Array 1 63264-69633 **** Predicted by CRISPRDetect 2.4 *** >NZ_CEGT01000052.1 Streptococcus suis strain LS7T, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 63264 36 100.0 30 .................................... TGCGCCACCGTCAAAGTAGCCTTTAGGCTC 63330 36 100.0 30 .................................... CATGCCCCTCTTTCAGCAAACGAGTGACCA 63396 36 100.0 30 .................................... CATCCCAGATGGACATATTATCGGTGGCTT 63462 36 100.0 30 .................................... TAGACCGAAATTACCACGCTTCCATATTAG 63528 36 100.0 30 .................................... GGTACTTCTGCTTGTCTTCGGCGTTCATCT 63594 36 100.0 30 .................................... CTTGGCTACAAGTCCAACAGGTACAGCGAC 63660 36 100.0 30 .................................... CATCTATATCAATCAACATACCAATACTAA 63726 36 100.0 30 .................................... TGGAACGCTTGGCAATCAATCGAGTAGATG 63792 36 100.0 30 .................................... ACGATTGACAAAACAAGCGTAGCGACGTTT 63858 36 100.0 30 .................................... TGCTAGTGGTCGTGTGCAGTCTGAGATATA 63924 36 100.0 30 .................................... TAATGACTGACTTTCTATGACTTCTGTTGA 63990 36 100.0 30 .................................... TTATCAGCTAGGTCTGCTTTTGCGTTTGCT 64056 36 100.0 30 .................................... GTTAAGACATGAGTCTTAAACGTGAGATGT 64122 36 100.0 30 .................................... CAATAGTTCGGAAGTCGGTGTCTGCTGTGA 64188 36 100.0 30 .................................... TGCGTGAGTTGTAACTACCTTTGCCGAATT 64254 36 100.0 30 .................................... TTTTCTTTTTTGCAAGTGATACCTGCAATC 64320 36 100.0 30 .................................... CACATCATCATCTCGACGTCTACATCGTCT 64386 36 100.0 30 .................................... CGTTGTCCGAATTGTTCCATCGTTTCACCC 64452 36 100.0 30 .................................... AATGTTCTCGTCTGGAGAATAGTATTCTTT 64518 36 100.0 30 .................................... CGTATGCTCGACTTGACTATGTCCGCCTCT 64584 36 100.0 30 .................................... TCACTATGGCAATCGAATTACGCCAATTGT 64650 36 100.0 30 .................................... CAGACGGTGATTTTTACCTAGTAAACCACA 64716 36 100.0 30 .................................... ACAAACCAAATTTTATTAAACGTGAACGCG 64782 36 100.0 30 .................................... ATGCTTTTGAACTATTAGGCGCACTAGAAA 64848 36 100.0 30 .................................... TATATTGTTTTGGGTCTATCGTGCTTTTAT 64914 36 100.0 30 .................................... GTTGGACATTGATTAGCCAGACGTTTACTT 64980 36 100.0 30 .................................... GCGGCGATAGCGCCAACTACTAGCATGATA 65046 36 100.0 30 .................................... ATTCGGCAGATGGAAAAATAGATATTGATG 65112 36 100.0 30 .................................... ATGGGATTCCATACGGTTAGGTTATGCGAT 65178 36 100.0 30 .................................... TCGATGTCATAATAGCCTATACAATCAAAC 65244 36 100.0 30 .................................... CTTTGAAGAGTTCCTGAATTTCTGCCTCCT 65310 36 100.0 30 .................................... TCAGAGGTCGCAAAAAGAAGCGATCGACCT 65376 36 100.0 30 .................................... TGACTTAGTTAGAGCCATTGGTAATTACGA 65442 36 100.0 30 .................................... GATGGTTGGGAAATAGTAACGTTGCCTAAC 65508 36 100.0 30 .................................... ACCAACGATGTGATGCAGAAGCAGATAGAA 65574 36 100.0 30 .................................... TGCCTTTCATATGCAAGTTCACGTTCATGT 65640 36 100.0 30 .................................... CTATGCTATCTCCTGTGATTATAGCGGCAG 65706 36 100.0 30 .................................... GTAGAACCAGCATAGACTACTGTAGTTGTT 65772 36 100.0 30 .................................... TCAAGCATGAATTGCTCATTTGTGTAGTAT 65838 36 100.0 30 .................................... TAAAGAAAGCAGACGCCAATCAGTTTTATT 65904 36 100.0 30 .................................... TAATGACATGTTAAAACCGCCTTTCTACAA 65970 36 100.0 30 .................................... GCAATTCCTGAGCGGTCTGAAATGAGCTTG 66036 36 100.0 30 .................................... CTTGAGGGGGAGCGGAGCTGTTTACAGGGA 66102 36 100.0 30 .................................... TTAATCTTGCTCTCATCTGGAAGTGTTACT 66168 36 100.0 30 .................................... AGCTCACACTATGCGAAACTCCAAGAAGTA 66234 36 100.0 30 .................................... AATAAATAAAAGGAGTATAAACCATGAAAA 66300 36 100.0 30 .................................... GGGTCTGATATGCTCTTCTTGTCTTTCGTC 66366 36 100.0 30 .................................... ATCGTTGTTATATAAGACTTTTCAGCCTAT 66432 36 100.0 30 .................................... TAATGAGCGAATGAAGCTGGAGTTTATCCG 66498 36 100.0 30 .................................... TGCTGAAATGTTGCTTGGAACAAAGGACAC 66564 36 100.0 30 .................................... GTCGCTGGAACTTTTCTAACTACCATCGGC 66630 36 100.0 30 .................................... CCATCAGTCAATGGAAATTTAAAGGACAGT 66696 36 100.0 30 .................................... GCTAGATTTGACATTTTATTTCTAACCATA 66762 36 100.0 30 .................................... CGTTCGAGATTGACCCGCTGATACCTTTTG 66828 36 100.0 30 .................................... ACAACATAGCAACTCTACCACATGATGTCT 66894 36 100.0 30 .................................... TTGCCTTGGATAATAGCGTTCCCTTTACCT 66960 36 100.0 30 .................................... TTCGTAGTGATAATGGAAATCCGCTTGTGC 67026 36 100.0 30 .................................... GGGATAAATTAATCGCCGCTGGTTTAGCTA 67092 36 100.0 30 .................................... TTGATTATTTTGAAGCAGACGACGAGGACA 67158 36 100.0 30 .................................... TAAGTTTATCGATATGTTGGGAACCGAGCT 67224 36 100.0 30 .................................... GCCTGGTTCTTGTAGTTACGGCGTACCGCA 67290 36 100.0 30 .................................... CGGTCAGCAATAAGCTGCTGCCAGCCTTTG 67356 36 100.0 29 .................................... CATTCAATCCATACACACACTACTATGAA 67421 36 100.0 30 .................................... TTGCGTTAGCGCTTCAATGTTGGAGATTTT 67487 36 100.0 30 .................................... AGATTCTAAGGATTGAGGAGCCGATTGATT 67553 36 100.0 30 .................................... CTATAATCTGGTTATCAGTTACTACATAAT 67619 36 100.0 30 .................................... CCAGCTTGAAAGCAGATGAACCAACAACCG 67685 36 100.0 30 .................................... AACTTGCAAAAAAGCCCTTTTGTATCGAGT 67751 36 100.0 30 .................................... CATCTTTTGTCTGTGTCGTGATAGCTTCCA 67817 36 100.0 30 .................................... GTATATTTGAGAAAATGGCTCTCGTTAACA 67883 36 100.0 30 .................................... TCCATTCTGTTGCTATCCATAATTGCACAA 67949 36 100.0 30 .................................... TGAGTTAACAACGCACTCATTATTTTATAA 68015 36 100.0 30 .................................... ATTAGTCTTATAGTATCGCTAGTTTCGGCA 68081 36 100.0 30 .................................... TAGTGGAAAAGCTAGAATTGTGTACAGAGA 68147 36 100.0 30 .................................... AACTTGCTTGGCGACCTGCCCTGCATCATC 68213 36 100.0 30 .................................... GTGTCGGTAGTTTTGAAAAACTTAGTAGGG 68279 36 100.0 30 .................................... GTGTGTAGATAATAGAAGAAATATCTGTTA 68345 36 100.0 30 .................................... AACTCATGCTTGAAAATGCCGACTATGTTT 68411 36 100.0 30 .................................... AACTGGAAATGCCACAGTAAACAAAGAAGA 68477 36 100.0 30 .................................... TGCAACTGCCGACCAGACACAACAGGCTCT 68543 36 100.0 30 .................................... TGATGATAAGGCACAACTTCGTACAGACAT 68609 36 100.0 30 .................................... AAATGTACCAGGGTATCGTCGAGGAGACCG 68675 36 100.0 30 .................................... AAATGATTCACTAATTGAGGCGAGGTCATT 68741 36 100.0 30 .................................... GGTATTCTGAGGAATGGTCAAGCTACCATA 68807 36 100.0 30 .................................... CGCATTGTCCACTTGATAGACAATGATTTT 68873 36 100.0 30 .................................... TCATCAAAGACGATGACCATACATGCGATG 68939 36 100.0 30 .................................... TGCCTCCAGGGGCTACACGTCATCATGGTT 69005 36 100.0 30 .................................... GTTTAATGGACAGTGCTTTGCTGGCACATT 69071 36 100.0 30 .................................... AAGTCGCTAGATTCTGCTTGGCAGTATCAG 69137 36 100.0 30 .................................... AATACGGATATTTGTATCTAAAAGACAACA 69203 36 100.0 29 .................................... GCCCTGCGCTCCGTCTGCACCTTTGACTA 69268 36 100.0 30 .................................... TCTAAGGTGTCATTCATTTAAAACCTCTTT 69334 36 100.0 30 .................................... TCTCATGCATGGAGACATGATGTATACATT 69400 36 100.0 30 .................................... AAGTGATATAATTAGAGTACGCAAAAGGTC 69466 36 100.0 30 .................................... TTCGCGTCTTCAAATCCTGCATTCAGTAAT 69532 36 100.0 30 .................................... TAAATTAGCAGCGATTATCTTGCATCAGTT 69598 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 97 36 100.0 30 GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Left flank : GAAAAACCAGAAGTGAAATCAATTATTGAAAAATTAGCAAATTCTATTACTGAACTAATCTCTTATGAATGTCTAGAGAATGAGCTTGATTTGGAGTATGATGAGATTACGGTTTTGGAGTTGATAAAGGCGTTAGGGGTCAAAATTGAAACTATCAGTGATACGATTTTTGATAAAATTTTTGAGATTTTACAAGTTTATCAATTTTTGAATAAGAAGAGATTTCTTGTCTTTATCAATGTGTTATCTTATTTGACGGTGGATGAAATTCAGAAAACTAGGGAGTATATTGAACTTTCCAATATGGATGTTCTTTTTCTAGAACCGAGAAAAAGAAAAGATTTCCCTCAGTATGTTTTGGATAAAGACTATTTCTTACTATCGGAAAATATGGTAAAATAAATACATACAGTACAAATATTAGAAACTATTCGAAACTGAAGTCTGGCTGAGACGAATGGCGCGATTACGAGATTTTGTGACAAAAAATAGTCTACGAG # Right flank : CCGTTAAAAGACAAATTGATAGGGTAGTTAGTTTTAGAGTTGTATTGCTCTAAAAAGTTCTTTTAATTCTTAAAAGCAATGTAGCAAAAATATTTAAGTGTCAAAAAGAAAGGGGATTGTAGATGGATTCAAAATCAATTATTATAACGTCTGGTTATAACAGTAGTAGTGAATATTTTAACTTTAATCATCAAAATAATTGAAAGTAAAAAGTATAGATGAATTTGATTTAAGCTTCATTTTTTTAGGATAAAAACTAGTGCACAGACAAGTAATTCTCTACCATAAACTTTCAAAGTTAAAATGATGATTAACAACATCCAATTTTCCTCCAAGATTTCTAACTGACTCTTGCCCCACCCCCCTTTTCCATGCTATACTAAATATTATCGTTTTACTTCAAAGGAGACAAAGATGACAAACCTAAAAGAGCAGGTTGGGATTAAGGCGGCGGAATTTGTGACCGACGGCATGATTGTTGGACTGGGGACTGGCTCAAC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTGTGCTGTTTCGAATGGTTTCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTGTGCTGTTTCGAATGGTTCCAAAAC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.80,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.27 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //