Array 1 2177-2877 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXK01000057.1 Salmonella enterica subsp. enterica serovar Lubbock strain 12TTU07-4-38-1 NODE_57_length_35114_cov_21.3553, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2177 29 100.0 32 ............................. CGGGTGATTTTAATGATGTGCTGACTACCGGC 2238 29 100.0 32 ............................. GCGTTCTACAGTAAGGTTTACAGCCTGAGCAA 2299 29 100.0 32 ............................. GTACGGAAATTTGTGTCAGATATTGCCGGGAA 2360 29 100.0 32 ............................. TGCCCACAGTTCGTCGTGAATTGCGCAGGATA 2421 29 100.0 32 ............................. GTTCTCAATAAATTTTCCCGGCTGCCGGATCT 2482 29 100.0 32 ............................. ATTGGGACCATTCCAATGGTCAGTTTCACGGA 2543 29 100.0 32 ............................. AAACCAGAATTGCTGAAGTAAATTGCAAAAGA 2604 29 100.0 32 ............................. ATATCGAACGGGTTACGGCTGTCGGTGTAACT 2665 29 96.6 32 ............T................ ATATTTTGGCAACTCGTCGTACATTATCGCCA 2726 29 100.0 32 ............................. TCGCACAACGCCTGGATATCCGCCCATCGGCC 2787 29 100.0 32 ............................. TCTTTGTGGTAAATATGGAATCGATTAACCCC 2848 29 100.0 0 ............................. | A [2875] ========== ====== ====== ====== ============================= ================================ ================== 12 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGATTTCTCAGCGGGTTGATACACGCAAAGAGGTTGAGCGCAGCGTAGATATTGGCTGGCTACATAGTGAAGAGGCGTGTCTTGAACATATAGGTGAAGCAGTGGAAAAAGGAAACTGTATCGCCTGGATACGTAACTCCGTTGATGATGCGATTCGTATCTATCGCCAGCTTCAACTGAGTAAGGTCGTCGCCACGGAAAACCTTTTACTCTTCCATAGTCGCTTTGCTTTTCACGATCGTCAGCGGATTGAGTCGCAGACGCTGAATCTCTTTGGCAAACAGAGCGGCGCGCAACGTGCCGGTAAGGTCATTATCGCCACGCAGGTCATCGAACAAAGTCTGGATATTGACTGCGATGAGATGATCTCTGATTTAGCGCCGGTGGATTTATTAATTCAGCGGGCCGGTCGACTACAGCGTCATATTCGCGATCGTAACGGTCTGGTGAAAAAGAGTGGGCAGGATGAGCGAGAGACGCTAGTGCTGCGCATTCTTGC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 8847-7537 **** Predicted by CRISPRDetect 2.4 *** >NZ_QYXK01000089.1 Salmonella enterica subsp. enterica serovar Lubbock strain 12TTU07-4-38-1 NODE_89_length_14196_cov_19.5389, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8846 29 100.0 32 ............................. CCTTCGTTATTTACGACATTAACATTAACCGT 8785 29 100.0 32 ............................. CTTAATGCTTTTTCGTCCGCCCATAGAAATAA 8724 29 96.6 33 ...................A......... GTATCAAAGGTCATCAGGTGTTCGCCTTTCAGC 8662 29 96.6 32 ............................A GCAGATTGGTATCTGGTACGACGACTGCCGCC 8601 29 100.0 32 ............................. ACTGTTAAAATGCTTCAGGACGGTGAAGTAAA 8540 29 100.0 32 ............................. TCCACTGTACCGCCGACAGGACTTTTTAACGT 8479 29 100.0 32 ............................. CGCAGGCGCTGGACGCGCTGCACAGACAGTCC 8418 29 100.0 32 ............................. GTGCGGTCGAGGTGGCGAGGTTGATAGCAGTA 8357 29 100.0 32 ............................. CGAATATGTTGATCGGGATTCTGGCCGCACTG 8296 29 100.0 32 ............................. CGTTTATCGCTCTGAGAGTGGCGCTCGTTACT 8235 29 100.0 32 ............................. GCGCTGACCATGATTGCAGTCAGGGTCGGCAT 8174 29 100.0 32 ............................. GGGGAATGATGAAACGAATTAGTAAAAACAAA 8113 29 100.0 32 ............................. AAATGGCATAGCCACCCCAGACAGTGGCTTCT 8052 29 100.0 32 ............................. GACCGATCCGGGAACAACCGGAACAACGCGGG 7991 29 100.0 32 ............................. CCAGTAACGCTGGCGTGATAATTTTGGTCGCC 7930 29 100.0 32 ............................. CAATACGACTGGACTGGATTTGATTCATTAAC 7869 29 100.0 32 ............................. CAGAGCCTGGAGCTCTCGACTCCTGATTTTGG 7808 29 100.0 32 ............................. GGGTAACGTCCTTTGCTGGTGTTTTTGTGTCT 7747 29 100.0 32 ............................. AAACACCAACATTACGGCACGCAAGAGGTTAT 7686 29 96.6 32 ........T.................... GTTGGAGGGCGGTTCTGATGGCGAAACTTATC 7625 29 100.0 32 ............................. TACCAACAATTCAGCGTTACGCCAACGGTAAC 7564 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================= ================== 22 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACACTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGAGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGGAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //