Array 1 200996-201743 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYOP01000002.1 Photobacterium iliopiscarium strain ATCC 51761 CFSAN065432_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 200996 28 100.0 32 ............................ GTTGTATGCTTATTATTTTCAAGCACCTTATC 201056 28 100.0 32 ............................ AATGGGAAAGTGGAAAAGTGCATCCACGGCGA 201116 28 100.0 32 ............................ CAATCTAATGATTCAATGAAGTAGCGAAATTC 201176 28 100.0 32 ............................ CGAAAATGACGACATTTTTTCAATGCGAGTTT 201236 28 100.0 32 ............................ TGTAGATACGTTTTTTCAGGCACAGTAGACGC 201296 28 100.0 32 ............................ CTCAAATGACTTTCCTTTGATATTTTCCTCAA 201356 28 100.0 32 ............................ AATAAAAGCGCTCTTTCGTGCCCTGATTATAT 201416 28 100.0 32 ............................ ACGGGAACGTATGGATTGACGACACAACGCTA 201476 28 100.0 32 ............................ TTATGGGAATGCACCTCAGCCAAGGACGGCAG 201536 28 100.0 32 ............................ ATGTCAGTGACGTAGCGGAATGGCGACCATGT 201596 28 100.0 32 ............................ AATAACACATAACGTCTTGCCACCGCGCACCT 201656 28 100.0 32 ............................ TACGGTTGAAGTGTGGGCCGTTGTATCTGATG 201716 28 92.9 0 ....................G......G | ========== ====== ====== ====== ============================ ================================ ================== 13 28 99.5 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GGGTTTTCGTTCCTCAAACCAGAAAGTTATTAAAATAACTTTACTTAGATGAGCCTCAAGAATAGAGCAAAGTACATCCCATTCAATTGATTAAGAATAGCGATCAATTAGCCCCACAAGGCAATTGAACGGGCCCCATCGAGGATAACTATAGATATAGTGATTAAATGCACCACAAGCATTTGAGGAAAGTAATAGAACACGCGGTAAGTGCTTTTTGTCATACGACAATTAATATGGTCATACGCTAAACGTTACGGGGTAGCTTTATCGCTACGCGATGGCTTATTAGTAAAGAAGATCGAGAGTTAGACTATATTAATTAGGTAAATAGATGCATTAATTACCCTTTTTTTTATTCATCTATTACTTGATTTAAAAATCAACGACTTACAATTATGAATAAAAAAAGGGGTAAACAAGATTTTTTTATGTTTTATTTACGATAAACAATAAGTTATTATTTACGATAAACAATAAGTTATTATTTATAAGCTCCA # Right flank : GTATTAGATGTTGCTATTGGTAGCGTAATAATTAATGACGTGAGTAAGATATAAACTATCTAAAAAAATTTTAAAATAACCGTTTTTGTGCTTTTTTCTAAATTTTTTCAAAACCGTTAGATTTGCTCTGATAAACATTTTTTGCGCGGTGGCTTAATTTCACAGATTGCAATTAAGGATTTGCACTATTTACTATTATCATTTTGATTATAAACGAGTTTATCAGATTTCGTTGAGTGGTAAAGTTTGCTCTATTGTTTACCAGTAAAAACCTGAAAAAAATTAAACGCCTTATTTATCAAAATCTTAACTTGGCAAGTTCGCCCAGATGCGCTGTAATCAACGCTCCTTAAATGCAATCTGTGCATTTAGTGGGTTTCGGGTTGCTTGCCGTGCGCCCAGTGATGGCGCGGTCTGGGGGCTTGTTTTCGATAAATCCTTAATGGCGAAAAGGTGATCCGAAAACGCGCAAAGTGTGGTGGGGATGAGTGCTTTTTTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [80.0-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 61960-61693 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYOP01000010.1 Photobacterium iliopiscarium strain ATCC 51761 CFSAN065432_10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 61959 28 100.0 32 ............................ AGCTCCGACAAAACCCCCTTCCAATGTAATCC 61899 28 100.0 32 ............................ CTCAGCATACTCAACTAAACCCCTTGCTATGC 61839 28 100.0 32 ............................ AATAACATCATAGCTAAATACGACTTTAAAGC 61779 28 100.0 32 ............................ CATAAGAAACAGTTGAGCAAGCAAGAAGATGA 61719 27 78.6 0 ...........T.T......T..T-..T | ========== ====== ====== ====== ============================ ================================ ================== 5 28 95.7 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : CTACTTCATTAGCTGAGAATAACGGCGTTCCGCCACCACCGCAAAAACCGACTAGCACGCCAGCTTTAGCTAATTCGCGCATTGCGGCCTGAGTAATGGACGTGCCAGTTCCGAGCATTATGGCTGTCGTGTTTGCTATGGGGATATTCCAATATAATGATTGCTTACCTTCGTCGGTGACATATTCAACCCGCCCACCATTCACTAACACGCGACAATGCTGCAAATAATAAAGATTGGCACGTTTAGAATGAATAATCGTTTTTAGCTCACTCGGTGTGAAAGACTTAGCGCACATAGCAATCACCAACAATAAAAAAACGAATTATATACATAATGCGTATAATTCGTTTAGAGTGTAATCACAAATACCCTTTTTTATTTGGCACTTATTCAAACCATATAAAACAACAACTTAAAATATCAGTTTAAAAAAGGGTTTTTAGCGAGGATTTGTGGTTTAGCTTTTATAAGCAATCACTTATACTAATTACGCTTCA # Right flank : TACTTGCTGCTGCCATCGCTTCTTTGATTTCATCTGAGCTATAGCCCTTTGATGACAAATACGCATAGGCTTTACTTTTGTCTTTAAAATTCGACAAATCAAACCGCTTTTTCGCTAACACTAATTGGCAGTTTTCATAAAAATCGACCTCACCCGCTTCCTCTAAATCATAGAAGACTTGCTCAAGATTAGTAATATCAACATGCTTCATTTTAAGCTCTTGCTTGATGACTGTTTTGCCTTTGAGCTTTCTCACCAATTTCAATACTTCGGTTTCAAGATCCGCATTCATGCCTTTAATTTTAGCTTTGCTCAATAGCGTATCGGCGGCATCATGCTCAGAAATTGCTCTTGAAATATATTGAAAGCTGTACCCTCGCTTAGTGAGATCGTTGGTTATTTTCTCTTTGGTGGTTTGACTAAAATCATCATAACTATCTAAACGACTTTTGATCATATCAAGTTCAGACACTTGTTTTTTCTCCATAATATCAATTAAT # Questionable array : NO Score: 5.85 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 70497-70765 **** Predicted by CRISPRDetect 2.4 *** >NZ_PYOP01000010.1 Photobacterium iliopiscarium strain ATCC 51761 CFSAN065432_10, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 70497 28 100.0 32 ............................ ACTCATAGTGGGCGTTTTTGTTTGTCCTCATT 70557 28 100.0 32 ............................ GAAAACGCCAATATCAGAAGCGGCCGACAAAA 70617 28 100.0 32 ............................ ATCACATTGTGACACTGTGCTGATAGGTCATT 70677 28 92.9 32 ........T................C.. CATTCAATGCGATTGGCTTTGAGCTTGTAAAT 70737 28 71.4 0 ...A...A.G.T..T..T..A...T... | T [70761] ========== ====== ====== ====== ============================ ================================ ================== 5 28 92.9 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ACACGCATGTAACGACTATTACAGAAATTCCGAGTGACATCAAAGGTTATCAAACCGTTAAGCGTGTACAGACTAAAAGTGCCAATAATAAGCGTAAGCGTTCAATTGCTAAAGGTTGGATCAGTGCTGATGAAGCGATCCATGCCATTCCTGATACCTCAGAGCGTAAGTTAACATTACCTTATGTTCAAATACAGAGTTTATCTAATCAGAATGTGATGCGAGTATTTATTGAGCACAGCCAAGTTGTGAGTGCTGCAACTGACGGTGTATTTAGTAGCTATGGATTAAGTGCCACCGCAACGATCCCTGTATTTTAAGTGCTGTTTTGATTGTAATAGCAATAATGGGTTAGATGAGTAGTCATTTAACCCTTTTTTTTAGCCGTTATTAGTTGTATTTAAAATCAATGACTTATAATAAGCAGATAAAAAAGGGGTAAAAGAGGGTTTTTAGGGTTTTATTTAAATTAAACAATCGCTTATTATAGTTAAGCTTCA # Right flank : ACAGGAAGGGCATAACGATAACGATAAATTGAATGGAGGGGTGAAGCGGTTAGATTTACATCAAAAGGTTAACCATAAAGTCCACCATTCGCTGGACTTTATGTTGTTAGTTACATGCTGTTTACTGATTATTCTCATGTTCAAATTCGATCCACGCTTTTTCTAATTCAATGAGACTGGCTGTGATTTTAGCTTTGTCTTGTTTTTGAATGATTAATTGTCGAACGTGCTCTTGCTGTATAAAAATATCCTGACGTTTATTGTCTACAAAGTAATTTCTTAATCCTTTTGCCTGATCCATATACTGATGTCCAATATAAAACGGTGTATATCAAAATAGTACATTTATTGTGGTTATTCTCAAGTGTTTGATAGGCTGAATGGATAGTTTATGGGTTTATTTGCTTATGGCGTATCAAGTCTGAAACAGGTTATGCCATTATATAAAGAGGCGGGAATATAATAAATTTTAGGTAATATGACTAATTTACAGATTGAGA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //