Array 1 209549-208685 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTX01000001.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 17 NODE_1_length_650133_cov_16.7989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 209548 29 100.0 32 ............................. TCACTTTTTGCACACTCAGTGACGACATTGTA 209487 29 100.0 32 ............................. GCAAAAGTCATGGCGTCATTCGGTGCTGATAT 209426 29 100.0 32 ............................. TTTATCGCTCTGGGAGTGGTTATAGCTACTAT 209365 29 100.0 32 ............................. GACAAAGGAGATATCCGGTTAGCGCTTTCACA 209304 29 100.0 32 ............................. CCTGGCGGCACACTCTACCGCCCGTGGTGACA 209243 29 100.0 32 ............................. GCATCGCCTGGCTGAGTCCGTCGCTAACTGCG 209182 28 96.6 32 ..........-.................. ACATCTGGGAGGCGTGGCTAAAACTTACAGCT 209122 29 100.0 32 ............................. GGCGCGCGTGTTGTTGGTGATTCCGCATATCT 209061 29 100.0 32 ............................. CGGGCGCATTGTACGCGATGCAGACCATGCCG 209000 29 100.0 32 ............................. CAGACCGATCCGCGATCATTTTCTGTGGCTGT 208939 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 208836 29 100.0 32 ............................. GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 208775 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 208714 29 93.1 0 A...........T................ | A [208687] ========== ====== ====== ====== ============================= ========================================================================== ================== 14 29 99.3 35 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGTTGCGGAAATGCCGTCATGGCTTGGGCGACCAACACGGAGTCGGGATTTGAGTTTCAGACATGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGGTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:-0.21, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [50.0-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 226822-225818 **** Predicted by CRISPRDetect 2.4 *** >NZ_QDTX01000001.1 Salmonella enterica subsp. enterica serovar Paratyphi B strain 17 NODE_1_length_650133_cov_16.7989, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226821 29 100.0 32 ............................. CCAGAACGATGACGTTGAAGTACCGAAAAATA 226760 29 100.0 32 ............................. TTAATTTTCCCCTGTGGTCGAAACCGTCACAC 226699 29 100.0 32 ............................. CGCCTGTATAGGTGGCGCGGAATGATGGACGA 226638 29 100.0 32 ............................. AGTATTCAACCGGTTAAAGAGGGTCGACATTT 226577 29 100.0 32 ............................. TCATCAACTGAGCAGAGTATCGGCAACTTGTA 226516 29 100.0 32 ............................. TACCTGGTAAGCCGCGGCATTAACGTTCTGCC 226455 29 100.0 32 ............................. CGAAAATGCTTTGTATTGTCCATTGGCACACC 226394 29 100.0 32 ............................. GGCGCGCCTGCGCCCTCTGGGACTCGTGTCAA 226333 29 100.0 32 ............................. CTTTGCGGAGAATACCGATCCGGTGGCTAACC 226272 29 100.0 32 ............................. GCAGGAGAATCGCATCATCGACAACATGGTGA 226211 29 100.0 32 ............................. CCGTGCATTTTTAGCAGATGAGTACCCAACAT 226150 29 100.0 32 ............................. ACGATTATTTGACGCCAGAAGCAGCAGATGCA 226089 29 100.0 32 ............................. ACAATGTTGCGTCTAATTCTCATTAATTAAAA 226028 29 100.0 32 ............................. CGATTCAGATTCGCCATTGTTAATTTTCCCCT 225967 29 96.6 32 .....T....................... CCGTTTCGGCGCAGCCGCTTATTCTTCACTGT 225906 29 100.0 32 ............................. GTCACGAGGTCTGACGCGGATGTGATGAGTTA 225845 28 93.1 0 ........................G-... | ========== ====== ====== ====== ============================= ================================ ================== 17 29 99.4 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCGCGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATTGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGTAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCTATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAACTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTGTCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACTGTCGAGTCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //