Array 1 5719-4895 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKYC01000064.1 Staphylococcus felis strain F24 k127_171, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 5718 36 100.0 29 .................................... AATATTTTCATAGCATCGCTTCTCCTTGA 5653 36 100.0 30 .................................... GACATTCAATCTCTTTTCATACGAAGAGTT 5587 36 100.0 30 .................................... TAACCAGTCACGTTCTTTTCGCCTTTTTGT 5521 36 100.0 30 .................................... ATAAGGCCACGAAACCATTGCACCAACTTT 5455 36 100.0 30 .................................... AGATGCAAGCGAAGCATACACCTTTATTCG 5389 36 100.0 30 .................................... CCATCATTTTTATAATAATACTTTTTACGT 5323 36 97.2 30 ............C....................... ATATTAAAGACATATTGCAGAAAGTGAAAG 5257 36 97.2 29 .........................A.......... AATGGTACTAAAAAGAAAGGGAACGTATT 5192 36 94.4 29 ............C............A.......... TTTGGTTTTTTAACAGAACTGAGCAAGAA 5127 36 97.2 29 .........................A.......... TGAAGAAATCGAACAATTAAAATCTGAAA 5062 36 97.2 30 .........................A.......... TGATCCAGGGAAAGGTAACTTATACACGGC 4996 36 94.4 30 ..............G..........A.......... ATGATGTACGTACCATGTACATTGTCCCCA 4930 36 86.1 0 ........G................T....C.T.C. | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 97.2 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : TA # Right flank : ATTTTTTTCTGAATTTTTAGATATAATGATGATACTGGAATGACCAACTGATAATCAATAATCGAGAAATCTTAATGATACATGTCTTTTCTTTTCATTGATATAATGAAATGATATAGTCAAATATTTTTTAGAGAAGATTGTTTTATTTTATTAAGAAAGGGGAAGTTCGATGAAGTCTATTATTGCAAAACACGCTTTTAAATTGTCAGATGGGAATTTATTTGAAAAAGTGACACGTGAAAAACCAATAGTGAATGCTCATGAAGTAGGAATAGCTGTTCATGCATCAGGTGTGAATCCGATTGATACAAAGACGCGTCAAACACCACTTCAGACTGAAGCACGTGTATTAGGATATGAAGGGACAGGTGTTGTTGAAGCAGTAGGTGAAGATGTGACGCGTTTTAAAGTAGGGGATCGTGTGATGTTTGTCGGTGCACCTAAATGGGAAGGGTCGAATCAAACTTATCAAGTATTAGATGAAGCGTACATGACGC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.77, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : GTTTTAGAACTATGATTATTTAGAAAGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-5.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.91 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 847-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKYC01000038.1 Staphylococcus felis strain F24 k127_95, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 846 36 86.1 29 ..........CGC......A.....A.......... ATAAGCATGTGACTAAGAAAAGAGGAATA 781 36 97.2 29 A................................... GTATGTACGATATTGTTTCAGTGGACAAC 716 36 94.4 30 ..............G..........A.......... TTTTGGTACTGTGTTTAGTCAACAAATTAA 650 36 94.4 30 ........G................A.......... TTGTAGACTGCACTGTAGGTACGTCAGCAC 584 36 100.0 29 .................................... TTTTGAAGATTTACCAGTAAGGACTTTAA 519 36 100.0 29 .................................... GTACCACTAAAGCTTTCGTCTTTCATGTT 454 36 94.4 30 ........G................A.......... AATGCTAATGTTAAAGAAGCAGACCTTACT 388 36 100.0 29 .................................... CCTGACTCTAGACGAATGATACTTAAAGC 323 36 94.4 29 ...................A.....A.......... GGTGCAGTCATATCATCTCGTGAATTAAA 258 36 94.4 30 ............C................A...... TGTCTAACGGAAAAATCAATGAGGATACAA 192 36 97.2 30 .............................T...... GATAATACTCGTCACAACATTAGCGTTACA 126 36 100.0 30 .................................... GGTTACATTGCCTAAATATATGGTTGTGTT 60 36 97.2 0 ..............G..................... | ========== ====== ====== ====== ==================================== ============================== ================== 13 36 96.1 30 GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Left flank : AAGTGAAATTAACAAAAGGAAATTATTTATCAATTTACTTAAAGACGATGATAAAGAAAATGTATTACTTATATTGTACCCAGAAGCATTTTTGGGGCTCAAAGATATTCAAAGATTTATACAATTGATTAAAAGTTATCAACTCACAACCATCATAATTACAAATCATCCATCTATTATCATTGAGGAAGAAAATGTTTATTTATGCAAAAGCAATAAAGAGTGTCACTCAATCAAAGATATAAGGGAAGATCTAGAAATTCTTATGCCACAAGAAACAATTAATGACAAAACGGTTAGAATGATTGCTTATCATGAATTCATAGGTACAGATTTAAAAGAACTAGCACGATATTTTGAGTTTATTAATGATTATAATTAAGATATAATTGAATTTACTATGATAAATTAAAAACAACAAGCTTTATTCAATGTTTAACTTCTTAACTAAAAAGCTAAAACCTCAAAATGGTAAAAACTATAGTGTGTATTTTTGAATT # Right flank : CTTCAGTATTATCGTTACCACCATT # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.49, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 718-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_QKYC01000100.1 Staphylococcus felis strain F24 k127_309, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 717 36 97.2 30 ..............A..................... GGTTACATTGCCTAAATATATGGTTGTGTT 651 36 100.0 30 .................................... TTCAGTATTATCGTTACCACCATTAACACG 585 36 94.4 30 ..............T..........A.......... CGAGAGATGATATGACTCCACCTGCTCTGC 519 36 91.7 30 ........G.....A................G.... TCCATAATCTCCGAATTCTGACACAATACT 453 36 83.3 30 ........GT....A..........AT........T TAGTAATCCTGGGCACGTTGCAATAGTGGT 387 36 100.0 30 .................................... AATGAAAGAGAAAGCATTTTCCCTGAAAGT 321 36 100.0 29 .................................... AGCAGGTCAACAGTTAGTCGTATAATCAA 256 36 94.4 29 ........G.....A..................... CTTCCGAAATTGAATGTTGGTACATGGTT 191 36 91.7 29 ............C.A..........A.......... CATAATTATTTTTGTTGGTGTATACTAAA 126 36 97.2 30 ..............A..................... GGTTACATTGCCTAAATATATGGTTGTGTT 60 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 11 36 95.4 30 GTTTTAGAACTATGGTTATTTAGAAGGAAGTAAAAC # Left flank : | # Right flank : CTTCAGTATTATCGTTACCACCATT # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.61, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAACTATGGTTATTTAGAAGGAAGTAAAAC # Alternate repeat : GTTTTAGAACTATGATTATTTAGAAGGAAGTAAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.22%AT] # Reference repeat match prediction: R [matched GTTTTAGCACTATGTTTATTTAGAAAGAAGTAAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [6-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [26.7-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.68,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //