Array 1 100961-100477 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOEE01000012.1 Enterococcus hirae strain MP1-2 MP1_2_contig_12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================================================== ================== 100960 36 100.0 30 .................................... TAATTTGTTTTCTAACTCGTCTCGTCCTTG 100894 36 100.0 30 .................................... TGCAAGAATGTTGTCGTAATAATCAGCTTT 100828 36 97.2 30 ..........................T......... TCAAGCGTTATAGAAAATGGAAAAAGAGGA 100762 36 100.0 30 .................................... GTGGAATTGAGTTAATATGAAATCATCGAT 100696 36 100.0 30 .................................... AGAAATGTCCGCTTTTATTGTGCGGTCGAT 100630 36 94.4 83 ..........................T........T GTAGAAGCGTTGTGCTTTACCCGATCGCTGTTTTAGTTTTGTGTTATTTTGAGTGCTGACCTCATCAACTATGATAAGAGGTA 100511 35 77.8 0 .C.......T................AA.G-..G.T | ========== ====== ====== ====== ==================================== =================================================================================== ================== 7 36 95.6 39 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : CTGAAATCAAGGATTGATCAATTAACCACCAGGGTTCAGGAATGGATTAGTGAGGAACTCTTAGAACATGAATTAGATTTATTCTGTGAAGAAATGAGTATGGTTGAGCTATTCAAAGCATTAAAAATAAGAATTACGTCGCAACCAGAATCAATTTTTCAAAAAATAATGGAGATTTTACAGATTTATAAGTATCTAGTGAAAAAGAAATGCTTGGTTTTTATCAATGTTGGAGCGTACTTAACAATCACAGAAATGGCTGAACTACAGGAATATATTTCTTTGTGTCATATGCCTGTCCTGTTTATCGAACCACGAAAAATAAAAGGATTGAAGCAAACTGTTTTAGATCAAGACTATTTTTTGTGTGAAGAAATGTGGTAAAATAAGAACAATCAAAATAACAAAAAAACAGCATGAATGAGCATTCAAGACGAAAGTTTTGCTATGGACGAGTAGCGCGATTACGAGATTTCGTGAGAAAAAAATTTTTCTGCGAG # Right flank : GCCTACTTTATCATGAAAAGTAGGCTCTTTTTTTACTTATATATAGGAAAGTGTCTTCGGTTGTTGAATCTGCTAAGTTTTGATCATTGAAAGGGGGAATCGTGCCTTTTAAAAATGAATGGGTATGTTTACGGAACAGGACACAATTGTTCAGTCTTATCAACATTGAAACGAATTCATTTTCTCAAAGAAAAGATGAGTTGCTAATTTCGTGCTTTTTCTCTATCATCAAACAGTAGGCATTTGTTCGTGAACTAAAATGAATGTGAGAGGGGACAGTGAGATGTTTGATACAAATTTGATAACTTATTTGGACTGGTTGATCGCAATTTTAAATATTGCTTCAATCATTATTTTGCTGGTAGGGATTTTTTTAGTCTTAAAAAATCTTTTTGACTGGCACCCACTGAAAAAAGACTACGAACAGCGTAATTTCCGAAATGCGGAAGTACGCAAATTATTGGCTAGTTATATTTTGCTGAGTCTAGAGGTGCTAGTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: R [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-2.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 34305-34605 **** Predicted by CRISPRDetect 2.4 *** >NZ_VOEE01000007.1 Enterococcus hirae strain MP1-2 MP1_2_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 34305 36 100.0 31 .................................... TTACCCCATGACATTGTTCTATTGTAGCCCT 34372 36 100.0 30 .................................... AAAGAGTGATCCTGTTGTTCCGATCAACGT 34438 36 100.0 30 .................................... CAGCAATTCAATCAAATCAAGAATGGCGTC 34504 36 97.2 30 .........................A.......... AATCACACACGCACCTAAACCTGAAATACC 34570 36 86.1 0 ..........................T...TG..CT | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 96.7 30 GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Left flank : ATCAAATCGAAGGACGGATTTTTGAAGGACAAAAAATGGTTGTGATCGAAGATTTGATCTCGACAGGCCAAAGCGTTTTAGAAGCAACGGAAGCAGCCAAAAGAGAAGGCGCTAATGTATTAGGTGTAGCAGCGATCTTTACGTATGAACTACCAGCAGGTGAAGAAAATTTTGCCAAAGCAGAGTTACCACTATTTACTCTCACGAATTATTCTGTCTTGATCGAAACAGCGTTAGCCGAAAAATATATTGATGAAGCGGAATTAGCCTTGTTAAAAGAATGGAAAAAGAATCCAGCGGACTGGTTAAAACAGTAACGAAGATACGAAGATGGAACAAAAACAAAAGACTCAAAAAAGGGCTTTCGTTGAACAAAATCCATGGTATACTAGGATCAAACAAAACAACTGAATGAAACAAAGGAAGCATCCAAGGCGAAAGTTTTGCTATGGACGAGTAGCGCGATTACGGAATTTCGTAAGAAAAAAATTTTCTGCAAG # Right flank : TAATAGTTGCTGTACTTCGCTTGTCGTTTTTAAGGCGAGGAGCTTACACAGAGTTGGTTTTGAATCTTATGATTATTTTGATGGAAACTAGAGTTGTTTTTCTGGTTTCTATTTTTTTATAGCAAGAATGGCATGATTCTCATCAAAAAAATTAATTTTTCGTTGATTTACAAACGGGATGTTTGCGAAAGATAGTTATTTAATGATAAAATCATCGGAAAAGTAAAAGGGAGGCTATTTTATGGGATTGAATGAATTTATTTTAGGTTTGAATAATTTGGAAAAAATTACACGAGCGCCAGGGTTCTTTAAATTTACTGAACATACGGTAGCCGCTCATTCTTATCGAGTGGCTTCGATTGCTCAAGTCTTAGGTGACATTGAAGAGGTTCATGGTCAAGCGATCGATTGGAAATTACTTTATGAAAAAGCGTTAAATCATGATTATACAGAACGTTTTATCGGGGATATCAAAACACCGGTCAAGTATGCAAATAAAG # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTGTTTTGAATGCTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.20,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], //