Array 1 308758-308364 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSEO01000001.1 Salmonella enterica strain 169_17 NODE_1_length_415883_cov_19.1478_ID_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 308757 29 96.6 32 ...........................G. GCGCTGGAGCTTGAATCAGAGTTGTTGCGTGC 308696 29 96.6 32 ...........................G. CACCGGAAACTTATACCGGCCTGTTCGATGCC 308635 29 100.0 32 ............................. CAATACCGCCTTCCTCTGTGCTCAGGCGGTGC 308574 29 100.0 32 ............................. CCGGATTCTGCAACGACTGCGGCGATGAAATT 308513 29 100.0 31 ............................. AACACAGCGCGGCGTTTACAGTTGCCAAAAA 308453 29 100.0 32 ............................. GTCACGAGGTGATTCACTTGGTACTGGCTGAT 308392 29 69.0 0 ............C.....CT..GTTTGT. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 GTGTTCCCCGCGAGAGCGGGGATAAACCG # Left flank : TGCTGTTCCCGTTCTCGCGTCTGGTGCATATCTGGAGCGTGCCGGTTGAGTATCTGACCCGTAAATATCAGCTTGTTCGCGCACGTCACTGATTGTGTGCTGATTATCTCAAGCCGCCGTGGGGCTGAGGCGTATTCAGCACTATAGCGGGAAAATAGCGCGGGCATGGAGATTGACTTCATGCCCGTTTTTTTGCATTTCCTATCGGGTTCATCCCGTACCTCACGACCTGCCGCAGACGCTCCCTTGAGCTCTTCGCCGACGATATGCGCAAAATCTTACTCCCCCTTGATGTAATGATGTATTAATCCCCGAATTTTCCGCCATACGACACTCGGCATAGTATGTTGGTAGATTTTAAGAGAGAATCATGGGCGTGGTTTTTTATTATATGAAATCAGTTGGTTATATGCTCTTTAATAATGCGGTATTGTTATTTATGTGTTGGTAAGATGTTGCTGTGTGAAAATGTTGTTTATAAACATAGGGATGGCACTAGA # Right flank : GGGTTAGTTCACTCCGGCAGGTTTTTTATGGCTGTTTGCCGGATGGCGGCGTAAATGCCTTATCCGGCACCGATCTTATCTCGGCGTTGCCTATTTTTATAGTGAAGGCATGCCTCAGGATTATCGTCAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTATTCGTCGCTCCGCTCCTCACCCTTCGGGTCGTTGCCTGCGGCAACGCTTTCTCGCTGCGCTCGAATCGAACCTTAGTCGAAGCTTCTCATCCTTCCCCGTACGGAGAGATATGAGGCAGTGTGCTTAACGGGGATAATATACGCGACGGAAGTGATGGTGGTGGGGGAAGGATTCGAACCTTCGAAGTCGATGACGGCAGATTTACAGTCTGCTCCCTTTGGCCGCTCGGGAACCCCACCACGGGGTAATGCTTAATACTGGCCGGCTTCCTTTCGG # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGAGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGAGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [46.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 37856-37279 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSEO01000036.1 Salmonella enterica strain 169_17 NODE_36_length_37900_cov_13.6699_ID_71, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 37855 29 96.6 32 ............C................ CCCCGTTCTGTTATCCGCGCCCGCTGGGCAGT 37794 29 96.6 32 ............C................ ATTTGCACGCCCGCGATAATGCCCCAGAGGCG 37733 29 96.6 32 ............C................ TGGAATTGCGGGTCAATAACAAGACTTATGCG 37672 29 100.0 32 ............................. GCTCGTCGAGGTGATATCAAGGCGGCGTTTCG 37611 29 100.0 32 ............................. AGCGCGAGAACTGGAAGGAGTTGCAGGAGTGG 37550 29 96.6 31 ............................A AAAACTGTTCATGGAAAGCAGAAGATACATT 37490 29 100.0 32 ............................. GGGATGGCGAATTTTGATAGCGAACAGGCTAT 37429 29 100.0 32 ............................. TCAGAGCGCTTTCTGTCGCGATTACGCGAGAA 37368 29 96.6 32 ............C................ TGGAATTGCGGGTCAATAACAAGACTTATGCG 37307 29 93.1 0 ...........................GC | ========== ====== ====== ====== ============================= ================================ ================== 10 29 97.6 32 GTGTTCCCCGCGTCAGCGGGGATAAACCG # Left flank : CGGGGATAAACCGTATTCCCCCTCGTCACCAATAACGCCACTAA # Right flank : TTTTCACCAGCAGATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGTTCAATCCGTCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGACATTCCTGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGACGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAATGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCTGCGTCGCTCATTCG # Questionable array : NO Score: 5.83 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 698-54 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSEO01000013.1 Salmonella enterica strain 169_17 NODE_13_length_125042_cov_17.7794_ID_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 697 29 100.0 32 ............................. ATTTGTGATATGGGGTTAGAGCTGGATGCGAA 636 29 100.0 32 ............................. ATGCCGTATGGCCCCCAGTTGTCACTGGCGGC 575 29 100.0 32 ............................. GCTGTGCTGGGCCAGACGATGACAACCGACGA 514 29 100.0 34 ............................. CGAGGGGCATGTGAATGCTGCAGCGGAAAGTTCG 451 29 100.0 34 ............................. TTGTTCCTGCAATGCGGGCCATTAACGATTCCTC A [436] 387 29 100.0 32 ............................. TAATTAGTTCGTTCCCATTTCCACGAGTCTTT 326 29 100.0 33 ............................. TTTTACCATCTACTGAAGACCAACTATCACGAC C [321] 263 29 100.0 32 ............................. GGAGTTGGCGAGTTTTATTTCACTGATTTGCA 202 29 100.0 30 ............................. GCATCCACGCATTCCTAAACAGAATTATTG 143 29 96.6 31 A............................ CCGTAGTGCTTTTTATGCCTCGCTTCGCTGC G [130] 82 29 96.6 0 ............................T | ========== ====== ====== ====== ============================= ================================== ================== 11 29 99.4 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : TGAAATTAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGTCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGCATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTATCAATCTTACGGACGGCCTGTCGTTGCCGTCTGTGACTCATCTATTACCTTGCATTGTCTATTTTCTCTATACGAATTTCGATGAGTGTATAAAAGCACTGATAAATTTTCCCATAGCGAGGCATGGATCACGCTATTTTGGTAAATTAAAAGAAAAAATTATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTACGTTGGTAGAATGTAGTGCTGATAAAAGTAGTTTATAAACAATGACATACATTTAGA # Right flank : TATGCTAGGTGGGATTAACGATAGGCGAGAAAGTGTTCCCCGCGCTAGCGGGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [38.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 40-311 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSEO01000046.1 Salmonella enterica strain 169_17 NODE_46_length_18224_cov_18.5926_ID_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 40 29 100.0 32 ............................. CACACAGAACGCCAGTTATAATCATCGGTGCT 101 29 100.0 32 ............................. AACGTGCTATGGGGTGTTTTGGGAACGTTTTA 162 29 100.0 32 ............................. TTAAGTCCCCGGCATTCGGCTATGCCTATTCA 223 29 96.6 32 ............................C TGTATGTCGTTAATATGGGGATCGCTGAGGTC 284 28 86.2 0 ....C........C.........-.G... | ========== ====== ====== ====== ============================= ================================ ================== 5 29 96.6 32 GTGTTCCCCGCGCTAGCGGGGATAAACCG # Left flank : AAACCGGACGGCAAAGCCTGGAAACAGTTCAAGCGATTCG # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATAGCCGGTACAAACCTGTAAAGTAAAAAGGCCGCATTTTCCCAGGGAGGCTTTTATACAGGAGAAAGCCATGGCGTTAACGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGACAAATCATTAAGGGCCAAACCAGGATTAAGCCTGTTGGTCCAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTCTGCAAAACGCGTTGGCGATGGGGATCGACTTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCAGATATTGCGCGCGAACGCTATGCGGCAATGGCTTTTCTCGGTATTACCCGAAGAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGGTGTACACGCGTGACCCTCTGCCGATTGG # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.83, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCTAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCTAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 17615-18192 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSEO01000046.1 Salmonella enterica strain 169_17 NODE_46_length_18224_cov_18.5926_ID_91, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 17615 29 100.0 32 ............................. CCTTTCAGGAGCAACAACTGAACGCGCGAGTG 17676 29 100.0 32 ............................. GACGTTTGCGCACCGATCACTTTCTACCTGTT 17737 29 100.0 32 ............................. GGGCGCTACGTCCGGGTGTGATGGCCGTCATT 17798 29 100.0 32 ............................. TGTTGCCAGTGAAATAAATGGTCTGGTTTCAC 17859 29 100.0 32 ............................. CGCCAGCCGGATTGCATCCATACCCAGCTTGC G [17880] 17921 29 100.0 31 ............................. CGGTTCGTCGATTTCTTTCGCTTTTTCGTTA 17981 29 100.0 32 ............................. CGACGCGGGATTTTGTCGGATATTGAAAACAG 18042 29 100.0 32 ............................. TTCTATGGATAACGCCGTAAGCCAGATGGAAG 18103 29 100.0 32 ............................. CACGTCTACTGGCGCGATCTGCATCCTGTGAT 18164 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 10 29 100.0 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAGGATGTGCTCGCGGCAGGTGAAATTCAACCGCCGTTACCTCCAGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTTCTTTGGGGGACTCCGGTCATCGGAGTAACTGACGATGAGTATGCTGGTGGTGGTTACCGAAAATGTTCCTCCGCGCCTGCGAGGAAGGCTGGCCGTCTGGCTACTGGAAATTCGGGCTGGTGTGTATGTTGGTGATGTTTCAGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGAAAACCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTGCCTGTTGCAAATCAATAAGTTAGAGATCTTTAAAAATAAGGAAAAGTTGGTGGATTTTTTGTATGCTAAAAACGGCTTTAAATTCAATTGGGTAGATTTAGA # Right flank : GCGTATCGTCGTCATTATCGTCGCCGTCGTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //