Array 1 1562-671 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRJ01000112.1 Staphylococcus microti strain DSM 22147 c7e22946-4813-4895-9c02-81160a8d6eef_c116, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 1561 33 100.0 33 ................................. TACCAAGTAGCGTTGATTCATGCAATGCATAGA 1495 33 100.0 33 ................................. TACTTTTTTATTGTTCCACCACGTAGCTTTTGA 1429 33 100.0 33 ................................. TACCGTCACAAAAGCGGATTGATTCATTGGCAT 1363 33 100.0 33 ................................. TACCTTCATGCTCTACCTCAACTTCTTTGGCAT 1297 33 100.0 33 ................................. TACTAACAGAACAGCAACAACATGATGTTTTTG 1231 33 100.0 33 ................................. TACACCAGAAGAACCAAGTAAACCAGGTAAACC 1165 33 100.0 33 ................................. TACCGAATACAGCCCTTAATGCTTCTCTCACTT 1099 33 100.0 33 ................................. TACTGGCAGCGGTAGCTACTACAGTGGATGCAA 1033 33 100.0 33 ................................. TACAATTTGTGAGAAATATGTAATCCAAAATGT 967 33 100.0 33 ................................. TACTTATCAGTCCACACTTCACTAAATTTAACA 901 33 100.0 33 ................................. TACAAATCGTTTATCATAGCTTTTTTAGGTTGT 835 33 100.0 33 ................................. TACCAATAAAGAAGAAAAGGATGACCCGACAAC 769 33 100.0 33 ................................. TACAAGCAAACCTTTAACAATGTAATTTAGTTC 703 33 90.9 0 ...........................AG...G | ========== ====== ====== ====== ================================= ================================= ================== 14 33 99.4 33 GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Left flank : TCGTTTTGTGACGCAATTACAATATAAGGCTGATTGGTACGGACGGAAAATCATTAAGGTAGACAAATGGTTTCCATCTAGTCAAATCTGTTCAAAATGTGGGCACAAAGACGGCAAGAAATCTCTTGAAATCCGAGAATGGACTTGTCCTGTTTGTCGTACACATCATGATCGAGATATCAATGCCAGTATAAATATATTGACGGAAGGTCTAAGAATAATGGCATTAGCTTAAGTAGCATAAAGAACCGTAGGAACTACGGGGATAGCTTGGTAAATAAGAGACACCGCTGTTAGTAAAGCAATAAACTAGCAAGTACGCTCTATTCCCAAGAAGCTCCCACTTCAAGCGTTAAAAACTTTAGGTTTAGCTAAGTGGTGAGTAGTTCACAACCAACTAAAGAAGTCGAAATGGCAAAATACTATTTAATGTTTCAATCGCAAATGTTCAATATTGTTAGATGAAAATCAAAAAAACTTAAGGTATAATGTTGCTAGAG # Right flank : CACCAACTTCATTGTTGTAGATGTGTTTGAATGGCTAATGAGAGTGTATATTAAAAAATGTAATCATACGATTTGTGATGTGAAAATATAGATTAAGTCAAAATCTTACGAAGTTACAATACATAATCATAGACTCAATTGATGTAAATTTACATTTAATTTGGAGTGGTAAAGAAATTTATTGGTTGTAGTGTGAATAGGGTTTGTTCAGTAACATAAGTTATAAAGACCTAATTATAAAAGTGAAAGTTCTTTATATCAAGTGAGGAACCTATTTTACACCACCCAAAGAAAAAGTGGAATAAAATGTATGTAAAATATTTAGACAAGAAAATAAAAATTGTTGACATTGACAATCAGATATTTATTGGAGTGCTTGAAGATATTCAGAGAGATTATGATGCAGAAGAGTATACTGAAGAGCTAAGTGTCTTATTAGACAATGGTGTGCTTCTTGGTATTACATCTAATGAAATTAAATCAGTCAAAGTAATTTAATC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [0.00,-3.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 10237-9274 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRJ01000135.1 Staphylococcus microti strain DSM 22147 c7e22946-4813-4895-9c02-81160a8d6eef_c142, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 10236 36 100.0 36 .................................... AAATTTTGTCAAAGAAATGGAAAAGGAAATTCTAAA 10164 36 100.0 38 .................................... CATTTCTTCTAAAAAGATATTTTTAAGTCATGGCCTAG 10090 36 100.0 32 .................................... TCCTATACTTTAAACTTAAAAACAAAACTGTA 10022 36 100.0 34 .................................... AATAATATGAATAACATTATAGATAGTATTTTAG 9952 36 100.0 34 .................................... TGTAAAAAGAATGTTTCTGTTGAATTTAGTAAAT 9882 36 100.0 36 .................................... ACGTTTGTTTTTTAATTGCTTTTGATATTCTTTATT 9810 36 100.0 36 .................................... TATCTTATGAAATTATTTATTCAATAGCTTTATATG 9738 36 100.0 36 .................................... CGATTTTTCCGCCGTCTTTATAAATGAACCAAACAT 9666 36 100.0 35 .................................... TTTAAGTTGGTTGTTTTTCATTCAAAAACTTGTTG 9595 36 94.4 34 ...........C..........A............. TCATAATTAATGAAATCGAGTGGATTTATTACAT 9525 36 100.0 38 .................................... TCTGATAAATTCAAGAAATGCTGTTTTTGGATCTTGTT 9451 36 100.0 36 .................................... TAATTAGATGGTTTAATATAATCTAAAGAAAGCCAC 9379 36 94.4 34 ...........C..........A............. CCGAATCCCATTAATAAAAAGTTGTCTAGTCGAT 9309 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 14 36 99.2 35 AATAGAGAAGAACCCCATCAAATAGGGGACGAGAAC # Left flank : ATGATGCTCCTCTCTATATATAAGCATTTAATAGAATATGGTAGTTTATAATGAAATTATACAACTAAATCACTAAATATGTTAATCATCAAAAATTTTTAGTGTTTATATTAATAGAGAAGTGGTTGAATCTAGACGAATTACATCAGTGAATCTGTGGATTTATGGGTATTTATAGCTAGGGTCTTAAAATATTTGAGAAAGTTATGAGTCAATGGACATAGGCAGAACAGTTCGAATGACATATAGAAGGATTCTATTATTTTCATTAATTATCAGTTATAATACTAGAGATAATAAGTTTTAGTGATTTCTTTATATTTAAAGTGAATTAACGAGAAATCACTCTATTATTTGCCCATATTCAAGACAAATAGTAGAATAACTGAGAGCAATTGGCCGTTAATTAAGACAATGAATAATGGCCTGAAGCATTGAAACTATAGGATTAGTAGTATTATC # Right flank : TCGAACATTGGTTCCATCGAGTCGCCATTGACTTGTAAATAGAGAAGGGGCTGGGACATAAGGAAAATCATCCTAAATAATTAGGGAAAAAGCACTAATTGGCAGTAGGTGTCTGAAGTGAAAATATGTTTAAAAAACTTTTTATACTTCTAGTCACCCTTGCTGGGGCGAGACGACGAAAGCTTTTTGTAACAATAAGCTTTCTGTCCCGCTCCCTAAGACATCTTTAAACCTTCTAATACCATGTTTTGTATTGAATCAGATGATACAGAGAGGAAAATGTTAACAGTGATTAAAAAACGCTTCCAAAAAGTTTGGATATTTTATAAAATAAAGGGGTAGATTGCTTTAATAGGGTGAATGGAGGAAATGAATGAAAGATATTCTTTACGTTGAGCATCCATATTTTGTTACTGCTAAAGAGGATAGTGTGAAATTTAAAAATATAAGAGATAAGTCTCTTAAATATTTTTTGTTCAGTGAAATAGAAGCAATAATAT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATAGAGAAGAACCCCATCAAATAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-7.20,-7.00] Score: 0/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.68 Confidence: HIGH] # Array family : NA // Array 1 97-1157 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPRJ01000019.1 Staphylococcus microti strain DSM 22147 c7e22946-4813-4895-9c02-81160a8d6eef_c20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================================================================================================================== ================== 97 33 84.8 138 .............A.............TTG.A. AAATAAGGTAGGAAAACGGCAATTAAAGTTGTTGTTTCCTACCTTGTATTTTTTATCAATCATATGCTGTTTTATCTCCATTTAGATCAGTTTATACTGATGCTTTATTTAATGACTTAAGTTATAATTGTTCTAGAG 268 33 100.0 33 ................................. TACGTACAAATGAGACAGTTTACGCTTATAAAT 334 33 100.0 33 ................................. TACTTCAATGTTGGTTTATCTGGAACACTCGCT 400 33 100.0 33 ................................. TACTATTTATGTTCTTATACTGATATCAAAATT 466 33 100.0 33 ................................. TACATCCGACCGACAAAACCAAAGACTAACGAC 532 33 100.0 33 ................................. TACTTGAATAACCCGATGGGTCATCATCAGCTT 598 33 100.0 33 ................................. TACCCATTTAACTGTCGTATCAAACGTGTTTGG 664 33 100.0 32 ................................. TACTGATAATCGTGGTGGTAATTTTAAATATA 729 33 100.0 33 ................................. TACTCATGTTTTTAGGGTCGTTTGCTGCACCAA 795 33 100.0 33 ................................. TACATCGTTGGAGAATCATCCATTTAAACGAGT 861 33 100.0 33 ................................. TACTGAAGCCCCCAATAAAAGAGTGGGAGCGTC 927 33 100.0 33 ................................. TACATTTTTAGTATTTTAATTGGTCGCATGAGT 993 33 100.0 33 ................................. TACTTATTTTCATAGGAATCTATGACATAAATA 1059 33 97.0 33 .....................T........... TACGAACTACTTGAAATGTATTATGAGTGGGCG 1125 33 90.9 0 .....................T.....A..C.. | ========== ====== ====== ====== ================================= ========================================================================================================================================== ================== 15 33 98.2 40 GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Left flank : GCTTTATTCTATAAATTTCGTATGTGCATTAATTGAACTTATGTTATATACTGAGACTCATAGTCTGATAAACACCATTGATTATCAGGTATAAGTG # Right flank : ATACTCAAAGTCCGTCGATAACCAACCATCCAATTCAAACACTATATAACCCAACGAACCCCCACCTAACACTAACTCGTCAGATGGGGGTTCGTTTTCTCTATTTACAATGTAATAAGTCCTTCTTTAATCATTTCTTCAACGGCACGTGTGACGGCAAGTTTGACATGTTCGTATGTGAGACCACCTTGAACGTATACTTCATATGGTTCACGTATTGGGCCGTCTGCTGATAATTCAATAGATGCCCCTTGAACAAAGGTACCTGCTGCCATAATAACGTCATCTTCATAACCTGGCATATAGCTTGGTTCTGGGCTGAAGTGTGCGTTAATTGGCGATGCATGTTGAACGCTTTGACAGAATTTGATCATCTGCTCTGCATTTTCAAATGATACGGTTTGAATCAAGTCTGTACGTGGCGTATCAAAACTTGGTGTTGTTTGCATGTTACAACGTACGAGTAATAAGCTTGTGAACAATGCGCCTTTTAAACTTTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATGAATGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATGAGGTA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.10,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //