Array 1 17016-18861 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQP01000276.1 Methanosarcina mazei strain 1.H.A.2.8 scaffold29_1_size26077-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 17016 37 100.0 38 ..................................... CTCTCCTATTAGACGGAAACCGCTTTACTGGCGAATAT 17091 37 100.0 36 ..................................... AGTTTTGTATATACCCCTGTTCTGATTTCTGCCCAT 17164 37 100.0 33 ..................................... TTCACTGATTGGAAACATAGAGAAATAAGCTAT 17234 37 100.0 36 ..................................... CTCCATCTCCTGCGGTATCATGGATATAACAGTCAT 17307 37 100.0 37 ..................................... TAATATAGATTGCAGGATCAATAACGCAGCCCGTATC 17381 37 100.0 36 ..................................... GGAGTTTAGGCCAGATCTTGAGAAAGTAAAAGATAC 17454 37 100.0 34 ..................................... ATAAATGAGAGTTTTGGCGGTAAAACCAAAATAT 17525 37 100.0 36 ..................................... AAAACCGCGTAAGCTGTCCCGTTATCAAGCTTAATA 17598 37 100.0 35 ..................................... ATGAAATTGTCATGAATATAGGCATGGTTGCTATC 17670 37 100.0 33 ..................................... ATTATTTCCCTTGTTTACATATACCCCGGGCCC 17740 37 100.0 37 ..................................... TGAAGCCTTCAATCTCGTAATCATCTAGTTTAGTAAT 17814 37 100.0 33 ..................................... ACCTCGTCCTGCATGGCCTTGATAGTCTGCCAT 17884 37 100.0 36 ..................................... AGAAATCAAATCCCGTCGTAACAAAAGACTGGCTCC 17957 37 100.0 35 ..................................... GATGAAGGGGCTCAGGATAGAATAGATCAAGTTGG 18029 37 100.0 36 ..................................... AGTAATGCAACCATTTTCAACAGTCGGAAGCACCAT 18102 37 100.0 37 ..................................... GGAATAATCACTCATTTTATTATATGAGGAAAGTAAG 18176 37 100.0 33 ..................................... CGTTGTTCTGAAGGTATCCCCGCTTAGAGCCAC 18246 37 100.0 36 ..................................... GGAACTGTCGGCACGAATGATGAAAACGACATCTAC 18319 37 100.0 35 ..................................... TCTATCTTTCATGCAAGGCACACAGGAACTCTAAC 18391 37 100.0 35 ..................................... TATGTTCGGGCTTGCTTTTCATGCGAATATACTTT 18463 37 100.0 34 ..................................... CGAAACTCCAGGAATGAGGCCTCAATCCAGGAGC 18534 37 100.0 35 ..................................... TCAAAAGGCCAACTACCCACAAGTAAAAGCAGCAG 18606 37 100.0 38 ..................................... CTGTCGGTTGTTTGCTTCGATTGTCGCATACCCCGATT 18681 37 100.0 33 ..................................... ATTCTGACAGGAGTTACATCTGCCCCCGATACG 18751 37 100.0 37 ..................................... TTTAAAGTAAAACACGAACGCATGAATGCACTAATAG 18825 37 83.8 0 ..T.....T.A.....................A.G.G | ========== ====== ====== ====== ===================================== ====================================== ================== 26 37 99.4 35 ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Left flank : GCATCCTCATTTTAAGTATCAGGTTTCCCGAAGAAAAGCGGTCAGGATGCAGGCAATATTACTACGAAAAGCTATCACAAACGAACTTCCTATGTATTATCCTCTGGTGTTTAAAAGATGAGGCTAGTAGTTACATATGATATAAGCGACAATAAGATTCGTAACAGGGTTTATAGAATCCTTGAAAAATACGGTGCATGGAAACAGTACAGCGTATTCGAACTTGATATTACTGCAGTGCAACGTGTAGAAATGGAAGATGAAATCAAAACAGAAATTGAGTCTACTGATAAAGTACGCATCTATAGCCTTTGTGACCGTTGCGTAAAAAATATTGTAGACATCGGCCAAAAGACTCCAGATAAAAAGTCAAACATTGTTTAACAGCTTTTTACATTGATGTTTATATATTCTCTGTACGCAAGAGGTTTGGGAATTAATGATTATTTTTTGAGGTTTTAGAAAGGGTTATTACGAAAAAAAACCCTTATTTTCATGCC # Right flank : GCCTATCCGAAAAATGTTGTTACCTGTGTAGATGCCCGACATTAATATTTATCGAAACTTCTACAACAGCCAATATATATCCTCAGTGCGGTAAAGAGTCTTAGAGACATCTGGAAGAGAAAAAAGAAGAGCTGGAAAAAGATAAGTCACTCTTTTCCTGATCTTGAGCGTAATAATATCCTGAAAGAAATTGGAAGGTAAAAGACATACAGGAAGAGACCTAAACTGTATTATAGCATAATAAGAAAAGAACTTCTGGCAGGAGGAATAAAAACTATGACAGAAATGACTCTAATCGAAGCACTGAAAAAACTTGCATTAATCACCAAAAAAGGACTGGATGAACTGATTCATATCCCAGGTAATACAAGTGGACCTATTACAATTGGTGAGGCAATTAGAGAAATACAGGATCACGATTCTGACATTTCTGAAACTGATGATTATATAATAGGTAGTGACGGTATTTGGAAAACAGGGGAAGATGGAAGCGAGATAGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATCGCAATCGGTTAGAAAACTCGTTAGAGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.30,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA // Array 1 1020-6305 **** Predicted by CRISPRDetect 2.4 *** >NZ_JJQP01000044.1 Methanosarcina mazei strain 1.H.A.2.8 scaffold63_1_size18350-refined, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 1020 37 100.0 37 ..................................... TAAAAAACCTAATGATATTCATGCCACCACGACACGG 1094 37 100.0 36 ..................................... TAGAATGGGTACTAACAATACTGATAGTTTTCACAC 1167 37 100.0 36 ..................................... TCAGGAAGAGGGGTTCACTCATGCTCCTGTTATTTA 1240 37 100.0 34 ..................................... ACATATTGAGAATATTGTGCTCTCCGTAAATAGT 1311 37 100.0 35 ..................................... TAGACCGACTCTGTTTTCACGACATCCGTGTCAAA 1383 37 100.0 39 ..................................... AACAGTATCGGATACCGTTTTTGTTTACGCTCCAATCGT 1459 37 100.0 37 ..................................... TTTTTAGTAAGTATCATGCTTTCAGGGAACAATTCAA 1533 37 100.0 36 ..................................... TGAGGGGAAAAAAGAGAATATCCAGAGAGCTCAGGA 1606 37 100.0 37 ..................................... AAAAAAAGAAATTAGTGTCCCATCATCTCAATTCTCA 1680 37 100.0 36 ..................................... AATTTGTTGATGAAATCCCAAGAGGAATAACAAAGT 1753 37 100.0 36 ..................................... GCTCTCTTTTTGGGGTCCCTCAAGAAATTCAATACC 1826 37 100.0 35 ..................................... CCCGTTCCTGTACCTGCTTCTATCTCTACACTCTC 1898 37 100.0 35 ..................................... TATACATCTTACACCAACGCGTAAGATAAGTTTTA 1970 37 100.0 36 ..................................... CCAATTCCATTCTCTACACGATCCATGTTTTCAGGT 2043 37 100.0 37 ..................................... TTGACATACAGTTAAATAAGACGTTTAAGTATATTAA 2117 37 100.0 35 ..................................... CCCGATTCATAAAATAATTCATTAATATATATTTC 2189 37 100.0 36 ..................................... AACATTTTATTCCCTCCAAGACAATCCAGCATCGAA 2262 37 100.0 34 ..................................... TAATATGGCAACATTAACACTAACACCAGGCACT 2333 37 100.0 35 ..................................... TAGTATTAAGTACTAGTACTAGTACTTAGAAGAAA 2405 37 100.0 36 ..................................... AATATTTTGTATGCATTTATGTATACAACATGCCAA 2478 37 100.0 36 ..................................... TTGAATATCCAACCACAAACCACACATTCAAATCCC 2551 37 100.0 36 ..................................... ACTTTTTTCTGCGAGGTATGAACATGCCTAAATATC 2624 37 100.0 35 ..................................... AGCGATTCCGCGATTGATTCAAAAGCAGTTAATAA 2696 37 100.0 39 ..................................... CAAGTATAGCAGCCCATCTCGTTTTCTTGAACGCGAATG 2772 37 100.0 35 ..................................... TATACTGCATCCGAGACAATGTTAATAAGTATAGA 2844 37 100.0 36 ..................................... ATCTATACAGAGGTATATTGTGGAACGTTGAGTTTG 2917 37 100.0 35 ..................................... CTGTCCTCAGTCCGTGCCTTCAGGAGGATCCCGGT 2989 37 100.0 37 ..................................... GTTCTTGGGTCACACCCATAGCATGTCTTCTAAGTTT 3063 37 100.0 35 ..................................... GAAACTATACAGAGCGTAATACAGAGAAGGAAGAT 3135 37 100.0 37 ..................................... ATTGTGCTCAAAACATTGTAAGTTTTATTTTCATTTA 3209 37 100.0 35 ..................................... CCCATCCTATAAATCCACAAAGGACATTGAGAAAA 3281 37 100.0 35 ..................................... TAATAAAGTCGCTGCTTTCCGGGCTTGTGCTGCCT 3353 37 100.0 35 ..................................... TATATCATTGAGATATAGTAAGATTAAGTTAAAGT 3425 37 100.0 37 ..................................... TCTTCGATCCAGACCATAAAATCCGAATCTTCTAGTG 3499 37 100.0 35 ..................................... GTTCTGCTTCATGCCCGACCGCATAAATACGAAGT 3571 37 100.0 37 ..................................... TGGAGTGTTTCACCTAAACTCTTCTTACAGAATTGGG 3645 37 100.0 35 ..................................... ATTTCCATCCTGTATTTTGGGAGGAGAATATCACA 3717 37 100.0 38 ..................................... CGCTCAGGAACTCTCTAAAAAGCATAACATGACAATAG 3792 37 100.0 35 ..................................... CTGTGCCAACAACCTGATCTACCCTGTGCGAAGTC 3864 37 100.0 37 ..................................... ATTTATGACGGGGCAACTCCGCTTTTAAGAAATCCAA 3938 37 100.0 42 ..................................... GAAGCTGAATAATTAGCAATTGCTTTTGCTACGCCTGACTTT 4017 37 100.0 37 ..................................... TCTTCAAGGCACAGAACATAATCATTAAAGTCTTCAA 4091 37 100.0 37 ..................................... CAGAATTTTGAGGACCTATTTCTAACACTAGCACCAC 4165 37 100.0 36 ..................................... TTCAGCGATGAATATGGAAAATACAAATTTGACCTT 4238 37 100.0 40 ..................................... CCTACTTTATCACCAGGCTTTCCAACTCCGGCGAGTTCTT 4315 37 100.0 35 ..................................... CACAGGCACCTACCCTTGTCATAGAGTTTCGCCAA 4387 37 100.0 35 ..................................... CATATTTTTGCACCGAGCCAGTAAAAGAAACATTA 4459 37 100.0 36 ..................................... TATAATGTCAAAGAGTATCCTATTTTGTCCTAGAAT 4532 37 100.0 34 ..................................... ACCCTGCTTTCGGGGCTGTAAAACTTGACGGTAT 4603 37 100.0 34 ..................................... TGTAATAGTCGAGTAAACAAACGCATAGGCAAAA 4674 37 100.0 35 ..................................... TGAAAATATAATAACTGCTTCTCCCTCTGGAAATC 4746 37 100.0 35 ..................................... CTTCACGGAGAAAGATAAAGCCCGGTTAATGGAGA 4818 37 100.0 35 ..................................... TCCGAGGTTTTGATATGGTCATGCCGGCAGAATGG 4890 37 100.0 36 ..................................... CTCAAACGCTCATTAAAAGGGCTTCGCTAGATGAAT 4963 37 100.0 36 ..................................... AAAAAGCCGTACATCGTAATGGTGAACTAATAGAGT 5036 37 100.0 38 ..................................... GTTAAACCCATGCTTTTAATAACCTTTTCAGCTTTCTT 5111 37 100.0 35 ..................................... TGTATGTCAATTCGGGAGTTCCGAAACTTGAAATT 5183 37 100.0 35 ..................................... AAAGCTGTGTAATGGTGTATAGTTATGTACTATAG 5255 37 100.0 37 ..................................... TAGGAGTATGCAGCATTAGCGGGTTAAGTGTTGCGGG 5329 37 100.0 34 ..................................... CGTCAACAACGACTCTTGATACGATTATTTTTGA 5400 37 100.0 37 ..................................... TAACTCCTTATGCTCTAATAATCGCAGACGAAACAGT 5474 37 100.0 34 ..................................... TCTTGTATCCTATTTCAGTAGCAATTGCCTTATA 5545 37 100.0 35 ..................................... TTTCAACCCCTCCTTACAGACCATCGTCAGTGATT 5617 37 100.0 35 ..................................... TTTTAAAGTCATCTTCTGGAAAAACACCGACAACT 5689 37 100.0 37 ..................................... ATTCCGTACATGCATTGAGTGCGGTTGGATTATTACT 5763 37 100.0 36 ..................................... CAAACTCAGTCGTTTTAGTGTACTGAGCTTCATAGT 5836 37 100.0 34 ..................................... TAATCGTAACCCTTGCGCCCGTTCATGATCCAGA 5907 37 100.0 35 ..................................... CGTCAATTATTCCCTCCCAATCGACTACAGCAAAA 5979 37 100.0 36 ..................................... ATAAACACTGTTCCGGATCAAATCCTTTTTGATAAA 6052 37 97.3 34 .....C............................... TATCACTGGTCACACTCTTAATATTTGGTGACGT 6123 37 97.3 36 .....C............................... TTATTTTATGTTTTAAATTCCAGATAACAATTCTGA 6196 37 81.1 34 GG...A...T.GCT....................... TTGAATCGTTCGTTCGGTTTTCTGTGATTTAAAA A [6201] 6268 37 81.1 0 .G...A...T.GCT......................G | A [6275] ========== ====== ====== ====== ===================================== ========================================== ================== 73 37 99.4 36 ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Left flank : TCCGAAATTTAAAAATATGTCGCTCGACACGGAGAAATATGGAGAAGGCCTGACTGTTATCCGTTCAGCCCAGTGCCCATACTCAGTAAAAAACGTGGATGCTATTTTGAAAACTGCAAGGGACAAATTGAAAATAAAAGCTAACCTGATTGACCTTGAGAGTTCGGATGAGGCTCAGCATGTGCCCTGTGCTTTCGGAACCTTCTGTATAATTTATAATGGCAGGGTTATCAGCCATCACCCAATCAGTAATACAAGGTTTGAAAACATTATGAAAAAAATAATTCAATAGTCAATACCAGATTTCAAAACCCGTCCACAGATTTAAAAACAAAAGTTTAATAGAAAGAAAAGCATATTTTGAGATGTTTCCAAACCACTAAAAAACCCTTTTTTTCTTGTATTTATAAAGGGTTTGATAATTTTCCAGCAAGAATTTTAGCCCCGAAAAAGGGGATATTTCCCGCCTTTTCTGGCCATATAACGGAAATTTTTGCCCT # Right flank : GTTGTTCTTTGAGTCCCTAAACTTTTTTAAAATTCTTCTAAAAAACAGCACCAGTAACTCTAATTCGGGAAAAAACCGAATTCTTCGCGGCTAAGTATATCAGGATCTGTAGACGACTGAAAATTAATAACCATTTACGGAGGTACCTGATATTCAAAACCAGACTCTAGCCAAAATACAACTGAAACTATACAGCAAAGCGAAGAGAAACCCCGAAAAGAAGTTTAAGAAACTTAAAAAACTGCTTTTGAAAGATGAGGTCCTGCACACAGCCTGGAAGAACCTTAACAGGAACACAAAAAGCACCGGTTTTGATTCCCTCACTATCCAGCAGGTAGAGGCTTCAGGGGTCGACAAATTCATTCGATCCGTAAAGAAGGAGCTTGAAGAAGGCCGGTATACTGCCGATGAAGTAAAAAGAGTCGAAATTCCAAAGAGGAATGGAGAGAAAAGGCAGCTTGGAATTTTAACCCTGAGAGACCGGCTTGTCCAGGGAGCTG # Questionable array : NO Score: 9.23 # Score Detail : 1:0, 2:3, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCGTGAGCAAGATCCACTAAAACAAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:62.16%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.10,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [53.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //