Array 1 272241-272513 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDS01000020.1 Escherichia coli strain 62-L26-A entry20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 272241 29 100.0 32 ............................. AGATTTGTAGAAAAATAGTCATTCTCTGCCTG 272302 29 100.0 32 ............................. CCGGACACTACCGAACGACAGCGGCGGCGGGC 272363 29 100.0 32 ............................. AAACCGGACGAGGGCGCGCTAAAACGTGATTA 272424 29 100.0 32 ............................. CCTCTCAATTTGTAACGTCTGCAATGTCAGGC 272485 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 5 29 99.3 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : TGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGCATTGCGCGTAATTGGCGTTTGTCGATGCAAACACATAAATATCTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATTGTTTGTCGCCTCTGAAAACTCCTCCATTTTACCCATCCAGGGCTAATCATTAGCATTCTCTACAAATTCTGTGGCATTAATTTTTCGCTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCATTTTAATCAATGGATTAAGTGCTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTATAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTACA # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATGTTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.02 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 298216-300746 **** Predicted by CRISPRDetect 2.4 *** >NZ_BIDS01000020.1 Escherichia coli strain 62-L26-A entry20, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 298216 29 96.6 32 ............................T AATGCAGTACGCGCCGGATCCGGTGTTACGTC 298277 29 100.0 32 ............................. CATCCGTTCAAATTCCATCAGATAGCAAACCA 298338 29 100.0 32 ............................. CTGCGCGACCAACGGGAACAGGGCAAATGTGA 298399 29 100.0 32 ............................. TCGCACTCAATTTCGTCAGTGAACGGGAACCC 298460 29 100.0 32 ............................. ACGCCGAAAACGGTTGGTGCGTATAGCGATAT 298521 29 100.0 32 ............................. CTGTTTCTGGTTTTACCTCCGGCAGCATTTCA 298582 29 100.0 32 ............................. AGAGAGTGGTTTGAAGCCGCTCCCAGGGACGA 298643 29 100.0 32 ............................. CGGAACAACAGGTGCAACTCAGGGCACAGGAA 298704 29 100.0 32 ............................. TAATCATTTGGGGCCCCATTAATTAAAAGGAT 298765 29 100.0 32 ............................. GCGCTCACATTTAGCGCCAGAGCCAGGCGGCG 298826 29 100.0 32 ............................. AATTCGGAATCACATTAAAAGGGAACCCGATA 298887 29 100.0 33 ............................. GTTTGAAGGGCGTTTGGAGGAACCCGCGCGTGC 298949 29 100.0 32 ............................. CAAATATATTTTGCGTTAATTATTCGAGGTAA 299010 29 100.0 32 ............................. GCAAAATATTCAATCACCCCACTGGGTAAACC 299071 29 100.0 32 ............................. GAATACCGATTCATAACGGCGGAAATGTGGAT 299132 29 100.0 32 ............................. CCTACGCCATGTGGATTAGTCCGGCGTTTCAT 299193 29 100.0 32 ............................. CAGCTCGCAGCGCTCGGAACGTGGCGCTATAG 299254 29 100.0 32 ............................. GTTTCTCATATTTCGCGTCAATCTCCACCAGG 299315 29 100.0 32 ............................. TGGTTTGAGCCGTTTAAAGTTGAACAGGCGAC 299376 29 100.0 32 ............................. GCTTTCAGTCGAGTGGCAGCTACGAGGAATCG 299437 29 100.0 32 ............................. GACACGGATAACAGCTACCTGCAAAATTTAAT 299498 29 100.0 32 ............................. TTCTCCAATCAGCAGTGCCCATCTGATATGCA 299559 29 100.0 32 ............................. TCAGGGGAATTGCGATATTCAGGCAGCGTAAC 299620 29 100.0 32 ............................. ATCGCTGGTCTGCGAAAACGCGCGCCCGAAGA 299681 29 100.0 32 ............................. ACGAGGTACAGTGGTGCAAAAACAAATTATAG 299742 29 100.0 32 ............................. TTACCGAGCGTCACGAAACAGACAACACCAGG 299803 29 100.0 32 ............................. GCCCAGAATCTCTTTTAGCGCAACGATATTCC 299864 29 100.0 32 ............................. GCTCCGGTTTTAAAATAAACCCGGCAAAAACG 299925 29 100.0 32 ............................. TTAACGCGAAAGCGTCGGCGGTCAGTCGGCAG 299986 29 100.0 32 ............................. GAATATCGGGTGCCAGCCTGGACGCTGGCCGA 300047 29 100.0 32 ............................. ACGCGAATCGGCGGTTTTGAGCGGGTAGCAAA 300108 29 100.0 32 ............................. GCAAACAGCTAACCACCGCCGGGGCGGTTTCC 300169 29 100.0 32 ............................. CGATGATGTAATAATTAGAGCAGAATCCAGTT 300230 29 100.0 32 ............................. CAAAATTTAAAATCATTTAAGCTTGTAAAACC 300291 29 100.0 32 ............................. GGTACACGGATATTCTGTCTAAAAGTTAACTA 300352 29 100.0 32 ............................. ACTGATAACGCCGGAGCCTTCTTTTTCAGCAA 300413 29 100.0 32 ............................. AGGTTGACGTTGATTTTGTTCGTTATGTTGCC 300474 29 100.0 32 ............................. GCGTCTCGAGCGCGGGACGATTCAAAACCAGC 300535 29 100.0 32 ............................. CCAAAGAAGAACAACGAGCCAACTGGTTTCAG 300596 29 100.0 32 ............................. GCAATTTGTTGTCCGCGATCCGGTACGCGCGT 300657 29 100.0 32 ............................. CGGCTATGGAATTTATGGAGAAGTTTGGTTTT 300718 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 42 29 99.9 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTCCTTGCCGCAGGTGAAATTGAACCGCCACAACCTGCGCCGGATATGTTACCGCCAGCCATCCCCGAACCTGAAACGTTGGGCGATAGCGGTCATCGAGGACGCGGCTGATGAGCATGGTCGTGGTTGTTACAGAAAATGTCCCGCCGCGCTTACGTGGACGGCTCGCAATCTGGCTACTGGAAGTGCGTGCCGGTGTGTATGTTGGTGATACATCAAAACGTATTCGGGAGATGATCTGGCAGCAAATTACCCAACTGGCAGGTTGTGGAAATGTGGTCATGGCCTGGGCGACAAATACTGAGTCTGGTTTTGAGTTTCAGACCTGGGGCAAAAACAGACGTATTCCGGTGGATTTGGATGGGTTACGTTTGGTTTCTTTTCTTCCTGTTGATAATCAATAAGTTAGACGTTCTTTAAAAATAAGGAAATGTTTGAATTTAGTTGGTAGATTGTTGATGTGGAATAAATTTGTTTAAAAACAGATATGTATGCTTAGT # Right flank : GGGCGCACTGGATGCGATGATGGATATCACTTAGAATTCCCCGCCCCTGCGGTAGAACTCCCAGCTCCCATTTTCAAACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAACGGTAGCATTATCCGCATAACGTCACGGCAGCGACGTTCTATTCTTCCAGGAAGTGCCTTATCAATATGCTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCGGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAGTTAGTCGCTTCCACCGAAAGTACAGCAATGCCCGCTTTGTCGAATATTTCTGCGTCATTACAACACCCAGTGCCTTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCTATTCCGTGACTGCGCGCAATTGCCAGCGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCGCTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //