Array 1 29-301 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROO01000088.1 Cronobacter dublinensis strain cro965W contig88, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 29 29 100.0 32 ............................. AAAAACTCCGTCATAACATCACGCTTCTTGGA 90 29 100.0 32 ............................. ACGTTGCGTAAGGCGCTGGGCCTGCCGGAAAA 151 29 100.0 32 ............................. TTGTCGTCCGTGTATTGCTCCACGGCTGCAAA 212 29 100.0 32 ............................. CATTACCCTGTCATTATTATGGACAGTATCGA 273 29 93.1 0 ..........................A.T | ========== ====== ====== ====== ============================= ================================ ================== 5 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGCGGCTGATGCCCTCGGCCTCAGCCAG # Right flank : TTACTCATTCGCCGTGGCGCAAAAACTTACCTCTGCCAACCCCAGCCCGAATATCCAGCTTAACCACCCGCCAGGGCAACCCCTCCCAAACCCCATATTCTTCAGCGGCGTTTATACTTCAAAGCCAACATGAAATTTCGCAACACTGCGCAACGAAGGAGAGGCTATGCGGGTACACCATCTTAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTATGACGGCTTCAGCAAAGGGTTGCACGCGCATCTGATTTGCCACTGTCTGCTGATTGAAACCCAAAATCACGGACTCGTGCTGGTGGATACCGGCTTCGGCTGCGACGATATGCGCCATCCTGGCCGTCGTTTGCCCCTCTTTTTCCGGGCGCTGAATAATATTCAGTACCGCGAATCATTAACGGCGCTGCATCATATTAAGGCGCTCGGTTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCGGGCGGCATCA # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-14.90,-14.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [10.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 768-10 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROO01000113.1 Cronobacter dublinensis strain cro965W contig113, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 767 29 100.0 32 ............................. CAGGAGCATCCAAACCTTTCGCTGATTCTTGC 706 29 100.0 32 ............................. AAAATGCCGACGGCAGTAACAATCACTATCAG 645 29 100.0 32 ............................. GGTTGAACGGCTTGAGGCTGATAACGAGCCAC 584 29 100.0 32 ............................. AAGTTGGTTTGATGCCGTCTAATACCGGTTTG 523 29 100.0 32 ............................. TGCGTAGGGTTCAAATTGGGGGGGATAACTGA 462 29 100.0 32 ............................. TCACGCAACTTTGGTTTCCCAGGCCTCGTGTC 401 29 100.0 32 ............................. TTACTCTATGAACGGCGGCGAACAAGGACGAA 340 29 100.0 30 ............................. CCAGACATGGCGCGGCCTGGGCTGTTGATA 281 29 100.0 32 ............................. TGGTATCCGCACATCGTCGAATCCATGAACAC 220 29 100.0 32 ............................. ATTCGCATTATCACGTCATCACCCGTTTCGCT 159 29 100.0 30 ............................. CCTGAACCCGTCCGAAAAACGGCAAAACGG 100 29 96.6 32 .....T....................... ATTCTGGCTTTACTGCCAGCGGCCCCGCACGG G [96] 38 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGGCAGCGCTTAAAGGGCAAC # Right flank : GTGCCGGTTT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [6.7-13.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 3537-2959 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROO01000097.1 Cronobacter dublinensis strain cro965W contig97, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3536 29 100.0 32 ............................. TGGTCGACGCCTGCGCGAACGGCGGCACGCTC 3475 29 100.0 32 ............................. TTCATGGAGAGCGTAGAGCCGGGAAGAATTAT 3414 29 100.0 32 ............................. TCCGGCAATATCGAGCTCTATCGAATAAATCT 3353 29 100.0 32 ............................. CTAATTACCCTCGCTGACGCGCTGGCGGGCTA 3292 29 100.0 32 ............................. GACGCGGGTATTTACATAGAGCAAAACAAGAC 3231 29 100.0 32 ............................. CCCCGTTGCACTTGAGCCGGGGTTTTTCTCAT 3170 29 100.0 32 ............................. GCTGCTCTGCCTGTATTCGTGGTAACTGCACC 3109 29 93.1 32 .......T....T................ TGGCCGCGCTTGGCTCGACTATCGGGGCGGCA 3048 29 96.6 32 .....T....................... TTCGACGGGCTATCTGCCGAAGAGGCGGAGCA 2987 29 96.6 0 ............T................ | ========== ====== ====== ====== ============================= ================================ ================== 10 29 98.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GCCCTGTGTGAG # Right flank : GCCATGCATGCATTTATGATGGGCAAATTTGGATAAGCGATTTTCGACAAAAATCGCTCTACCCCGGAGAGAGTTATCGAAAAGCACAACCAGCTTTTAAACTATACAGGCATTACTGAGATGAATAAAAAAACTTTTTACTGGCTATTCCAGCGTTATATTGTTTTTGCGTGTTTGCCGGGGATGACACTCCCGGGCAACAGCCGCAACAGGCCGCGCTCAAATTCAACCAGTGGTATATAAAACACTTCAACGATTCGGATGATAATCTGCTTAACAGTAAAGAAATCGAAATCTACGTGGCGAAAGAGACGCTGGAAACGTTACGTCACGCGAGAAATAACGATGATGAATTTTATGATGCCGACTTTTTTATAAAGGCGCAGGACATTATGCCTGACTGGCCAACACATACGGTTGTAACCGGCGCAGAATACGATCCCGTTTGTACTCAGGTGTACGTCTCATTCGGCCAGCATCAGACGCATGACGTGGTTGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-6.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 1111-45 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROO01000025.1 Cronobacter dublinensis strain cro965W contig25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 1110 29 100.0 32 ............................. CCATCCTGGATATGTGGAACGATATTGCTGTA 1049 29 100.0 32 ............................. CGCGGACTGTATACCAAAACTATCAAATAACG 988 29 100.0 32 ............................. AGTGTGGATTTGTTCATTTTGCTTTCCTTTTC 927 29 100.0 32 ............................. GGCTTATTTGTAAACGCTTTTATTATGCGCAA 866 29 100.0 32 ............................. GTTCGCTATTCGGGCTGTCAGGCGGTCAATAA 805 29 100.0 32 ............................. GGGCTGACGGCTATGCGCTGGGTGCGCGGCGG 744 29 100.0 32 ............................. GAGCGAAATAAAATGCCTGTACAGACTAATTA 683 29 100.0 32 ............................. TTGATTCACTGGTAGTAGTGCGCACCTCAGCA 622 29 100.0 32 ............................. TCACAGCTTCTGATGTTCAAGGATTTACTCAA 561 29 100.0 32 ............................. TTTAGCTTAAGTTTTACACAATCGTAAAAGGG 500 29 100.0 32 ............................. AGAATAACAACAATCCGTTAAGTGAAGAAGAA 439 29 100.0 32 ............................. CTATCTTATGTGTTTATACAGTGATGGTTTCT 378 29 100.0 32 ............................. CATCCCCCTGAATGTGAGCATCGGAATCGAGC 317 29 100.0 32 ............................. AGCCTACTGCAGAGAAAATGCAAGCCGCAGCT 256 29 100.0 32 ............................. CTTGGCATCCCATCATTCCTTATTATCATACT 195 29 100.0 32 ............................. TACCGTCATCGCCGACTGGCTGCTCATTGAAG 134 29 100.0 32 ............................. TTTTCGATGTTACTTGCAGTGCTGGAATGGGG 73 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : ACGAAAGCTTCAAATGGATGATGGCGCACAACATCGCCTTTATTGTCGTCAATATCAACATCAACTATCGCCGTCCTGCGGTGCTTGGCGATGTGCTGACCATCACCAGCGAGATGAAACAGCTCAATGGTAAAAGCGGGGTGCTGAGCCAGGTGATTACGCTGGGGCCCGAAGACGAGGTGGTCGCCGATGCGCTCATCACGTTCGTGTGTGTCGATCTTAAAACCCAGAAAGCGCTGCCGATTGAAGGCGAACTGCGCGAAAAACTGGAAAATATCACAGGGTAAATTCTGCAATCACGCTGCCTGTGCGTGTAGTCATGGACTTCCACTCACCGAAAGCGAACAATCTGGTAGATGTTACCAGCCCGAAAGCACGCTGAAAAAAGGCTTTTAAAATCAACAGGGCAGCCGCTCTTTAACAAGATGGGTTGTGAAGTAAATGTTGGTAGAATGTTGTGGTCGATAAAAGTTTAAAGAAAACAACAGGTTGTTTTTAGA # Right flank : GCTGCCGAGGTAACTTAATAGTCACTAACGGCAGTGTTCCCCGCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 186-6 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROO01000062.1 Cronobacter dublinensis strain cro965W contig62, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =================================== ================== 185 37 100.0 35 ..................................... GACGCCGTCACGGCGTGCGTAACGCTGTGGGATTT 113 37 97.3 34 ..............................G...... AACGCCGTCGCTGCGGGCGAGATGTTGTGAGGGC 42 37 97.3 0 ...........................G......... | ========== ====== ====== ====== ===================================== =================================== ================== 3 37 98.2 35 TGTAGGGTGGGTAAGCGCAGCGCACCCACCATGTTAT # Left flank : GCGCTGAAGATAGCGCAGCGGCTGGAGCAGCATCCGCAGGTGGAGAAGGTGTTTTTCCCGTGGCTGGAAAGCCACCCGCAGCATACGCTGGCGCGCCGCCAGATGGCGCTTCCAGGCGGGATGATTTCGATAGTGGTGCGCGGCGACGAAGCGCGCGCGGCGCAGGTGATTAAAACGCTGCGGCTCTTCACGCTCGCCGAAAGCCTGGGCGGCGTCGAGAGCCTGGTGAGCCAGCCTTTCAGCATGACGCACGCCTCGATTCCGCTTGAACAGCGGCTCGCGAACGGCATCACGCCGCAGTTGATCCGGTTGTCGGTGGGGATCGAGGAAGCAGACGACCTGATTGCCGATCTGGAGCAGGCGCTAGGGGCGTAACGATGCGCGGCGCGGCGGGTGCGCTTCGCTTACCCGCCCTACAGCCGGGCGTAACGCTGTGGGATTTTGTAGGGTGGGTAAGCGCCGCCACCATGTTATACGGCGAACGTGATGTTGTGGGATTT # Right flank : TAACGC # Questionable array : NO Score: 2.58 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTAGGGTGGGTAAGCGCAGCGCACCCACCATGTTAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-15.20,-14.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [3.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.68 Confidence: LOW] # Array family : NA // Array 1 364-32 **** Predicted by CRISPRDetect 2.4 *** >NZ_NROO01000064.1 Cronobacter dublinensis strain cro965W contig64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 363 29 100.0 32 ............................. CGCTGGTATCAGTAGTTTTATTACCCTTACTC 302 29 100.0 32 ............................. CCGCTCTGGACTTTGGCGACAAATGGCAAGAA 241 29 100.0 32 ............................. CACTATCGCAGGTTACCACTCTGGCACGTAAA 180 29 100.0 30 ............................. CCCTGACGCCCTTCCTCAATGGCTTCCAGT 121 29 100.0 32 ............................. GCGCTCAATACGCTCACAGTTACCACCTGTCC 60 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 6 29 100.0 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : GAAGTGCTTTCCGCAGGTGGAATTTCACCTCCTGAGCCCCCCGCAGATGCCCAACCGCCCGCTATTCCACTGGCGGATTCGCTCGCCGAAGCGGGCTTCAGGAGCCGTTAATGAGCATGCTGATGGTTGTCACCGAAAACGTGCCGCCGAGACTGCGCGGGCGGCTCGCCATCTGGCTGCTTGAACTGCGCGCCGGGGTTTATGTCGGCGACGTCTCGAAGCGGGTACGTGAAATGATCTGGCATCAGATAACCGAGCTCGCGGAAGAGGGCAATGTCGTGATGGCCTGGGCTACGAATAATGAATCCGGCTTCGATTTCCAGACGTATGGCGTTAACCGACGCATTCCGGTGGATTTAGACGGCCTGCGCCTTGTCTCATTTTTACCCCTTCAGAATCAGTAGGTTAACAGCTCTTTAAGAATATGGAGATGTAATAAAAAGGTTGGTGGATTGTTGGGTGTGAAAAATTTCCTTATAGAACAGTCATATAGTTTTAGA # Right flank : GATCTCGCAGAAAGGGTAAAAAAAATGGCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //