Array 1 590055-591097 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034541.1 Brevibacillus sp. SCSIO 07484 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 590055 30 100.0 36 .............................. GCGTCCAAGTCTGGAATAAGCAATGCTCAAATATCG 590121 30 100.0 40 .............................. CTGTTTATCTGTAGTTAATACTGTAGTTAAGGAGTCGCCC 590191 30 100.0 38 .............................. TGCTTGGGGACCTGGCGAGAAGTGGATGAGGGAAAAGG 590259 30 100.0 38 .............................. GGTACGGGTAGAAAACTGGTTGGATCGACAAGTAGAAC 590327 30 100.0 39 .............................. CTTCCCTCGTAAGAAAGTGGGTTAGTGGAGAGTATCCCA 590396 30 100.0 36 .............................. AGATTTGCTGATCATCTTCCCGCCCTGGAACATCGC 590462 30 96.7 35 .................A............ TACTGCTGCCGGATGTTATCGAACCAAGCGTCAAA 590527 30 96.7 38 .................A............ CCTTCATCTCTGACCTCATAACCAACAGAACGCAAAGA 590595 30 100.0 38 .............................. TCACAAGGAGACTTTATTCCGGGCCGAGGCGTAGCTGT 590663 30 100.0 36 .............................. CGCTCTGAATTCTACGCTGCCGCGCAAAGCGGCATG 590729 30 100.0 38 .............................. ATCTATGTATTTGGTCTTACTCATGAGGCATATGTTGA 590797 30 100.0 40 .............................. TCCGCCGGATCCTGACAAGATTATTGCGGAACCGGATCCG 590867 30 100.0 36 .............................. CTTGGCTTGGTTATCCAGCCAGTTCAAAAACTCCAT 590933 30 100.0 36 .............................. CGCTTTCTGACGGCTGGACACTGGCAGCTATGAAAG 590999 30 100.0 39 .............................. AGGTGAGAACATGCTCCGAGACCTGCAGCGCCATTTGGC 591068 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 16 30 99.6 38 GTTTTGATCGTACCTATGAGGAATTGAAAC # Left flank : GCTCCGGCTCTGCCTGTGGACGCAGTGGAAACGAGTCCGTACGCGTTACCGCGAACTTCGTTCGCTTGGTCTTTCCCACAGCAGAGCACGGGAAATTGCAAACACCCGCAAGGGGGCATGGCGGACGACAAAAACTCCGCACATGCACAAAGCCCTTGGCATTGCCTATTGGCAACAACAAGGGCTGATGAGTTTGATACAGCGATATTTCACACTTCGTCAAGCTTGGTGAACCGCCGTATACCGGACGGTACGTACGGTGGTGGGAGAGGACGGGGGTTAGCCGCCCCCTCCTACTCGATTCCCGTTTGTGTCGTCGACCTCCAGTAGTGCAAAAAACCCGGGGGATCGACGACAAAATGAAAATGTGAGAAAACGGAAGATTGGACGAAAAATCGGGCGAAAATGGGGAGAATTCGCTATCGATTGCTCACTGTTTGCTGGGTGTTGAAGGAGTGTGCGGGAAAAGATAGAATGTAGTTGTGACAGCTTCTTTTGGG # Right flank : CCAAGTCCATCACGGCGCTCGCCAAAGTGATGCTAGACTAAAAAGTGGACACCGAGACCATTATTAAAGATAGTTTAATCCGAACGGAGCAAATTCGCGCCATTTCCCGGCATCTCCTAGAGAGGAAGGTCGGGGAGTTATTGCCTGAAGATATGATCAGTTTAGATTTGTTGCTTATTTCTACGTTGCAGTTACAAAAGACGATCAGTCAACTTATTGAGTATGAAGTAGAAAAGCGTTTGTTATCGCGAGCCCGACAAGAAATGGACAGAGGCATGGAGAGATAATGTCCCTCGAGCGAAAATCCACCGAGGGACTTATTACTCCTGATTATCTTTCATCTCAGCTGGATAGACTCCTGTTACCGTTTTCCTCAGCTTGCAATTCCTTTAACGCCCGTTCAAATGAAGTCAATTCTTCCTGAAGATCGGCAAGTTTTTGTTCTAACCTTATTTTAACACGATAGCGTTCTGTAATCTCGGCTTGAAGCATTAGTAGAT # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCGTACCTATGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 2 609173-610485 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034541.1 Brevibacillus sp. SCSIO 07484 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 609173 30 100.0 36 .............................. TTTTTCGCGTATATCTCCGGCCATTTCTTTCCGTAG 609239 30 100.0 38 .............................. TACGAATCGTATTTCCATACTCACATAAACCCCATCGT 609307 30 100.0 40 .............................. TAAAGTAGGTTTTGCCATTCGCTTTCTACGTTCATAGTTA 609377 30 100.0 36 .............................. TATCGTTCATACAAGAAGGTGGTTGCCCACTCAGCA 609443 30 96.7 38 ................T............. AAGGCTTCCTGAAGCTGGTACTTATTCAACTCCCTGAA 609511 30 93.3 38 ................T...A......... TGTCGTGGATGAATATGTGCACGGGACATACATCATCC 609579 30 96.7 38 ................T............. CCCCGAAATTTGGCGCGAAATATCGTCACTGCCGACTG 609647 30 96.7 35 ................T............. TTCTCGATGCCATTTCCCAGGCGATCGGCTTCGCG 609712 30 96.7 36 ................T............. CTTTCGGGGGTTGGAAATCTGCGTCCGGTGTGACGA 609778 30 96.7 38 ................T............. TCCTCTACACCCGACATATCTACACCGCCGCCACCTGT 609846 30 96.7 39 ................T............. TCGTTGCCCCCGCCGAGAGCGACGCCGTTGTGTACGTCG 609915 30 96.7 36 ................T............. AGACTTCATTTATATCGATTTTGGCTCATCAGATTA 609981 30 96.7 37 ................T............. AAGCGTACTGCTACACGCGCAGGGCGTTCCGCGTGTT 610048 30 100.0 39 .............................. ACTGAAATATCAGTAGAATTGGAAGACGTAGAATACCGC 610117 30 100.0 36 .............................. CTGCCTGCGCCAAGTTCCCAACAACGTCTTTCAGGA 610183 30 100.0 38 .............................. TTCGATCACTTTCGGAATATCGTCATATCCGTCTCCGG 610251 30 100.0 37 .............................. CCGCGTTTTTCCCTTTCGTGGTCCATGTGAGGCCCAT 610318 30 100.0 40 .............................. TTGGATTCACCCGGGAAGTAGCCAAGATGGCGACTGCTTT 610388 30 100.0 38 .............................. CGCGGCTGCTTCCTGAGCAGCCAGATATTCAGCGACCG 610456 30 93.3 0 ................C......C...... | ========== ====== ====== ====== ============================== ======================================== ================== 20 30 98.0 38 GTTTTGATCGTACCTAAGAGGAATTGAAAC # Left flank : GAAGCGGCCCATCGATCCAAGATGAACGGCTGAGATGAAAGCCCTTGCAAAGCCGCAAAGACGTTCCCGGACCGCTCCTTCGCCGTGACCAGGGATTCTTTTGCGTGGCCGGGAGGTGGGAGGATTTCTTGCATGGCTTCATGCAAAGAGAGGAAAAGCGACGGGGCCCAATACCAAAATAACGTAAATAGTGTATTTACTATATTCTACATATATCTTCAATACTTTTGGTCTAAGTTGTTTTTGCTGAGATTGGCTTGACAAAGGTCGATCCCGCCGAATGGATGAACTGTCCGAATCCATCAACGGGTTGTCGTCGACCTCCGATCATGCAGAAAACCCGGGAGGTCGACGACAATGAGAAAAAAAGAGTAAACGGAATTGTAAGTGAGGAAACAGAAGAAAATTAGCGAAAATACGTTGTTCCTTTTGTTCCCTGTTTAAGCGTTGAAGGAGTTGGGAGAAAAAGGTAAAATGTGATCGTAACAGCTTTCTTTGGG # Right flank : CACGTCCGGCGGTGCTATCGCTGCCGTTTTTGTACGCGCGTTTTTACCGTACCCATGAGCCATAGCTCGCCTCCTGCCTCAATCCTACCGCCGCGATTCTCCATTACCAGCCCCTGCTTTCACACGGCCATATTAGCCATCTTACATATTAATAGGCACCTTGCGCATCCCGTCGCGCTAGGTGCCTTGATTTTTTCCATATGAAAAATCAATTGAGCGAAACGGGCCACTTCCGCCCGTGTTCCAGCGTTATCCCGCTTGGTCTGGCTCGCTTCCCGTTGTCACGTAGCCCCTTCGGCCTGCCCCGAAACCGAAGGCGGTGGTCAGAGCGGCGACGATGATCAGCGCCAGGAATGGGATGTTCCAATCGCCGCTCACATCGTGCAGCCAGCCCACCAGGGGCGGTCCCGCCGCGGCGAGCAGATAGCCGACCATCTGGCCCATGCCGGACAGTTCGGCGGCCTGCTGCGCATCGCGGGCGCGCAGCGCGAAAAACATCA # Questionable array : NO Score: 8.96 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.80, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCGTACCTAAGAGGAATTGAAAC # Alternate repeat : GTTTTGATCGTACCTATGAGGAATTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.33%AT] # Reference repeat match prediction: F [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.60,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: NA [3-2] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 3 1312029-1311184 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034541.1 Brevibacillus sp. SCSIO 07484 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================== ================== 1312028 30 100.0 37 .............................. TTACGACATCGAGCGCGGGGAACGCAGGTTAAAAACA 1311961 30 100.0 40 .............................. AAAGCATCCCTTTCCTTCCGCAGCCGTTCAGCATCCTTCT 1311891 30 100.0 37 .............................. CAAACCCGATGATAAGCCCAGCGATCACAAGCAAAGA 1311824 30 100.0 40 .............................. TACTTTGAGGTTGAGCCTTGGGTGATTCCTAGTCGGAACG 1311754 30 100.0 39 .............................. TCAGCAAGGTCTTGACGTACCAGGAAGGCCATCTGTTTT 1311685 30 100.0 38 .............................. AATCTGTGATGTGATAGCAGCCACAATGACAGTGGGAG 1311617 30 100.0 36 .............................. CTCATCAGTTGCTCGTATTGATTTTTCTCCAGACCT 1311551 30 100.0 39 .............................. TAGAAATCTCATTGGTGACAAAGACAAACTGGGGTGGGT 1311482 30 100.0 39 .............................. CGCTTAAGGGAGTGCAATTTTTGGCTGAAAACTCAAACG 1311413 30 100.0 38 .............................. GCAATTGTGGCCGTACTTGTGCTGTTCGTTCTGTTCAT 1311345 30 100.0 35 .............................. AGATAGTTTCACCTTTTCCATAACGTTCCCTCCGT 1311280 30 100.0 37 .............................. ACGTGCTCGAAGGCCGCGACTTGACGCCAACACAGCC 1311213 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================== ================== 13 30 100.0 38 GTTTGGATCGTACCTAAGAGGAATTGAAAC # Left flank : AGATCGTGATAGGTCTCCAGCCATGCTTGCAAATCATAAATCCCCCACACCGCAAGCGGTGCTAAATTTTGTAAGCCCAGTACGACTTGGGCAAATGCGTCAGAGCGAATTTCCAAGCAATTTCCAACGGCAATTCTATTAAGCTCGGAGCTGAAAAGCTTAAAACGGAGCTGAAGTTGCTTATGGGCCCTGAGGAAGATTTGGTTATATCCTGCACGAATCGCACACGACAAAATATTCATTCCGTGAAGAGATGGACGGAAGAAAGGAGGAGATTGAGAATATATTGGTATGATCACTCTTTAGCTATGTTTGTCGTCGATCCCCAGTCATGTAGAAAACCCGGGAGGTCGACGACAAAATGAAAATGAAAGAAAACAGAAGCCCTTGCAAGATATTCAACGAGGGGTGGAAATAATCAATTTTTCCTCTTTACCGTATGATTGCTGAAGGAAAAATAAGGGGGTAGCAAGAATGTTATGATAGCAGGCCTTTTTGGG # Right flank : TTGTAGATCTTTTTCACGGCGTTCCAGTCGGCCTGGGTGTTAATATCGTACCTTTGAGGAAAACTCAGTCACAAAAACACTAATCTACCCTCTGAACTCGGGTTTGTATAACTAAGAAGAATTGAAACCGATGTGTTGGATGGCATTTGGAGGGTATATGATTTTCACAAAATCTGAACTCTTATCTATGAGGAATCACGTTGTCAGAGAAGATAACATTATAACAAAAACCCCTGCTTCCGCAAGGGTTCAATTTGTTATGTATGGTGATTCGAACTGGCTTCGAACCAGCGACTTTTGCATCCTGTTCGATTCTTACCAAACATCATGGTTAAGGACAGGTTTCGTCCCCAATTTGTTCCAATACTACGATGGTTTATGTTGCTCCCAATTATCAGGGGAGTCATTTTTCCGCTCACCCATTCTTGGCAATTCCCCTAGCCTTCCGCTCGTTTTCCTCGACAAATTCCAGGTAAATTTCAAGGAATCTGTCCAACTCC # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGGATCGTACCTAAGAGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 4 3390516-3390015 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP034541.1 Brevibacillus sp. SCSIO 07484 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 3390515 30 100.0 36 .............................. CTAAGGTGAAGAAGCCGGCTGCCAGTTCCAGTTACC 3390449 30 100.0 37 .............................. AAGTAGTGATCAACAACATCGGCAGCAAAGCAACCAA 3390382 30 100.0 39 .............................. CGCGCCCAGACAAGGGAACCTGCTGCGCGTCGACGGTCG 3390313 30 100.0 37 .............................. TTGAGTTGGCCGTAGCACAAGATGATCAACTTCAACA 3390246 30 100.0 38 .............................. ACCGGTAACGATTTTGCCATCATCATTTTCATAGCTGC 3390178 30 93.3 38 .................GG........... AATCCGCCATTTAGCCGCCAATTTCCCGCCACGATCAT 3390110 30 90.0 36 .........A.......G...........C CACGGGGGCTGCAGCAAATTGAGCATGTTGTTGCTC 3390044 30 90.0 0 .................G.....A.....C | ========== ====== ====== ====== ============================== ======================================= ================== 8 30 96.7 37 GTTTTGATCGTACCTATAAGGAATTGAAAT # Left flank : ACGGAAGAACTGGCCCGGCACGTGCTGGAGGGGATGCGCGACCGCAAAGCGGTTCTCTTGGCCAACCACGGACTGATCGCCGGCGCGGATACGTTGGCGAGGGCGTTTTACATCGCCGAAGAAGTGGAGTTCTGTGCGGAGGTCTACTACCGGAGCAAATGCATTGGCGAACCCGTGCTGTTATCGCGCGAGGAGATGGAACGGGTGGCGGAGAAAATGCGGTCCTACGCGGTGAATAAGGAGTAGGGATGAGGTGCAGGGAGTCCCCGGCGTGCTCGTGGAGGTAGGGTTAAACTGAATGATCTCTCCGTTGTCGTCGATCTCCAGTAACGCAGAAAACCCGGGGGATCGACGACAAAATGAAAAACGGAGAAAACAGCAGTACGGGATAGATAAGCGAAAGAAAATGGGCGAAAACCCGTTTTCACCTGTGGATGGGTTGGATATTGAAGGATCAAGTGGCAACAAGGTAGAATGTGATTACGACAGGCTTTGTTTGG # Right flank : TTTGTTGTGGACACGAAAAACCGAACAACGATAGCGTTTGCAACCGCCTTATCAAACCAATCGTGTAACCACGGATCCGTTTATGGTTATTCGTACAAATATCAAGCGGTAGCCTGGACCAGTACTAGAAACATGTACGCCCAAACGCACAGAAATTAAAATATATGGGGGATGTTGCTAGGTTGTATAAGTCGGACGCTCTGTTTCACATACAAGACTCCGAACGTCGACTATTAGGAGGTGAACGTAATGCAGCTTAAGCCACTTGGTGTACGAACCCTAATTGTCTCTGTAGCCCTTTTAACTGGCATTGTAGCAGGATCTCTTGGTTCTGGCATTGTATTAGGTCTTGATAAAGGACCTGTACCTGTTCCCGAGTTTCCGAAGAATGAGAATGGCGAGACGTACGGTTCTGGATTGGACGCGACTTCTCCATAAACAGAGCCCGATTTAATTAAGGCATACGGCGCTAAAGCCTATCGCTTGTTTTTACATAATGT # Questionable array : NO Score: 9.10 # Score Detail : 1:0, 2:3, 3:3, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTGATCGTACCTATAAGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: R [matched GTTTTTATCGTACCTATGAGGAATTGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.60] Score: 0/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.41 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], //