTAATTTCTCGAATAAATACAATAACGAATATTTATGTTTTGGTGATAAATAATTTAAATGTGCTATATAGTTCCTTCCATTTTTCTCAGAAACAAATACCCCTGCCTTGTTCATGAAAATATCCAGCTTTTCAATATAATCTGGCCTGTTTTTTTTGGTAGTATTAATCCAGCTATCCACTCTTTCGGTATGTCCAGAACTCTT # Questionable array : NO Score: 2.92 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTCCTCTTCTGTTTTGAGGTACTCTAAATC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.00,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA // Array 2 149139-151182 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAARWQ010000004.1 Listeria booriae strain FSL L7-0587 NODE_4_length_416243_cov_68.568477, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 149139 30 100.0 36 .............................. TGAGTAAGCGCCAGTTTCTGCATCCGACCAGACAAT 149205 30 100.0 34 .............................. AATGATATGGTAGAGCGCTTCAAACTGCCTATGC 149269 30 100.0 36 .............................. AGCGTTCAATATCAATTGTAGTTTGTGAGCATTTAA 149335 30 100.0 34 .............................. AATGCTATTCAGTCTCATCATGTTTCACTTTGAC 149399 30 100.0 37 .............................. CCATTCGACATCGACGCGTGGACGTTTAACTCGTACA 149466 30 100.0 35 .............................. GAATTATTATCTTTTACGTACACACAATGACAATC 149531 30 100.0 34 .............................. AAATCAATTAGTTCTTTTTCTGATTTTTCTGGTA 149595 30 100.0 36 .............................. ATCATCTATAATGTTGTTAATGACTGTTTTAAATTC 149661 30 100.0 37 .............................. CGGGCTCTTAGGTAACTTTTCCGGCAAGTTAAGTCGC 149728 30 100.0 34 .............................. ACAATTACCTAAGAAAAAGGCAAATGGTTTTCTA 149792 30 100.0 35 .............................. TTCAGAAATATAGTCACCGTCGTTGATAGTACCAG 149857 30 100.0 36 .............................. ACATTTCCAAGTACTTTGCCTTCTTAAGTGACCACG 149923 30 100.0 35 .............................. ATCGAATTGATTAGGGGTTTGATGATGTGAAATAT 149988 30 100.0 37 .............................. GATCGCTTGAGTTGGAAGTGTTGCGTGAGCTGTTTAC 150055 30 100.0 35 .............................. GCCATTATCTTGCTTCCAGAACCGTTTGGCTCAAA 150120 30 100.0 34 .............................. GCTCTAGCTACGCGTAATTTATTATTTTGTGTTC 150184 30 100.0 34 .............................. ATAGTACACATTTCTAAGAATTTTTTCTGAATTC 150248 30 100.0 37 .............................. TCATTCGAATCATTACCTTTTGTAGCATCTACATAGA 150315 30 100.0 36 .............................. GTATTTTGCCATGCTAATATTCCATCATCGTTTTTT 150381 30 100.0 36 .............................. TACACATCTTTATCATTCCAAGAAGCTTTTGAATAA 150447 30 100.0 35 .............................. AGGAACAATGGGTGGTGGATTAGATATTTACGATA 150512 30 100.0 34 .............................. CCAGGAGCACTTGCAGAATATGCAGACGGCGTTG 150576 30 100.0 36 .............................. ATTTGCTGGATGGATGATGGTTGATTATCTAGGTCT 150642 30 100.0 36 .............................. CAACACCTGCCTTCAAATCTACTAGGAGGGCTTTTT 150708 30 100.0 36 .............................. CGCATCTGCTAAAACAAGTCCTTTCCACAAGCCCAA 150774 30 100.0 28 .............................. TATTAAGATATTAAGATATTAAGATATT 150832 30 100.0 35 .............................. TAGCAATTCGTATTTTTCCCAAGCGTCATTTCTAA 150897 30 100.0 34 .............................. GTTTATTTATGAGTAGGTGATTGCTATGGATATT 150961 30 100.0 37 .............................. ATGGGAACGACTATTATTCATGGCTATGTAAATGGTG 151028 30 93.3 37 T................G............ AAAATAGGATGACGGTAGATCAAGGCCAAATGGTAGA 151095 30 93.3 28 .................G......A..... TAGGAAAAGGGCGCACTTATACACCCTG 151153 30 70.0 0 C.....CC.G.....C.......CA...CA | ========== ====== ====== ====== ============================== ===================================== ================== 32 30 98.6 35 GTTTTTATCTAAGTAATATGAAATGTAAAT # Left flank : AAGATTTGGTGGTGAGATATGTATATTATCTTAATTTACGACATAGCAATGGATAACGGCGGTCCGAAAGTATCGAGAAACATTTTCAAAATCTGCAAAAAATATTTAACCCACGTGCAAAAATCGGTATTCGAAGGCGAAATCACACCAGCACTACTTGTCAAATTGCGAATGGAGTTAGACCAGTATATTCGTGACGAAGAAGATTCCGTCATTGTGTTTTCTAGCAGAAATGAAAGATGGCTGGAAAAGGAGTTTTGGGGCGTTGCGGATGAGAAAACATCGAATTTCTTTTAGTATGTAGAAAAATCTGTCGACCCCCAGTAGTGCAAAATAATGGGGGCATCGACAGATTTTTGTTAAGCGTTGGTGTGATTGGGTTTAAGGCTGTTTTTGATGTTCGGCTTGTAAGGTTAGAGAGCGGGAATTTAGGATTTGGTTGTCGGTCGACAGATTTGGGTGTTTGAGGTATGATGGGAGTAGGCGTTGATGGGGTACCT # Right flank : ACGGTCTGTTTAGCTACGATTGCTTTGGCAGACAATCTCAGTCTACCAAGCAATGTTCGCAGCAGTATACTCTACTTTCCAGTCCTCACAAAAAATCCTCGCGATAATCATTAACATACTGATCAAACGAAGTAGCCTCACGGTGCAACAATTCCTGTGCTGTTGGGGTTATTTGTTTTGCGTTTCCCATTTGGGTTATGAAGTAAAGCATGGTCATGACGTTGGCGAATGCTCTTGGGGTTCCTCGTTTTATTATGGTTGCGCGAAATCGTAATAAGGACGGCTTGCTGTATGTTATTTTTCTCCCTAGAATGGCTGTCATCTTCTCGGCCACCTCATAATACGTCAATGCTTCTTTTCCGGTAATACTGTACTTTTGTCCGATATGTTGGGGTGTATTCATCAGGCAAATAGCAGCAATCTCCCCAATATCACGCGTATCAATAAAGCTCGTCCGCGCATTGCCCGCAGGAATGAATAAATCATCATGTTTCTGAATA # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATCTAAGTAATATGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:83.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [48.3-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA //