Array 1 242961-242601 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894093.1 Actinomadura flavalba DSM 45200 C229DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 242960 30 100.0 35 .............................. TGGTGGACGCCGCGGGCGATGTGGCGGATGAGTCG 242895 30 100.0 37 .............................. TGATCACGCACGCGTAGGTTCCCGGCGCGATGGCCAT 242828 30 100.0 36 .............................. ACGCTCGACGTGCTGGCGCCCGGCCGGGAGGCCGAA 242762 30 100.0 37 .............................. GCAAGGGCGCCGGCGGTCTGTAGCCCGCGCCGCTCGC 242695 30 93.3 35 ...............GA............. GTCATCTTCGCCAGGGTTCGCCCGGCGCCGCTGGC 242630 30 73.3 0 ...............GA......CAA.GTT | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 94.4 36 GTCCCCATCGCCCCTACGAGGGGTCGCAAC # Left flank : GTGCAGGACGATCGCGGGCAGGTAGGTCTGTTCGAACCGGCAGCGCTCGAAGTCGGGGTCCTCCACGTCTTCGGCGGTGATCGTCACCGGGCCGTAGGCGAGCGAGAGGTACTTCCCGTCGTGGACCAGCTCGGTGTCGGCGGCGGTCGCCGGTGTCAGGGACGTGGGGATCTCGGGTGCTTTCGGCTCTCGGAGGGGGCGACCAGTCTGCATGGCGCGACCTTACAAGTCAGTCGCGTGGATGCTGGCTCGTCGGTGATGCTTGTGGCGGACGGGTCGTCGGACTGTCGGGTGCGCGTCGGCGCCTGGGTGGCGCTTCAGGCGAGGCCCCATTGCGGACATGGTGACCCGAAGCCATCCTGACCGGCGTACGCTGAGCACGGACTTGAGCTCCGGATTTCAGCGACACACCGGGGTTTGCGACACGACCGGAGGGTCGCTGAAAACTGCCACGAGAACTTGCGGTTTCGCGGGTGGTTGAGCTGCGACTTTACCGTGGG # Right flank : TTGGGTGGGTGTGGCATGGGGCTTTGTGTGGTGTGGGGTTGTTGGTTTGTGCGTTGAAGGGGGTGCTGGGGGTCTTAGGTGAGTAGGTGGTTCACGACGCGGGTGGTGGCTTGGCCGTCGTCGTGGGGGGCGTAGGTGGTGGCGAAGGTGTGGAGGCGGTGTTTGGAGGAGGTCGCTACGGCGTCTAGGTCGGTTAGGGCTTCGATTAGGTCGTCTCCCTTGGTGTAGAGGGGGCCGGGGGCTTGTTCGGTCAGGTTCAGGGTCAGGCCGCGGACGGACGTCTGGTAGTCGGTGATGTCCGGGGTGTACAGGAGGATCGGGCGGCGTAGGCCCGCGAAGTCGCACATCGCGGATGAGTAGTCGGTGATCAGGGCGTCCGAGGCCGCGTAGAGGGCGGTGATGTCGGGGTGGTCCGAGACGTCTACCAGGAAGCCCGGCAGGGACGGTAGCGGCTCGGTGTTCAGCAGGTGGTGGGAGCGGAGCAGCAGGACGGTGTCGTG # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [10-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [43.3-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 2 522004-521316 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894093.1 Actinomadura flavalba DSM 45200 C229DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 522003 30 100.0 36 .............................. CGGTCGCCCACGATCGGCGCCACGGCGCACCCGCAC 521937 30 100.0 35 .............................. TGGTGGACCAGATCGGGTGGGGCGGTGACGGCGAG 521872 30 100.0 33 .............................. CGTCGCCGCAGTAGAGGGCCTGCTGCGGGGCGA 521809 30 100.0 37 .............................. AGGCCCTCGCCAACGTGCGCCGCGTCGAGATGGCCGG 521742 30 100.0 37 .............................. AGGCCCTCGCCAACGTGCGCCGCGTCGAGATGGCCGG 521675 30 100.0 35 .............................. CGGCGGCGGCCAGCTCACGCACCCGCGCGGCAGCA 521610 30 100.0 34 .............................. GTGCTCGGGCTTTTCACTGACTTGGACCCACCCG 521546 30 93.3 39 ......G..............A........ ATCCCCAGCGGCGCCCGGTAGACCTGCACCTTCACCCGC 521477 30 96.7 35 ....................A......... CGGTCCAGCAGTTCGGCCGCGCGCTCCCGCGTGAG 521412 30 100.0 37 .............................. ACGCCGCAGCGGCCGGACGACGCCGCGCGAACGCCAC 521345 30 86.7 0 ..........TT......G........G.. | ========== ====== ====== ====== ============================== ======================================= ================== 11 30 97.9 36 GTCCCCATCGCCCCTACGAGGGGTCGCAAC # Left flank : GCCGCTGCCTGTGGATAACACTCCTACCGAACTCGGAGGCAGCCCGAACAGGGGCGTCGCGGCTAGGCGCGCTTCTTCGGCTCGCCGCCGGTCTTGGTGTCCCCATCGCCCGTGGTTGCGGTCGGGGCGCGTCGCGCTGGGCGTGCGTGGTGCGGGCGTGAGTCTCGATCGAGGCTGTGGGTCGCGCGATGCGGGCTGGTGGTCTGCTGGGCAGTTGCGGGGTGTTCTCTGCGTTCGTGCTGGGGTCGTGTTGTGGTGGCCTTGCGCGTGGTTGACCGGCGCTGGACCAGGTGGTGTCGGCTGTGTTCTTTGGCCGGGAGTCGGTTCGGTCTGAGGCGTCCGGGTCGCTGCGGAACGCGCCGGGACCGGCGTACGCTGGGTACGGATTTGAGCCTTGGTTTCAGCGACACGCCGGGGTTGACGACACGACCGGAGGCTCGCTGAAGATCTCTTCAAAAACCGGGGGTTAGCGGTTGGCCGACCTGCGGCTTTACTGTGGG # Right flank : GATGGGTGGTTCTCAGCGGGTGACTAGGAACGTTTCGGGGTCGCGTGGGGGGCGGTTGGGGGGTGGGGATGCTGCGTGGCCTATGCCTACTGTGCCCATCGGGTCCCAGTCGGGGGGGAGGGTGAGGGCGTCGCGGACGACGTCTCGGCAGAACATCGTGCTGGAGACCCAGCAGGAGCCGAGGCCCTGGACGGCGAGCTGGACCAGGAGGTTCTGGACGCCCGCGCCGGTGGCGACGACGAACATCTCGCGTTCGGCCGAGGCGCGGCGTTCGTCCGGATAGGGGTGCGAGCCGTCCATGACCAGGCACGGCACGACCAGGTACGGCGCGCGGCGCAGGACGTCGCCGCGGCGCAGGCGCTTGGCGATGGACTCGGCGGAGAAGCCGTCGCGGCGCAGGTCGGCCTCCCACGCGTCGCGCATGGCGTCGAGCAGGCGCACCCGCGACTCGGGGCTCTCCAGCAGGACGAACCGCCACGGCGTCGTGTGGTGCGGGGCGG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 3 1735319-1734690 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894093.1 Actinomadura flavalba DSM 45200 C229DRAFT_scaffold00001.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 1735318 30 100.0 36 .............................. GCCATGGTGCGGCAGATCCACGAGGAGATCCCGCAG 1735252 30 100.0 37 .............................. GGGATCACCTGGGCGCGCACGAGCCACCGGACCCAGA 1735185 30 100.0 34 .............................. CAGCGGTACCGCCGAGCTTCAGCGCGGCGTGGCT 1735121 30 100.0 39 .............................. GCCAGCATGGCGGCAGCGGTGCCCATCACAGCACCTTCC 1735052 30 100.0 36 .............................. CTGGATGTGTTCGGTGACGGGGAGGTCGGGGCGTGG 1734986 30 100.0 36 .............................. TGCTCGACCAGGACCCGGCGCTGGCCGAGCACGACC 1734920 30 96.7 36 ..............C............... ATGGTGATCTTCACCGGGTCGCCTCGCTGTCCTGCT 1734854 30 100.0 39 .............................. ACGTCGCCCCATTTCTGGACCGCCTTCACGGCGGCTGTC 1734785 30 100.0 36 .............................. GCTGATGGAGCCGCTGGACCGCGCCGCCGCGCGCTT 1734719 30 90.0 0 ...........................GCG | ========== ====== ====== ====== ============================== ======================================= ================== 10 30 98.7 37 GTCCCCATCGCCCCTACGAGGGGTCGCAAC # Left flank : TGGCGAACCTGGTAGGCCACGACTCGCCTGTTCTCCACCTGCGCCGAACACAGTCCGATGGCCTCTACGACCGCTACGCCCACCACGTGACCGAACTCTGGAACGGCGGTCGGCCCGAGAACGAAAGGCCGCAGCAGCCGTCCTGATCACGGGCCGCCAACGCGTGCAACAGGCCCATGACCGTCGCCGCGCCGACGGGCACCGTCGAACTGGACCCCCTCGCGTCGTGACCGACCGTTCTCTTGGTCCCCTGTCGACATAACGCAGGCACCAGACACAGCTCGCCTACGCCGACTCAATGCTCGACGTCCACCTCTCGCTAGGCACCAGCCCGTCTGTCCCCCGGGTACACAACCTCTCCCGACCGGCATACGCTGAGCACGGACTTGGACTCAGATTTCAGCGACACGCCGGGGTCCACCGCACCACCGGAGGGTCGCTGAAAACTCCGCCAAGAATCACGCACCTCACGCGCACCTGAACTGTGGCTTTACCGTGGG # Right flank : TGCTGGCGCGGGGATGTGCCGCCTTCCCGCACTGTGAGGGGGTTGTTGGGTTCTGGGGTCGGCCCGGCCCCGGCGGCCCCTGGCGTCGGGGGCGGGTCTCGCGCCCTTCAGGAAGGGGGTTGACCCGTCATAGTACACAAGTTATATATGAGCCATGCCATATAGCGGAGTGGGTCGGGTTGTTGTGCTTGGGGCTGGGGTTGCTGGGTTGATGGCGGCTCGGGTGTTGGCTGAGCACTACGACGAAGTGGTTCTGGTGGATCGGGATGAGTTGCCTGAGCGGGCGGAGCATCGGCGGTTCGTGCCGCAGTCGCATCATGCGCATGGGTTGTTGGCGTCCGGGCGGCAGGTGATGATTCGGCTGTTTCCTGGATTGTCGGCGGAGCTGGACGCGGCCGGGGCGATCACTACCGGGTCGAACGATCCGGAGATGGGGGATCGGTCGATCTTCGTGGTGCGGGGTGGGACCACGATTCGTATTCCTGTTTGGTGGACGGGTG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 18595-18297 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894095.1 Actinomadura flavalba DSM 45200 C229DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 18594 30 100.0 35 .............................. CAGCGGCTGCTGCGGTGCGACGGGTGCGGGCGCCA 18529 30 100.0 39 .............................. GCGTCCACGGCCCACTGCGCGAGCGCGCTCACCTGCCGC 18460 30 100.0 37 .............................. GCTGCTGCCTCGTCCAGGCGCGCGCGGATGTCGCGGT 18393 30 100.0 37 .............................. CGCGCCCGCGACCGGGTGGTCACACGGCGCTTGACCG 18326 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 100.0 37 GTCCCCATCGCCCCTAAGAGGGGTCGCAAC # Left flank : ACGGCCTCGCCGCCAAGGCCGACGACGCGACGCTGAAGAAGACCCTGAAGTCCGAGTCCACCACCCTCCGCGCCGCCGTGACGCCTCTCACAACGGGCGACACCACCCAACTGACCAAGTCCACCGCCGCAACCCCCCGCAACCTCGGCCGAGCCTGCGACTGACCCGCCCCACCACGACCAGCCCGTGTCACACGGCAACACCGGGCAGGCCCCAACCGCGCCGGGCCGCCGCCGGCAGAGCAAGCCCCCGGCGGCGACCACCTCCGCCAGCGGACGGGATCACACCGAGCATCACACCCCGGCACCCGGCGGCCCATTCCTCACATCGCTCTTCGCGCCGATGCTGCGGAACGCACGCAGCCGACGTACTCTGAGCGCGAACCCATGGCCCCGGATTTCAGCGACACGCCGGGACCCACAGCACGACCGGAGGCTCGCTGAAATCCGCCCCCAAAATCCGTGGCATCACGAAGAACTGAGCTGCGGCTTTACCGTGGG # Right flank : AAATGCGGGATCCACAGGCTTTTGTGGGTCCCGGGTGGTGGCCGGGACCCACGGGGGTGGGGTCGGGTCAGCGGTGGAGGTCCAGGTTGGGGACGCCGCCGCCGGGGAAGCCGCCGCCTCCTCCGCCTCCACCGCCACCGCCGCCACCGCCGGGTGGGTCGCCGCCGCCTGGGTTGGGTGGGAGTTCGGGTTCGGTCGGGGGGCGGGGTGGGCTCGGTTCGGATGGGCGGGGCTGGGTCGGGCGGGACGGGGTGGACGGGCGCTGCGGTTCCTGCGGGCGGTACGAGGGCACCGACGGGCGGCCCTGGTAGGGGTCGCCGGTGTAGCCGCCGCCGGGACGCAGGGACGGTGAGCCGAACTCCTTCGGCTCCATGTTCTCGATCGACACCGCCTCGCGCATGTACGAGTTCCAGATCCGCGCGGGGAGCTGCCCGCCGAACACGCTGTAGCCGGGGATCGTCATCGGCTTGCGGTCCTTGTGGAACATCGTCACGCTCGTC # Questionable array : NO Score: 3.06 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCATCGCCCCTAAGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [31.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 2 300279-300637 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894095.1 Actinomadura flavalba DSM 45200 C229DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 300279 30 100.0 37 .............................. TACGTTACCGCCGGAATGCGCCCGCGAGGCGCAACCT 300346 30 100.0 36 .............................. CTCGTGAGGTGTTCGCCCAGGATCGCGTGCGTCTCC 300412 30 100.0 35 .............................. GCGGGGATCGGGCGGACCGGCCGCGCGACCCAGCG 300477 30 100.0 34 .............................. CGCCGTGGGCAGGGCGCATGGCGTGCGGGTCGAT 300541 30 96.7 37 .................A............ AGCTTGGGCGGGGGCCGCGCTGGCGCGGCGCGCACCC 300608 30 93.3 0 ...........................G.T | ========== ====== ====== ====== ============================== ===================================== ================== 6 30 98.3 36 GTCCCCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CCACTCCACGAACCTGTGGACAACTTTCTCACCAGGCTCAGAGACAGCCTGAACAAGGGGGTCGCGCCTAGGCACGCTCGCCCGGCTCGCCACCGGTCTCGGTCGCCCGACCGCCCCTGGGGGGTCGGGCCGTGTCACGCCGGGCGGGCGCGGTGCGGGCGTGAGTCTCGATCGGGCTGTGGGTCGCGCGATGCGGCTGGTGGTCTTCTGGGCGGCGATGGGGTGTTCTCTACGTTCTCGCCGGGTCGTGTTGTGGTGGCCGGGCGCGCGTTTCACCGGCGCTGGACCAGGCCGTGTCGCTGTGTTCTTTCGCCGGGAGTCAGCTCGGTCCGAGGTGTCTGGGGCGCTGCGGAACGCGCTGTAACCGGCGTAGGATGAGCACGGATTTAAGCCTTGGTTTCAGCGACACGCCGGGGTTGGCAACACGACCGGAGGCTCGCTGAAGATCTCTTCGAAAACCCGGGGGTTCACGGTTGGCCGACCTGCGGCTTTACTGTGGG # Right flank : TGCCTGCGCTGCCCGCGATAGGTGACGGGGGCGTGCGCCGCTGCGGGGTTCGCAAGCTCTCTGGGGACCCCCTTGATTCGATTTTCTCGTGTTGGTGTCTCGCGGGTGGGCGGTGGCCGTGGCCTGTGGACAACTCTTCTCGCCGTGTCCGGTGGGGTCGTCGCGTACGGCGGGCGGTTTTTGCGTTCGGCGGGGGGCGTTGTGCTCGGCGGAGGGTCGTTGTGCTCGGCGGGAGGGTTGTTGTGTTCGGTGGGCGATGGCTGGGGCTGGGGGTGTGTTGGTGGTTCGCTGGGGTGGGTCAGGTGAGGAAGCCTCTTAGTAGGGATGCTGTGGCTTCCAGGTGTTCTGTTACGGCTTTGCGGGCGGCTTCTGGGTCGCCCAGGAGGATGGCGTCGAGGATGGCGGCGTGCTGGGTGGCGGCGTGGGCGATGTTGGCGCGGAAGAGGGGGATGGCGTTGAGGAGGTCGGTGACGCGGAGGCGGGCGTCGGCGCAGGTCTCG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCCCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-8.70,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 3 337550-337980 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894095.1 Actinomadura flavalba DSM 45200 C229DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 337550 32 96.9 33 ..........A..................... GTCGCGGTGGTGACGTGGGTGCTGCGGCACCCG T [337552] 337616 32 93.8 34 ..........A..............C...... CGAGCCCGCCCCGTCCGCTCGCCGTCACGGGGAC 337682 32 96.9 35 ................G............... GCCGAGCTGAGGTTCCTGGCCGAGGCCAGCGCCTG 337749 32 96.9 34 .A.............................. GCGGACCCAGCGCGGCGTCTCGCGGACCTCGACC 337815 32 100.0 34 ................................ TCCCACCCGAGCCCGCACGCCTCACCGCGGCGTA 337881 32 100.0 36 ................................ ATGTGCAGACGGTGGCGCGATCCGGCCAGGAGGCCC 337949 32 90.6 0 .C...........................GG. | ========== ====== ====== ====== ================================ ==================================== ================== 7 32 96.4 34 GGGTCCCCATCGCCCCTACGAGGGGTCGCAAC # Left flank : CCAACCTCACCGGCACCACGCTCGGAACCCGCGACTCAAAGAACCCGGACGCCGGCCACCTCACCTTCACCCGCCCGTCCTTCGCCAACCTTCTAGCCACCGTCAAGACAGGCGCCTTAGACCTCCCCTAACCCGAACACCGCGCCACCACCCCACCCACGAACACCTGGATGCCCGACTACAAACCCACCGCGAGACCCAAGACCTCGTCCAGCCAGCCGACGCCCGGCCGCACTCGTCGTCACCACGGAACGCAATGCGCTCACCAGACACGGTCGCCAACGCCAGCCGGGGTTTCCCCGCTAGGACTCCCACCCACCGTCACCCCGACCCCGTCACCCGTGGCCGCTACAAAACCCAACCCAACCGGCGTACTCTGAGCACTGACCGAAGCCCGAGATTTCAGCGACACGCCGGGTTCCACAACACAACCGGAGACCCGCTGAAAACCTCACCAGAAATCTGGGCCTACAAGGGCGGATGAGCTGCGGCTTTACCCT # Right flank : CTCGCCGTCGTCGTTCATCGCCATGATCTTCGTGGCGGGCGGCGACCCGGGCCAGGCACGCACCCACCTGGAGAAGTGTTTGGCCTTCGTCACCGAATGCGTAGGCGTCCAGTGACCGCGGAATCGCTGGCGACACGATGGGCGCCCGCGACTCGATGAACCCGGACGGCCGCCGACTCTCTCACCGCCCGCCCGAGCATGATGGGCTGAGCCATGCCCTCGTCACCGTCGTCCTCCGCACAGGCCGCCCGCGAACTTTTGGGAGCCAAGCTACGAGCCCTCCGTGAAGCTCGCGGGCTGTCCGGCCGCGACTTCGCCGAAGCGGCCGGCTGGAAGTCCCCTCCCTCGTCTCAATGATCGAAAAGGGCCAACGCCCCATCAGCGCCCAGCACATCGAGACCTGGTGCACGATCTGCGCCGCCCCCGAATCCCAGAGAACCCGCCTCATAGCCGAACAAGCAGCCGTAGCAGGCATGTGGATTCCCTACGAAGACCTGAAC # Questionable array : NO Score: 2.64 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GGGTCCCCATCGCCCCTACGAGGGGTCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-8.70,-8.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: F [43.3-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0 Confidence: HIGH] # Array family : NA // Array 4 342762-343181 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894095.1 Actinomadura flavalba DSM 45200 C229DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 342762 29 100.0 35 ............................. CGTGACGAAATTCGTCATCAGAGCAGACATGGCAG 342826 29 100.0 35 ............................. TGGAGATCTGGCGGGGGTCGCGGCGGCTGAGGTGT 342890 29 100.0 36 ............................. CGAGCACGTGCCGCGCGTCGGCGGCCGGTTCGGGTG 342955 29 100.0 35 ............................. TGGAGATCTGGCGGGGGTCGCGGCGGCTGAGGTGT 343019 29 96.6 38 ............................C CGTGACGCAGCAGGTGCGCCACGATGGCGGCCCGGCGT 343086 29 96.6 38 ............................C GCACAGCAGGAGCGCGTGTGGGACCACGCAGAGCAGCT 343153 29 89.7 0 ...A.....G......G............ | ========== ====== ====== ====== ============================= ====================================== ================== 7 29 97.6 36 CCCCATCGCCCCTACGAGGGGTCGCAACA # Left flank : CGAACGGCTCCTGGGCGTCGGTCACCTCCGGCCCGTCCGGCCTCCACACCGTCACCCAGTACGGCGACCGCCGCCTCTGGGACGAGGTCGAATCCGCCTTCACGCAGTGGACCGACACCGGCTCACCCGGCCTCGACCGCTTCGGCCTCCTCATCACCGAGCACGAAACCCGCCTCTGGCTGGACCACCCGCCCCGGAGTTGACCTCCCGCCGGAGTCCGATCTCACCCATCCGATCACCCCACCGGGCAGAGAAGCACACGGTGCCGCGCTCGCCCGGTGTTCGGCCGGGCGCCGTTCCCCAGAGCCTCCCGCTCGGCGTCACCCCAACTCCTCACGCGAGGACACTGCGGAACGGACCCCACCGGCGTAACCTGAGCACTGATCCAAGCCTGGATTTCAGCGACACGCCGGGCTCTGCAACACGACCGGAGGCCCGCTGAAATCCTCGCGAAGAATCTGGACCTGCATGAGCGGATGAGCTGCAGCTTTACCGTGGGG # Right flank : AGCGGCCTGGCTGAACGTTCGAGGTCGCCCGGGTGCTGGTGCGGCCACCGGCGGGCGTGCGGCGGTTGACCGGGGGCGCTCGCGGGCGCCGGGGTGGCTAGTGGACGGCGTTGACCAGGTCGTCTTGGAGCATTGTTAGCCAGTCGTAGGCCGCGTAGAGCGGGAGTAGTGGGTCGCCCGGTGGGGGGAGGGGACGGTCTTCGGTGATGTTCAGGCGGGTGCCCAGGGTCAGGCGGAGGTCGTTGAGGCTGGTGAGCCAGGCCCGGGACTGTTTTTCGTCCAGGACGGTGCGGACGTGGCCTCGGGCGTCGGTGTGGTCGTCCAGGGCGGACAGCACCGTGCGGGCGGCTTCGCGTTTGCCGTCGCGCAGGCCCATCTCGGTGTAGCGGCGGAACTCGTCGGCCGCCTCGCCGTCGCCCTGGTAGGCGTCCGGGAAGAGACGGGCCAGCACCGGGTCGTCCGGGGTCTCGGCCGAGTCGCTGATGCCGAGCGCGGCCAGC # Questionable array : NO Score: 3.14 # Score Detail : 1:0, 2:0, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATCGCCCCTACGAGGGGTCGCAACA # Alternate repeat : CCCCATCGCCCCTACGAGGGGTCGCAACC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 363352-363614 **** Predicted by CRISPRDetect 2.4 *** >NZ_KB894095.1 Actinomadura flavalba DSM 45200 C229DRAFT_scaffold00003.3, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ====================================== ================== 363352 23 78.3 37 .AG..GAA............... GGTGGGCCGCGACCACGACGTCCATGGGAGCCGGGCC 363412 23 100.0 37 ....................... AGCGAACCGAGACCACGACGACGATGGACCTCGAAAG 363472 23 100.0 38 ....................... CGTGGACCGAGCTCACAACGACGATGGACCCTCGGGCC 363533 23 91.3 36 ......A.............A.. CGAGACCGAGACCACGACACCGACGGACGTCGGGCG 363592 23 87.0 0 ..........G...T....A... | ========== ====== ====== ====== ======================= ====================================== ================== 5 23 91.3 37 CGAACAGGCCAACGCAGGCGGCC # Left flank : GAGCGCATCGGCGGCTACGTCGCGGGCCAGTCCACGATCGCGTTCATCGCGGGCGTCGCGTCGTACGTCTTCCTGACGATCCTCGACGTCCCCTACGCCCTGGCGCTGTCCCTCATCGTCGCCGTCACGGCCCTGATCCCGCTCGTCGGCGCGACGATCGGCGCGGCCCTCGTCTGCCTCGTCGTCTTCCTGTCCGGCTCCCTCTACGAGGGCATCGCGGCCATCATCTTCTACGTCGTCTACCAGCAGGTCGAGAACTACCTCCTCTACCCCCGCGTCATGAAGCGCACGGTGGACGTGGCCCCGGCCGTGACCATCGTCGCGGCCCTGGTGGGCGGCACCCTCCTGGGCGTCGTCGGCGCCCTCCTGGCCATCCCCACGGCCGCGGCCATCGCCCTGATCATCCGAGAGGTCGTCCTCCCCCGCCAAGAAACCATGTGACCGACACCCGCACGACGACACGAACCTGCGAGCGCGCACCCGGTGACCGCACATGCGAG # Right flank : CCGAGACCGAGACGACGACGTCGATGAGCGTCGCGCGCGGCCGATCCGGCGTCCAGGGACCAGGGCGGCGGTGAACTCGACAACGGCCTGGTTGAAATGGTCGCGCTGTTCGACCGGGACGAAGTGACCGGAGCGTGGGACGGTCCGGACGATTCGGCGGCTAAGGGCCCAGGGCGGCGGTGAACTCGGCGACGGTCTGGTTGAAGAGGTCGGGCTGTTCGACCGGGGTGAGGTGGCCCGAGCGCGGGATGGTCTGGAGTTCGGCGTTCGGGAGGGCGTCGGCGATGGCGCGGGCCTCGTCCTCGGTCGCGAGGGCGTCCTCGTCGCCGTGCAGGATCAGGGCGGGCACCTTCACGTCGCGCAGGGTCGCGAACGCGTCGGATCGGACGGCCATCGCGCGCTGCGCCCAGGCCGCCGCCGCCGGCGGGGTCGCCTGGACGAGACCGCGGACGCGACCGTAGACGAGGGCGCGCTGGCGCATCGTCGTCGAGCCGACGAGT # Questionable array : NO Score: 2.54 # Score Detail : 1:0, 2:0, 3:0, 4:0.56, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGAACAGGCCAACGCAGGCGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.50,-1.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //