Array 1 891626-893805 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006956.1 Bibersteinia trehalosi USDA-ARS-USMARC-190 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 891626 32 100.0 34 ................................ AGCTAACGCTATCACAGCAGGTAAAATTGCAACG 891692 32 100.0 36 ................................ ATTTGCTACAGCTTTAGAGACATTGGTTATATCTGG 891760 32 100.0 35 ................................ GTTTAAATTAAGTTGGACGAATAACCCTGCGTGGA 891827 32 100.0 35 ................................ AGCGTCGTCACTAACGCTTTCTACTTTCTTCTCGT 891894 32 100.0 37 ................................ TTGATCTCACTCACCAAGCTCTTGCTACGCCTGATGG 891963 32 100.0 35 ................................ TTTAGATCTAAAATATGATATTTAATAAGATTTAG 892030 32 100.0 36 ................................ AAAGTTAATTTTTAATAAATAACCGCCCATAAAAAG 892098 32 100.0 36 ................................ TTTAACAAGTCGGATAATCTCAACCATTGAGCTACG 892166 32 100.0 35 ................................ GTTTCAGGCTTTCGCCTTCGCTCTCCTTGTTGTTG 892233 32 100.0 37 ................................ ACAGGAATTTCTATCGGGCTGAAATTTGTGCCTGTAG 892302 32 100.0 35 ................................ ATTGAAGCTGTTAAAACCGCAAATCAGAGCGTAAG 892369 32 100.0 35 ................................ GAGAACTGGCGTGGATCTGGTTTGCAGGGCAACAG 892436 32 100.0 35 ................................ ACGATAAATCGGCAAGCGGGGATTTTTGCTGCGGG 892503 32 100.0 35 ................................ AAGTCATTTTATCCGCTATGGATAAACTTACCTCG 892570 32 100.0 35 ................................ CTCCCATAATGTTTGATTGTCAAATGTTGCAATAG 892637 32 100.0 35 ................................ TTCGCCTGTACTCCAAGTCCATTTACTATCTTTAG 892704 32 100.0 35 ................................ TAATGGAAATGGTCGTATGACAACAATCCGTATGT 892771 32 100.0 36 ................................ AAAAAAATGGTTTGCACCCTTTCCCATGGCGTGAAG 892839 32 100.0 35 ................................ TCATAAATTGCATTGATTGTATTCGCCCCTTTTTG 892906 32 100.0 34 ................................ GGGAACCCTGATGCAGCCATGCCGCGTGAATGAG 892972 32 100.0 35 ................................ CAGAACTCGTCAAGGAATACCACCACACGGCGACG 893039 32 100.0 33 ................................ GTTGGTGGTATTTTTGCCGGTGACAAAGCACAA 893104 32 96.9 35 .......................G........ TGCATATAACCATGATAATCAAAGCCCTTGGACAG 893171 32 100.0 35 ................................ ACTCGTGGACAAATACCAATACACAGATGAGAATG 893238 32 100.0 35 ................................ TTTAAATTGAGGTAGGATCTCTTGCTGCATCGGTG 893305 32 100.0 35 ................................ CACGATATCGATATAAAACTGGCTGAATGTTTAAG 893372 32 100.0 35 ................................ TAATGTTATCTATCGGGACAGTAAAATCCGCAGGG 893439 32 100.0 35 ................................ GATAGTTTCGCATCATAATCTATACTATCAGCCCG 893506 32 100.0 37 ................................ CCAAGATTTTCCGGTGGTTTTGCAGGCAATATTAAAG 893575 32 100.0 34 ................................ GAAGCTAATATTCCAAAAGTAAAAGATGGGGCGG 893641 32 100.0 36 ................................ TATACAAGCCAACTCGCATTTAAACAACGACTATAG 893709 32 100.0 33 ................................ AATTTGTGGGCGGTGCAACTGTGGGCGTTTGGC 893774 32 93.8 0 ........................G......T | ========== ====== ====== ====== ================================ ===================================== ================== 33 32 99.7 35 GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Left flank : AGGAATTGGCAACTATGCTGATGTTGATTACCTACGACATTTCATTTGATGACCCAGAAGGGCAGGCTCGCCTACGCCGTATTGCTAAGCATTGTTTGGATTATGGTGTACGGGCTCAGTATTCTGTATTCGAGTGTGATGTTACGCCCGACCAGTGGGTAACACTGAAAAATAAATTATTGGCAACTTACAACCCTGATTGTGATAGTTTGCGTTTTTACCATTTAGGCAGTAAATGGCGTAATAAGGTCGAACATCACGGTGCAAAACCTGCAGTGGATATTTTTAAAGACACGTTAATTTTATAGATCGCTAACCGGTAGTTCTCATGAAAATGCTAGGAGGTTAGCGAATCGACATTGTTCTTTAATAATCAAGGAATTAGAAAAAATAAGGTACAGTATATTGGCGATATGCTATACTTTTTCCCACTCTCTACAAAGCGTTAGCGAATAAAGGGCTAAAAAGCCTGATATTTCAAAATGTTATCTAGTAGGGGG # Right flank : TATAACAGGGCAAAGAAAGAATCTACAATAAAAAATACATCTTTTCGACTAGATTGTATTATAAGTATATTTCAGCATGACGAAGAAAAGTTCGCCAAGCGGTCATTTTTTTTAGATTTTTTGCAAAAAAGCGCTTGCAAAGGATTTTGAAATCTCTATAATGCACGCCATCGCAACGACGCACTGTTGCAAAGATAAATTTTCCAGTGCGTCGTTCTTTTTTGTTCTTTAACAATATATCAGACAATCTGTGTGGGCACTTGTTGATTGATTAGTTAAAAATATTTTTTAATTTTGAAGTCTTAATAGGTGCTTAAACTAGAAATTCATTACTTCTATTTATAGAAATAAAGCGATTTATAGCTAGCAGTTATTGAGCGATTAAACTTTTTGAATTGAAGAGTTTGATCATGGCTCAGATTGAACGCTGGCGGCAGGCTTAACACATGCAAGTCGAACGGTAGCAGGAGAAAGCTTGCTTTCTTGCTGACGAGTGGCGG # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTACGCGTGGCTGTGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGCGTGGCTGTGAGTTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 973013-972717 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006956.1 Bibersteinia trehalosi USDA-ARS-USMARC-190 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 973012 32 100.0 34 ................................ AAAGTTAACCGTTAGTGGTAAAATCAATGGTTCG 972946 32 100.0 34 ................................ GTGATAGGCGATTTAACCTCATATACGCACGCCA 972880 32 100.0 34 ................................ GCTGCTTTTGGCATAGTCCAACGCCTGCTTAAAA 972814 32 100.0 34 ................................ GGCAAAGGTTGGGTAAATCGTGTAGCAGGTAATC 972748 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 5 32 100.0 34 GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Left flank : ATGACTGTCGATCTTGGTATTAATAGTAATGATAAAGTGGGGGATGAAGCTGAGCTTTGGGGGGAAAATTTGTTAATTGAAGAAGTCGCTAATGCCATGGGGGTAATCAATTATGAATTAATTACCAAATTAACCCCAAGAGTGCTTTTTGAATATCTTGATTAACGCTAGCACATTTAAATAATCTTGTAACATCATTCAAAAAAAGGATATTACACAGCGTTGAATAGTTTGCAAAAAATTCCCTGAAATAGACCGCTTACATAAGATAAAGCAACATTACCTCCTAATGTTTCATGTTTATTTCTCTTCTCGCTAACCCTCGGTTCTCAGCAAAATACCAAGAGGTTAGCGATTTATTATTTCCCTTACGAATCAAGTTGTTACAAACTTCCATCATATAACAGATATTATGCTACACTATAAATCAATCCCCATATTTTAAGCTAGCGAATTGTTAGGGTTTAATCCTTGTGACGTAATGCTTTGAGATATAGGGA # Right flank : TTAATGGTTTTGCATACCGTTACCCCCTCAAGTAGCAGCTACCTACGGGTAGCTGCCATTCTATTTCTAGCAAAGATGAATGGGGTATCCGGATTTAGCGGTTGATCTGCGCTAGACGTAATTTTGTAAATAAACCGGATTTTAGGGTTGACGGAAAAGGCCAGATGCCCTAATATTAGATTCAAGAGCTGAGAACAACGGCTCGGGCATAAGCCCAACGGGCGCACCGCCGAACTTGGTGCAGGATAGAAGCCATGTCATACGATGCAAATGATGCGCTGAATGAAATCGAAGAGGCGCTTAGCGAGCTTGAAAGGGTTGCTGAAGACCTAATCAACAACAACCCGAATAAAGAATCAGAATTACGCGGCCAAGGGGTTCACCAAGCGACAAAGCACCTCCGTTTTCGTATTCGCAACATCCGCCGCGGCGAAGCAATTTGACTAACATGCCGCCCTAGGGGCGGCTTTCAGCGAGGTCAGCATGAAAATCAAACTCTA # Questionable array : NO Score: 6.06 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GCAGCTACCTGTAGGTGGCTGAGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-1.80,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [51.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 1574284-1576110 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006956.1 Bibersteinia trehalosi USDA-ARS-USMARC-190 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 1574284 32 100.0 34 ................................ TGCAAACAGCCCTAACAAGTGAATCATTGCCATT 1574350 32 100.0 34 ................................ TACGATTTAGTTACAAACACACGTTACGGTATGG 1574416 32 100.0 35 ................................ CCGAAGTCGTTATGTACTGAATGCCTATGAAGCGG 1574483 32 100.0 35 ................................ AACTTGCTCAATAACAAATTGATTGACAATTTCAT 1574550 32 100.0 35 ................................ AGGCTTTTTCCCTTGAGCCTTTAAACGCTTATTTT 1574617 32 96.9 34 ............A................... GCAATCTGCCTGGCTAAATGAGAGTGCCACGTTG 1574683 32 100.0 34 ................................ GTTGTTAGAGCGAGTGCCGTAATGAATTTTATTC 1574749 32 100.0 35 ................................ CCTAATAACCCTGATAAGGATTAAATTATGAACCT 1574816 32 100.0 37 ................................ GCATCAATGGCGTGCCGTACTTAAGCCGTGATGATAC 1574885 32 100.0 34 ................................ CATCGCTTTGACTGTGCCTTAGAAGATACATCAG 1574951 32 100.0 34 ................................ CGCCAACTCGTCTTTCTTTTGCCAGCACTTCTAG 1575017 32 100.0 34 ................................ ATTTTAGGAGAAATCACCATGAAAAAAGCAATCT 1575083 32 100.0 34 ................................ ACGCATTTACACTCATTTGAAAGAAAAAGGCGAA 1575149 32 100.0 34 ................................ GTGTAAAACCTGTACCAACGCTCGCGGTATAACG 1575215 32 100.0 33 ................................ TGGATTTAAGGTTGATTTTAGTGGGTTTAAGCT 1575280 32 100.0 34 ................................ ATCAGCCCCCGAACCTAAATCGTGGAAAAACGAT 1575346 32 100.0 34 ................................ AATAGTGTTGTGGATATGTTTTCTGAATTTGCCT 1575412 32 100.0 35 ................................ CCGTTTAAGCGATGAAGAAGACTGCAGCGAAAGAA 1575479 32 100.0 35 ................................ TTTAAATGGCTGAAGGAATACGAATGAGGGCCTTA 1575546 32 100.0 33 ................................ TGGATAGTGTGTTGATTAACTTATACCAAAAAC 1575611 32 100.0 34 ................................ TCCTGCTGTATTGTCTTACGTTTTTTCGGGGCGA 1575677 32 100.0 35 ................................ CCTCATCGCCATAAATGGGGTTTTTACCAAATGGG 1575744 32 100.0 35 ................................ CATCAGAATGATAACGGCGAGACTAACGGCTCTAC 1575811 32 100.0 34 ................................ GTTGATACATCACCCTCTGCTGTAACATTACCGC 1575877 32 96.9 35 .............T.................. ACAAACCGCGGATAAGGCAAATCGCCATAGGATTT 1575944 32 100.0 35 ................................ GACATCACGGTTTCATAGTAGCGCTCTCGCAATGG 1576011 32 100.0 35 ................................ TCATCGGGCTTTAAGGTCAAGGCATTATCCAGTAA 1576078 32 90.6 0 .........................C.A...T | G [1576098] ========== ====== ====== ====== ================================ ===================================== ================== 28 32 99.4 34 CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Left flank : AATCCTCCAATTATTGTGATTCACGGTAACCAAATTGAGCGTTTACCAGATAGCTATAAACGTTATTTATCAAATTATTATCGCAAGAGCCTAAAAATTATCGGCTCACCGATTCGAGTGCTATTCCAAGAAGGTAACAACCCCTTTGCCGGCAAGCGCAATAAACTCACACCAAGCCAGCTTCGAAAACGTAAACGCTTGATGAAGTTTATTAAGAAAAATCGGAAGTAACTTATTTGCACCTCAATATCCTTAGTATTGAGGTGCTATTTTCTATTGATTTTCTCAATATATCCTACCGATGTATAATTCGCTATCTCGGAGTTCTCTCCAAAATCGTATTAGGTTAGCGAATTTCATTTTTCCTCAATAATTCAATATGTTAGCCTATTCACGCTATTTTATCTTTAACCTTATGCTATACTGAATCAGCCTATTTTAGGATATTAGCGAAAAAGAGGTTTTCGAGCCTTGATTTGTAATGCTTTTTACCATAGGCA # Right flank : TACTTTTTCCACAAACAAGAGTCTATTTAATGCTTACTCTATATTGCAAAATAATATGTATATCACAACGTCTCCTTTGATTAATCTAGATAGCATGCGATCTTAGGAATAGGCATTGTAAGTTCTTGTATATAATTGTAGTATGCATCATCTATTCTCTGCATAAATTTACGAGCTTTAACATGAGTAAGACCGAATTTATCGCCCATGTTCGAAAATCTAACAAACAGTTACAGTCCGTTTCAAACCATCTTTTAGAAACTGCCTCAATCGCAAGAACTTTGGCTGCTAAATTAGATTTAGCTGATGCTGGGGAATTACTCGGTTTAATGCATGATTTTGGTAAATATTCTAAGAAGTTCCAAACATATATTCGCCACGTAACCGGTATTTTAACTTACGCAGATTTAGATAGCGAAGATGAAAATAATGGAGGGGATCATTCAACTGCAGGCGCTCAATGGATTTATGGTCGTTTAAGAAAATTGGGCGCAGCTAAA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CCAGCTACGTACGCGTAGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-1.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [63.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 1585140-1587624 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP006956.1 Bibersteinia trehalosi USDA-ARS-USMARC-190 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 1585140 32 100.0 34 ................................ TTTATCTGCAATAACGTAACGATCTATAGACGAG 1585206 32 100.0 34 ................................ ACCATATTGTTATTTATGTCGGACATATCAAGCA 1585272 32 100.0 34 ................................ TACTTTCTTCTCGTAGAAATCGTTTGCGTCAATA 1585338 32 100.0 35 ................................ TACGCTAACGGCAAAAGTGCAACAAAAAGCGACTG 1585405 32 100.0 34 ................................ CAGGGGCAACCTCAATTAGATCGTAAGTGTTGAT 1585471 32 100.0 34 ................................ TCTACAAGTTGAATGGTTACACGTTCGCCAATTT 1585537 32 100.0 35 ................................ AAGTGTAGTTTCTGTAACATACGCAAATAGCGGAG 1585604 32 100.0 34 ................................ TTGTTGAAGAATACTCACAAGAGAATAAATATGT 1585670 32 100.0 35 ................................ AGTTAACACGTCTTGATCTTGTGTCCCTGAATTTG 1585737 32 100.0 34 ................................ CCCCCCCGTAAAGTCAAAAAAATTTTTTTATATT 1585803 32 100.0 36 ................................ TAATATGCCCTTGCATAAATTCCACTTTGCCGTGAA 1585871 32 100.0 33 ................................ GTGGCAAGCACTACCGACACCAGCGGTGATGGT 1585936 32 100.0 35 ................................ CCTTTATTTCTCCACGAGAATAATCTTCTTTCTTG 1586003 32 100.0 33 ................................ TGCAGGCAAAAAAGCAATGGCATTGCTTGATAA 1586068 32 100.0 34 ................................ CTATGGTTACGCATATGGAATAAGTTTTTAAACC 1586134 32 100.0 34 ................................ ATTGATATTGAAGAACAACAGCTTGCCGTCTCTG 1586200 32 100.0 33 ................................ TTAGATTGTCAATAACTATTTTATAAATTTTCG 1586265 32 100.0 35 ................................ TAATCTTGTTGAGGGAAGTATTGAGAAGACAGCGA 1586332 32 100.0 34 ................................ TAGCGTAAAGATAACTAAATTTAATCTAATATAA 1586398 32 100.0 36 ................................ AGGCATATTTGGTGGAGTGACCGACGGCATACCACC 1586466 32 100.0 35 ................................ CACTGCTCAAATTCAGCCTGAAACCACCGTTCACA 1586533 32 100.0 34 ................................ CGCCAAATGGATTTGGAAGTACAACGGCTGAAAG 1586599 32 100.0 35 ................................ TAGTTGAGTGATAACTTGGGCTTGTGCTTGGTTTG 1586666 32 100.0 35 ................................ ATCGGCATACACTGCAGGTAGTAAGTGAAGAACAG 1586733 32 100.0 34 ................................ CCCAGTAGTCACAGATAGGAGATTTAATGTCGGG 1586799 32 100.0 34 ................................ ATATGGTTATATGTTAGGTTTAAACTATGTGCTG 1586865 32 100.0 34 ................................ ACCGAAATTGATGAATGGACTTATGAAAGTATTG 1586931 32 100.0 34 ................................ TGTGTCTAGCAGTTCTCCCCCTCTACCAGAACAG 1586997 32 100.0 34 ................................ CCATATTGCCAAAAGGTTAAAACCAAAGGCCGCT 1587063 32 100.0 35 ................................ GCTTTGGTAGTTGGGATAAAGCTAAACTCCGGCAT 1587130 32 100.0 34 ................................ TCTCAAATGTTGATCACCGCAGTGAAAATGGCAG 1587196 32 100.0 34 ................................ ACGCGAAGAACCTTACCTACTCTTGACATCCAGA 1587262 32 100.0 33 ................................ ACTCCAAGTCCAAGGAGCGAAGAAATGGCAGCG 1587327 32 100.0 36 ................................ TGCCCCCAACCAGGTTACACGGTTGAAAACGAACCA 1587395 32 100.0 35 ................................ CCCGATGGGGAGATTAAGCGACCGAAGTCTTGGAT 1587462 32 96.9 33 ..........T..................... ATCGTGGGATAAGCGGTCAGATAATCGCCCAAT 1587527 32 93.8 34 ..........G..A.................. ATCTGAAGTATATCTGGATAGCGTCTCCAGCCTT 1587593 32 71.9 0 ......T..A..AC....T...CGC......T | ========== ====== ====== ====== ================================ ==================================== ================== 38 32 99.0 34 GCAGCCACCTCCGGGTGGCTGTGAGTTGAAAC # Left flank : TCAACGATGATGATGCTGATTACTTACGATATTTCTTTTGATGATGCCGAAGGGCAGAAACGCCTACGCCGTATCGCCAAACATTGCCTCGACTATGGTATTCGCGCTCAATATTCGGTTTTTGAATGCGATGTCACACCCGATCAATGGGTTAAACTCAAACAAAAACTCCTCGATACTTACAATCCTGAAACAGACAGCTTACGCTTTTACCATCTCGGTAGCAAATGGCGTAATAAAGTGGAACACCACGGCACCAAGAAAGCGGTAGATATTTTTAAAGATACATTGATTTTGTAATATTGGGAACATCGCTAACGTCTGGTTCTCATCAAAATACGAGGAGGTTAGCGATTTTAATTTGTCCTTTAATAATCAATCAGTTAGAAATTTCTCCGAGTACTGCACATCTTATGTTACACTTAAATCACTCCTTTTATTTCAAGTTAGCGAATCACAGAGCGTTAAGCCTTGTGGCGCAATGCGTTGAAATATAGGGA # Right flank : TATTGCATAAGAAAACACAAAACAATCTATATTTTCTGCTGAAGTAGCTAAATATCCGTTATAATGTCGCCATTTTTCATCTTATCTTAGAGTAAAAAATTATGATGATGCACTACTCCTCTCAATTTAACCATGCAAAAGTATTAGTGCTTGGTGATGTGATGCTAGATCGTTATTGGTTTGGATCCACAAATCGAATTTCCCCTGAGGCACCGGTTCCTGTTGTCAAAGTGCAGGAAAATGAAGAACGTGCAGGTGGTGCGGCGAATGTCGCGATGAATATTGCTGCGCTTAATGTGCCTGTCACCTTACATGGCTTAGTTGGGCAAGATGATGCAGGTTCAGCATTAGATAAATTATTAAACTCTCACCAAATTCAAAACCACTGCGTAGCGTTGGATAGCCATCCAACTATCACTAAATTACGCATTCTTTCCCGCCATCAACAGCTATTGCGTTTAGACTTTGAAGAAGGTTTTCATAATGTTGATAGTAGTGAG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCAGCCACCTCCGGGTGGCTGTGAGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GCAGCCACCTCCGGGTGGCTGTGAGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.30,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //