Array 1 1692-1944 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRK010000023.1 Leptolyngbya sp. FACHB-161 contig23, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ==================================== ================== 1692 37 100.0 36 ..................................... TCGAGAATGAGTTGGGGAAACCCCACCAATGCTCGT 1765 37 100.0 34 ..................................... TTGGGATGATCAGCAGCTCAATCAGTACGCCGAT 1836 37 100.0 35 ..................................... AAAAGATGATGCTTGTTGTGCCAGCTGATCGGATT 1908 37 91.9 0 A....A.................G............. | ========== ====== ====== ====== ===================================== ==================================== ================== 4 37 98.0 35 GTTGCGATCAGCCTCCCACGAATAGGTGGGCTGAAAG # Left flank : TGAACTGTGAAAAATGAGGGTCAGTTTGGTCGTTGTGAGACGACTGTGCTTTCCGACCCTGGTAGCTGCCCGCTCGCTGACTGCCATCCTGGTACAGGTTTCGATTTGAGATTTGTGTGGGGATGGGAAGCTGTAGTTGTGGAGCCCGTTCTTCAACTATAGCGCAGGTGCGCGCCCAGCAGAAGTGAGTCAAGCCTCCACCTCGTGAAGGCACAGGGGCATTATCTCATCAATTACTTGGTGCTGATAGTGTGACTGAAGTTGCAGCTACTGAATCGCCTCCGAGCAAGGAGGAGTCCTCCAATTCTTTTTGGCAAACCGCAGCGAGGGCAAAATCCCCGGGAGGTTCGCCAAACCGCTAGGAGCCACTACTAGTGAACCTTTCATCCAGTTGAGGTATGTCGAAGTAAGTTTTCCAGAAAGTTGAAAGAGTACTTTTTAGCGAGGTTTGCCAAAAGGCAGCTTGGAAAGCTTACAGGAGAAGAATTCTAGCGCTGGGA # Right flank : GCTCAGAGCAGAAAGTATAAATACTATGAGCTCAATGTGATTGTTGAAACATCAAATTCAATTAGCCTCAGCAAGAGGTAGCAAGTTGAATTTATAAACTACTTAACTACTAGCAACTTAATAAATCCAAACCAAAAGAGCTAACACACTAATATTTTCTATTGGAGGACTGAAAGGTGCATTCGATTCGTAATTGGTCAGCATTCTTTCTTGATTTCAAGTGACATAAATCTGCAAGTCGCATTATTGAAACAAATAGCGACATTAATCTGCGAAGAGCAGGGATTTACTAATTTGCGACACTAATTTGCGAAATGATATCCATATTGCCAAAAATCATCAAAAACGACATTAATTTGCGAATTGCGACATTTAATGTGCGAACGTACATAAAAAGCCGATGATGGGATTTGAACCCATGACCTTTCGATTACGAATCGAATGCACTACCACTGTGCTACATCGGCAAAAGGCCTCATGCAGTATAACAGATAATCGTT # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCGATCAGCCTCCCACGAATAGGTGGGCTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.60,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.64 Confidence: LOW] # Array family : NA // Array 1 162131-161573 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRK010000005.1 Leptolyngbya sp. FACHB-161 contig5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =========================================== ================== 162130 37 100.0 36 ..................................... ATTCGGAAACTCCCTGCACAACTCGGCAAATGCCCG 162057 37 100.0 37 ..................................... TCCCCTTAACTAGGCATGATATGCGATCGCTGCTTAG 161983 37 100.0 36 ..................................... GCTAGGAATTTATCTGAAAGATATCCCTCGACTGCG 161910 37 100.0 43 ..................................... GAGAAGCCAAACAGACTTAAGCCTGCACAAGCAATTCACTCAA 161830 37 100.0 37 ..................................... AAAGTATGAGAAAGTTTCTGACGCAATATCAGAGAAC 161756 37 100.0 36 ..................................... CTCAGTCGAAAGTATTGCTGAGGCGTTGGGGATAAA 161683 37 100.0 36 ..................................... GGCAAGGTTATTGCCGTCAACGAGCAGTATCAACAT 161610 37 100.0 0 ..................................... | G [161575] ========== ====== ====== ====== ===================================== =========================================== ================== 8 37 100.0 37 GTTTCATCCAGGTTTGCGGCAAGGGGGCGATTGAAAG # Left flank : CCTCTTTCAGGCACTCCTCAAGAGAAAGCAAGAAATTTAGCGATCGCAGCATACCAATCTCGAAAATAGAAATTACTTGCAATTAGTTCAAATGTATTTTATAAATAGAGTGCGCCGTGGTTCATGCTAGCAATAGCCCCTGTGCCATCGACAATTACGAGCTAGTTTGACTGTCGGAAGATAGTCTTGCTTTCTGGCTCAGGTTGACTGTCTACCTCGAAGTTGGGTGCGCTCCCAGCAAAAGGGTGCGGGTCTACCGCAATGCTGGTTAGCCAATCTCACCTCCGAGCAAGGAGGAATCCACCCCTAACTTTTAACTTGTTGGCAAACCGAAGCGAGGTCAAAATCCCTAGGAGGTTTGCCAATCCGTACAAACTAATCCCTTCAGCAGCTTTCCACAGCATAAAGCTGCTTCTTGTCCAACAAAAAGTATCGGATTTAGAGGGGTTTGCCAAAACCATGTTTGAAAAGCACACTATGGCTGCACCTTGAATGGCAGG # Right flank : TAACTTAGTCTTTTGACAACTTTAATAGGCACAATCTTTCGGTTAACAGTGGGTGGATTGAAAGGACTGCCTGACTCGGGGTTTTAATTTAGAAATATTTGCCCCTCGCTATAACGAGCAGAGTTAGCATTCGTTTTAACTGGGTAGAGTCTGTACTGTAAAATGTTGAAGTGGATAAGAATTTGAATGAGCATTCAACTGCTTGAAGCTCTGATGACAAGAATTTGTTAACGAATGATTTCTTACCCCTCGACGACAAGAAGCTGTTAAAACGACACTAAATTGTTAACGACGACATCAATCCGTTAACGACGACAAATAAAGTGTTATTCGACAACAATCACACGAATTTAAACAAAAAATTGCCTGACTCTTAAAAGCCCCCAGAGTCAGGCAGTCTACCTGTAAGGCACGCCTTTAACCGGATACACCAAACAAACTTAGTTGCCCCCTAGTTGCTTAGCTTTTCCGAGTGCGTTCCTCAGATTTGAATCTATTCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATCCAGGTTTGCGGCAAGGGGGCGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.80,-2.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : NA // Array 1 6838-6439 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRK010000037.1 Leptolyngbya sp. FACHB-161 contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 6837 36 100.0 33 .................................... CTTCCAGTTGCGCCACGGTCGCGATTGCATCAA 6768 36 100.0 35 .................................... TCATTGCACCTTTAATAGGCAAGCCAAATGCACTT 6697 36 100.0 36 .................................... ATACGCCATTTTCCATTAGCAGGGTTATAGGTTCGA 6625 36 100.0 37 .................................... GATGTTGATTCCTTCTCCCGAATTAGGGTCGGTAATG 6552 36 100.0 42 .................................... CGCAGTGCCCTCAATGATATCCATCAGTGGATCCGCGATATC 6474 36 94.4 0 ............................G......A | ========== ====== ====== ====== ==================================== ========================================== ================== 6 36 99.1 37 GTTCTCACTCGTTGGGAACCACAATTGAATGGAAAC # Left flank : ATTGAATGGAAACACTCGACCATAATTCTTGAAGCAACTTTCCTAGCCTCTTGACTCAGGTCTCCATTGATGGGGGCAAACAATTGAATGAAAGCTCTGCCTAATATCAACATTGATGCCGCGCTATAAATTCTATGAACCGTTTTGATTAGGAGTGACTTACTGGCAGCTAACAGGCACTTTTGTCATGTAATGTTTGAAGCTGTATTGTGTTCTAGCGCCTTTTCTAAGTAAGTGTCTTAACTATGTATCCTAACGATCGCTTAGTAAGAATGCTCTCGAGCATAAGACCATAGATTATTTCAAAAGTTGGGAGGGTCAGACAATCGCTGAAAGCTTGATTCTTTCGTTGACCCTCCCAAATAGCTTGCTAGGAGGAAGTTTCAGCCGTTTTTTGTTTGAATTATTGATATTGAATATCAATAATTGACAGATGAATCAGACCCCTGCGAAAATATAGGTCTGAGATGCTTTCACATAGAGCGTTTCAGACTCCGACC # Right flank : AACCGGACAGCTTAGTTCGATCTCATTCCTGAATACTGTTGCATCATCAAGTCAGCCAGGAGCCAACCTCCCTCAACCTGCAATGTTTGATGCACCCCTTCCATCACTGTTGCAGCAACAACTAAACCGCTTGCTTTCGTCCAATCAAACCGACGGCTGAAGCCATCAGGGATCACAGAAGACGATCGTGGTGCAACTGATAAATTCCAACCCTCTACGATTGCTCGATAAAGGTAGCCAACTAGATTCTGAATCGTGCGCGGCTTTTGCTAATCTTTTAAATAAACGATCGCAGGTTCAACCCGCTCTGAGAATTCAGCGATCGCTCTAGCTATTTAACTTCCGAATATTTCCCAGAACCAGCTGAGGCAGTACAGTCTGCCTTAGACCTTGGCACTTTCTCCTCAAAAGCTTGATCGAACTTGAGTCATGAGTTGATCAATCGCTTTAAGATCTGTGCAACAACATGCAGCTCATTGCCTTCGACGGTACTCAGAGTG # Questionable array : NO Score: 3.21 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTCACTCGTTGGGAACCACAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 2 8767-7243 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRK010000037.1 Leptolyngbya sp. FACHB-161 contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ==================================================== ================== 8766 36 100.0 42 .................................... AAGAGTCGCTTCTTTAGTAAAGAAAGCATTAAGCTCAGCTTC 8688 36 100.0 38 .................................... GAGCATACTTTACCAGCCCATTGAATTCCTTCTACAGT 8614 36 100.0 41 .................................... AAGGTTTGGATTTGCATTATCGTGATAATGCTTATTAGCTT 8537 36 100.0 38 .................................... CATTTCTTCTAAAGTAGAAGGAACAGGTTCGAAGGGTT 8463 36 100.0 41 .................................... ATAAGATCACCCACAAAAGAAAGCTGATATTTATTACCTAA 8386 36 100.0 41 .................................... CCGGGATTAATCCCAGCCAAACAACTCCAATTTCACTGGCT 8309 36 100.0 40 .................................... GTCAGGGTTGATACCATACGCACCAAGATATTCTCTCCAC 8233 36 100.0 41 .................................... ATAATTTGGGGGGTAAGCTGCGCCAGCAGCAACATACGGTG 8156 36 100.0 49 .................................... TCACTTGTATTCCTGTTGAGAAATATAAGGAAGCTGCTCAAAATGTGAG 8071 36 100.0 41 .................................... ACACGATCGCCCCTCTTCTCTGTCAATCCCTCATAATACGC 7994 36 100.0 46 .................................... TTTCCACCTCTTTACGAGAGGAGCCAATCAAAGCTTCGATTTCTGA 7912 36 100.0 40 .................................... TTGCTGTATACATGGATCTCTAGCGTTTTTCTTGTGGTAC 7836 36 100.0 46 .................................... GCACAGACACTTACCTCCGGGGACAATCCCGTAGTGATCGCAGTGG 7754 36 100.0 43 .................................... TTTAACTGGTTACGCATGAGCGTAAGATGTTGGATGTCTTCCG 7675 36 100.0 39 .................................... CTTCAATCAACATCCGGGTGGCTTCTAATCGTTGCTCAA 7600 36 100.0 52 .................................... TTGAATAATTTGCTGAATAAACTGAGATTTTTGATGAGCTGTCCAATTGCAA 7512 36 100.0 41 .................................... CCCTACCCAAACAAGTCATCAAGTCCGCCAAGATTTCTGTT 7435 36 100.0 39 .................................... CATCGATCGTGCGTCGAATCGTCGGATGATTACGAAATT 7360 36 100.0 46 .................................... ACTCGACCATAATTCTTGAAGCAACTTTCCTAGCCTCTTGACTCAG 7278 36 94.4 0 ...............................A..G. | ========== ====== ====== ====== ==================================== ==================================================== ================== 20 36 99.7 42 GTCTCCATTGATGGGGGCAAACAATTGAATGGAAAC # Left flank : ATCTGATTCGGTGAAGTGGAAGCGGGATAGATGCTAATTTATGTAGTGACCTATGATATTCCGTCTGATAAGCGGCGGAAGAAGATAGCGGATTTGTTGGAAGGATATGGGCAGCGGGTGCAATATAGTGTGTTTGAATGTGCACTTTCGGCTGTGAAGTTCAAAGAGCTTCGGAAGCGATTGCAGCAGCGCATTAAGATCGAGGAGGATAGTGTGCGGATGTATCCGATTTCGCAGCAAATGTTGCAGCAGGTTGAGGTTTGGGGTGGAGTGGAAATCGTGGAACCGCCGGGATCAACGATCGTCTAGTGTCGTATTTGCTGCGAGGCTCAGGAGATTTGCTTGGAAGATTCATTATTTCGTTGGGAGCCTCGCAGCCTTTTGTAATAAGAGTTTCAGCGTTTTTTTAGGAAGTCAGAGAGCGCATTTTTTTTGTTTTTTGCTTGACCCTCGCAAACCGAGCCTAGACATCAAGCAGGGTATAGGTTTCAATAGGAGGG # Right flank : TCTGCCTAATATCAACATTGATGCCGCGCTATAAATTCTATGAACCGTTTTGATTAGGAGTGACTTACTGGCAGCTAACAGGCACTTTTGTCATGTAATGTTTGAAGCTGTATTGTGTTCTAGCGCCTTTTCTAAGTAAGTGTCTTAACTATGTATCCTAACGATCGCTTAGTAAGAATGCTCTCGAGCATAAGACCATAGATTATTTCAAAAGTTGGGAGGGTCAGACAATCGCTGAAAGCTTGATTCTTTCGTTGACCCTCCCAAATAGCTTGCTAGGAGGAAGTTTCAGCCGTTTTTTGTTTGAATTATTGATATTGAATATCAATAATTGACAGATGAATCAGACCCCTGCGAAAATATAGGTCTGAGATGCTTTCACATAGAGCGTTTCAGACTCCGACCGTTCTCACTCGTTGGGAACCACAATTGAATGGAAACCTTCCAGTTGCGCCACGGTCGCGATTGCATCAAGTTCTCACTCGTTGGGAACCACAATT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCATTGATGGGGGCAAACAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 3 14059-10618 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACJRK010000037.1 Leptolyngbya sp. FACHB-161 contig37, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================================================== ================== 14058 36 100.0 37 .................................... TCGAGAACGTAACGAGAAGCAACGGACATAGAGCCAG 13985 36 100.0 38 .................................... CTACGATCCGGCTGACTACTAACCCCAACGCGCAGCAA 13911 36 100.0 41 .................................... TTCTCAGTTTACGATTGTGGCGTGATTGTGGCGTGATCGGG 13834 36 100.0 48 .................................... CTGAACCATTTGTAACTTACTCAGCTACTTTTTAATTCTTATTTTAAG 13750 36 100.0 37 .................................... CTCTTCCCTGTCTTCCGTTCCGCTGCAACGTCTCGAT 13677 36 100.0 44 .................................... TCACCAGAGAATGCCATCTGCATTAGTGCACCCCCCATATTCTA 13597 36 100.0 43 .................................... TGTAAAGCTCTTTCATAGCTTCAAATCCTTTACTGAAGGTCGG 13518 36 100.0 40 .................................... ATGAAGCGCTTAGTGCCTTTGCTTTGAAACTTCAAGAATG 13442 36 100.0 43 .................................... ATTTTACGCCCTTCAGAAAGAATCATTTTTGACTCAATAACTT 13363 36 100.0 43 .................................... CGCGGATGTTCCCCGTCTTTGAGGGCATTCCGGTGGTCATGGA 13284 36 100.0 42 .................................... GTTGGTTTGTAGCGATTTGGCAATTGATACATCGCTCTCGAT 13206 36 100.0 38 .................................... CTTGCCATAACTGACAGACAAGGTGTCAGGGGATTTGC 13132 36 100.0 40 .................................... GCTGTTTTTCTCGACCTGGAATTAGAAGCCTAGCTGGAAA 13056 36 100.0 40 .................................... CATCAACTGCGGTGTCAGATTCTAAACCATAACCATTGTT 12980 36 100.0 44 .................................... AGTTCTGTCTATGTTCGTGACCGTTGTTTCTAATCCGCTAGCAA 12900 36 100.0 52 .................................... TTGATGCATTCGTAGGTCGCAGTTCAGTAAGTGGTGATCACTTCGAGCGTGA 12812 36 100.0 40 .................................... TTGGGTAAAGGGAGCTGATCGGGCGTTTGAATCGACTGTA 12736 36 100.0 38 .................................... CCACCCACACGGGGGGACGGGCGCTCCACCTATATGTA 12662 36 100.0 45 .................................... GGAATGGATCAAAGTTGCCATTTGCATCCAAATAGATAGGATCAA 12581 36 100.0 42 .................................... ACGGTTAGCGTTCTGCTTACCAAAGATTTTCCAAATAGGCAT 12503 36 100.0 48 .................................... TTCAAACTGCTCGTCAAATACCTCATCCCCTGCATGTCCCATCTCTAG 12419 36 100.0 36 .................................... TCATTAATCAGCGAAAGACTTCTTACTTGCGGCGGT 12347 36 100.0 36 .................................... TCACTTGCAGCCGCTTTGATTTCGGCTAATTCCTGG 12275 36 100.0 37 .................................... TGAAGTTCAAAGCGAGTCCAACTTGTTCGAGTGTTTT 12202 36 100.0 36 .................................... ACAGTTCAGGCAACGAAGCTTGCGGCGAATTGCGAC 12130 36 100.0 34 .................................... ATCACAAGCTTGTATCCAATAGAAGGTGTACCCG 12060 36 100.0 45 .................................... TTTATGGGTTTTTATCGAATAGATTGGGTGATAAAGGCTTATCTG 11979 36 100.0 37 .................................... CAAATTTGTATCAGCAGCAATACTAATTAGTCTTTCA 11906 36 100.0 40 .................................... GCCAGCACAGCACACATGTCTTAGCCTCAAACGTGGGGAG 11830 36 100.0 35 .................................... TCCAAGAACAGAACGCAAAATCTAATTGTTTTAGT 11759 36 100.0 42 .................................... ATGAAAGATGTGCAGATTATGAGTGCCAAGATTGCATCACAA 11681 36 100.0 39 .................................... CCGCGCAAATTGCTCACTGGACACAAACGCAGAGCGAAT 11606 36 100.0 39 .................................... TACTTGTATTGCTCGAAGTTGATCTTCGGTGCCGTGAGT 11531 36 100.0 42 .................................... TAGATCTGAATCTAAGATCAAGAATCTGAATTAAGATCTGAG 11453 36 100.0 36 .................................... CTAAGAAGGTAGTAGTCAAACGCTCCACCATACGAG 11381 36 100.0 48 .................................... TCTAGAAGTACATTATTGTTAATTACTGGCATTTAATATCTACCTCCA 11297 36 100.0 40 .................................... TGAAATATTAAATAATGGATGCTCTGAAAGTAAAGCTACA 11221 36 100.0 39 .................................... CACGATCATTGCTATTACCAGAGCCAATAAAATTGATGC 11146 36 100.0 35 .................................... CTGTATCTTTTCTAGCTTGATCTAATTTCTTTGAT 11075 36 100.0 39 .................................... TAGATAAACAGGATTGTGTCTGCATCCTGTTCAATGTTG 11000 36 100.0 41 .................................... GAATCGAATTGATGTAATTCTGCCTTTCGATGGTCATAAGA 10923 36 100.0 234 .................................... TGAGCATTGAGAATTACTCTATAGATCAAATGAATGGTAGCGATACTGATTCTCAAAAACGTCTGAGCCAGCATTTTCATCTACCAGCCCATTCTCTAATCAAGCCCTTACAAGGCGTCCTTTCAGTCACAATCAGCCAAACCAGATCTAAGTAACATTGATGTAACAAATTTATCCAGTTTCCCGCATTGCCACTACAATACCTTTGGCGAAAGCGCAGTTAGAACGATCAGG 10653 36 69.4 0 ......C.C....C.AA..CC.C.....C.A...C. | ========== ====== ====== ====== ==================================== ========================================================================================================================================================================================================================================== ================== 43 36 99.3 45 GTCTCTTTTAATAGAGGCAATTAATTGAATGGAAAC # Left flank : CTTGTTTCATCAGTTGAAAGGTTTAGAAGGACAAGAAAAAGTATTTGAGAACTGGCAGTCACCGAATGAGCCAAAATGGAAACAAGATCCTGAAGGTCATTGGAAGCTGAGGGTGTTGAAGTGTTTAAACTTCATCTGTGGAGAAAACTTTAGCTCTCTTGAAGAAGCCAGTTTACTTGTGAAGGTGCATCAGAAAATAGAAAGGGCGATCTCTCAACTATAATGTTGTTCCGTTCTGATGAGTTCGATCGCTTAAATCGACAGATTTTTCAACTGCTCGATCGTTTAGTTTGATGGGGATAAGTTTTGAGATGGAGGGGGTGCGAGGCTGGGGCGATTTGGCTGAAAGGGTGATTGTTTCGTTGGGAGCCTCGATGCCTTATGGGATAAGGGTTTTGCCGCATTGTTTGGGGTTAAAGTTGATGAAATTATTTGTTTTTGGACTGAGCCTCGCAAACCGCTGCTGGACGTTAAGCGGGGATTGAGTTTCAATGGAAGGG # Right flank : TGCGCCAGTTAGTTCGATCGCTGTACAACAATTTTTCCCACCCGCGATCGCATCACTCTATCTTTCGCAATTTGATCAGGGAGCACAGACAATGATCATCTACAGAAAAACCTCATGTATCTTTCAAATCGCGCCCTACAAGTTCGCAATGCCTCGATTGCCGGAATCAGCGGAGCCTTAACCTTAGTTATTCTGCTGATTGCTCCATTAGGATTAGCAGCCGTCATCATCAACACCCTGCTTGTCACGATCGCAACTTTTGCCACCGGAACTGTCGTCGATCGTGTCGTCATTTCAATGCAGCGCGATCGTAATTTACCTCCAACTGCTGACCTTCGCAGACGAGAAAGCAGCAATGTGGATCGATATCGGTAGTAGGACGCAGTCGTGAAAACGCTCTATGTTTCTCACCAGGGTTGCTATCTATCACTGCGACAAGAATCAGTCTTGATCAAACGAGGTGAAACGATTCTGGATCAAGTTCAGTTGCCACTGCTAGA # Questionable array : NO Score: 2.76 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.45, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTTTTAATAGAGGCAATTAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.41 Confidence: MEDIUM] # Array family : NA //