Array 1 319770-318440 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACTJZ010000001.1 Listeria welshimeri strain FSL W9-0579 NODE_1_length_642719_cov_64.320242, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================== ================== 319769 29 100.0 37 ............................. TATACTTACAGATTCGCCGTTTTTTTCTGGTGTTAAC 319703 29 100.0 34 ............................. CAAATAACGTCAACTGTTCCACGCAACTCTCTCC 319640 29 100.0 34 ............................. TCAAATGAAAATCCCGGCAACTAATAGCAGTCAT 319577 29 100.0 37 ............................. CTGACATAGGTGCAGCGAAAGACCTGCATTCCCATGA 319511 29 100.0 36 ............................. AAAAAAGAACGTATGTGCGAAAGGAGATTAATATGG 319446 29 100.0 35 ............................. CTAGCTGGCTGTGGGCAAAGTGGAACAAATTCATC 319382 29 100.0 36 ............................. ATGTTAAACGATAGCATTACTTACACGATGTATTTA 319317 29 100.0 36 ............................. AGCGTTATTTTGCTTAGCTTGAAAGATTGTTGGTAC 319252 29 100.0 36 ............................. ACGTATATGCCAGCCCTACGGTTTTCAACAAAGACA 319187 29 100.0 38 ............................. TTTGTTATCTTTAAAGGTAACACCCGTATGACCACTTT 319120 29 100.0 36 ............................. TTAGCAGGTGTTACGGCATCTGATAAGCAAGATGGA 319055 29 100.0 37 ............................. TACATTGCTATCAGCCCGGATGTGGTTGAAAGGGAAC 318989 29 100.0 36 ............................. GATGAAAAGAGCGGCAAATGCAAATTCAACTAAAGC 318924 29 100.0 35 ............................. ATAGATCGAATAACGTCATCTGAAATGCTTGTGAT 318860 29 96.6 36 ........C.................... TTGTATTCATTTTATATCCTCTCTTTTCCGATTTTT 318795 29 100.0 34 ............................. AGATTTAACGGCAACATCGAAAAAAATCTTGCTA 318732 29 96.6 35 .........................G... TTCGAAACAATTACTTCTTCTTCCATTTCGCCTCG 318668 29 100.0 42 ............................. CGATTTCAGGAAGTTATGTAGTAGCTTTAGTCAAAGTATCAC 318597 29 96.6 36 ................A............ ATTTTAGGACTCTAAGTAAAAGGAGATTACACTAAT 318532 29 96.6 35 ................A............ GTATTTGTAGAGGAACAACAAAAAGTAATAGACGA 318468 29 82.8 0 AG..............A......C....C | ========== ====== ====== ====== ============================= ========================================== ================== 21 29 98.5 36 GTTTTAACTACTTATTGTGAAATGTAAAT # Left flank : CATTTAAAATTTGGTGGTGAATATATGTATGTAATTTTAATTTATGATATTTCAATCGAAAATGGTGGAGCGAAAGTCTGGAGAAATGTATTTAAGATTTGTAAAAAGTACTTAACTCATGTTCAAAAATCAGTTTTTGAGGGTGAAATAACACCTGCTCTTTTAGTGAAACTAAGAATGGAGTTAGATAAGTATATTCGAGATGACCAAGATTCAGTAATTGTATTTTCTAGTAGACAGCAAAAGTGGCTAGAAAAAGAATTTTGGGGATTAACGGATGAAAAAACTTCTAACTTCTTTTGATGTTCTCAATCTGTCGACCCTTAGTAGTGCGAAAAATAGTAGGGTTCGACAGATTGACGGAGATGACTGGGGGAGAAAGATTTTAAAGGTTTTTAGTGAAAATCCGAAGAAATAAGTTATAATTTTTATGCGATTTTTCAGAGGTCGACAAAAATAGTGCCCTGAGGTATGATGGGAGTAGGAGTAAAAAAGGGCGG # Right flank : TCCTTCCCTAAACAATACACCCCCCAAATAAAAAAATGGACCTCAACCTCAGTCCAAATCTTTTTCAATACTACCTAAACCAACAAAACCGCAACCAACGCCAAAACCGCCGGCAAGCCCTGTTTCACCAAAATTCCCTTAGAAGAAGTCGCACCGCCAAACAGCGCTGCCACAATCACACAACTTAAAAAGAAAATCTGCACAGTTTCAGCCATCTCTGCTCCAGCGAAAAATAATCCCCACACAAGCCCTACCGCAAGAAATCCATTATAAAGCCCTTGATTCGCAAACAGCGTCTGGACTTTCTTATTCGCAAGTAGTTCCTTCTCTACACCGAACGTCCTCGATGCGAGTTTGGTATTTGCGAAAAACATTTCTAAAATCATAATATAAATATGTTCTATCATTACGATGAAAGTTAAAATAAATGCTAAAATGTCCATAAAAAATCCCTCTTTTCTACTTCGAAGTATAGCATGAATTGTAAATTTTTTATGAAA # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAACTACTTATTGTGAAATGTAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:79.31%AT] # Reference repeat match prediction: R [matched GTTTTAACTACTTATTATGAAATGTAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //