Array 1 3641563-3642916 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_CP016440.1 Bordetella pseudohinzii strain HI4681 chromosome, complete genome		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
   3641563	    36	 100.0	    30	....................................	ATGTTTATCGTGATCACGATTTTGTCGTGG	
   3641629	    36	 100.0	    29	....................................	GCGGTGGTTCTGCGCCGATTAACATTAAT 	
   3641694	    36	 100.0	    30	....................................	AGTGATCTTCTTCGTAACATAACGCGCTAC	
   3641760	    36	 100.0	    30	....................................	ACTAGCGTTGTAGTTATGTTGCGTGATTGC	
   3641826	    36	 100.0	    30	....................................	CGCATCGACGGACCGCAGATCAGATCATCG	
   3641892	    36	 100.0	    30	....................................	AAGTCGAAGTACAGCATGTTGAGGGACTAG	
   3641958	    36	 100.0	    29	....................................	GTATGCCGTATTCGATGCGCCCCCAGCAG 	
   3642023	    36	 100.0	    30	....................................	TCTTTCACGTCCTTTCCTTGAGAGAGTCCA	
   3642089	    36	 100.0	    30	....................................	GGTCGTCACGCCTTCCCGACCGCCGCTGTC	
   3642155	    36	 100.0	    30	....................................	AGTGGCGTTTCAGCTGTCATTCCCGTACCT	
   3642221	    36	 100.0	    30	....................................	ATCAGTCGCATGAAGCTGCCGCCGTACTGA	
   3642287	    36	 100.0	    30	....................................	GGGTGAGGGCGTAGAGGGGAATGTTCATGG	
   3642353	    36	 100.0	    30	....................................	TGGAACAAGAAGTGATCGCACCGCCGGAAG	
   3642419	    36	 100.0	    30	....................................	TATTTGGATTGGTGCAAGTTCTATCTGGAA	
   3642485	    36	 100.0	    30	....................................	TTGCCCGTCATGGACGTGACGGCGCCGTCG	
   3642551	    36	 100.0	    30	....................................	ATCCATCCGAATTCACTACGGGCCAAGCTG	
   3642617	    36	 100.0	    30	....................................	ATAGCGATGCAGGGACGGCGCGCGTTGACT	
   3642683	    36	  97.2	    30	......................A.............	GGCCGCTCCAGTACCACTCGTGACGAAACT	
   3642749	    36	 100.0	    30	....................................	TCAGATGCACTGCTACATCCGCCAGTCCGA	
   3642815	    36	 100.0	    30	....................................	CCTACGCGGGTTCGACTCCCGCAGCCCGCT	
   3642881	    36	  91.7	     0	..............................T.A..A	|                             	
==========	======	======	======	====================================	==============================	==================
        21	    36	  99.5	    30	ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC	                              	       

# Left flank :   CGTTGGCCCAGGTCTACCTGGGAGAACGAAAAGACCTCGAACTGCCTCTGCCCGGCCTGCCAATTTCTCTGGCCAATAGCCTGAACGGCGACTGATTTTCGACATGCTTTCGGGATATCGACTAATGTGGATGCTGGTGATGTTCGACCTGCCCGTCCTTGAAAAAGCCGAACGCAAAGCCGCCTCGGCTTTTCGCAATACCCTGCTGGATCTAGGGTTCGAGATGAGCCAGTTCAGTGTTTACCTGCGGTTCTGCACCAGCCAGGCCCAGCTTGACACTTTGTGCAAATCGGTCGAACAATGCCTTCCGGAAGGCGGCAAGGTCCACGTACTCCAATTCACGGATAAACAGTACGAGCGCACGATCACCTATCAAGGAAAATCGCGCCAACCCTCGAAAAAAGCCCCGGATCAGTTCGATCTTTTCTGACAATGAGCACTCTTTTTTTACTCAGAGAATTGAATAACCCCCTGATAAATCAGGGGGTTATGGGAACAAC
# Right flank :  AAAATTGGCAGACTACCCCACACGGCAGAACGTGAACCTCTTAACGCTCCATTAATCCAAGTCCTGGATCCTTGATTGTCATTGTGAGCGCAGGCGGAGTGGATGGGGTTGGATTACCGGTGTTTGTCAGTGTTTCCGGGCGTGTGTCCGTCCTGGGCGGCAAGCCATGCATAGCGTCGGCCCATTTTCCGTCCAGGTGATCGCCGTGGCGCTTGCCGCCGTCCTGGCCTGGCTGGCCGCGCGGCTGCTGTGGCGCAAGGACGGCACGGGCAAGCGCGCCGCCGCCGTGCTGCTCGACGCCCTGCTCATCGGCCTGCTGGCCGCCCGTGCGCTCTATGTGCTGCGCTGGTGGCCGGATTACAGCGCCGCGCCGCGGGCCATCGTGTCCGTCGGCGATGGCGGTTTTTATTGGTGGGCCGGTCTGCCGGCCGGCCTGGCTTATCTGGCCTGGCGCACGCGCGGGCTGCCGCCGCTGCGGCAAGCCGCGCTGGGCAGCGCGG

# Questionable array : NO	 Score: 3.23
# 	Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     ATTCTAGATCACTGGGAATTGCGCTCTAGCCGGAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [9,9] Score: 0.37/0.37
# 	Reference repeat match prediction:         NA 
# 	Secondary Structural analysis prediction:  R [-2.80,-3.20] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-4] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [0.68,0.37   Confidence: LOW] 

# Array family : NA
//