Array 1 360305-362852 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFIQZ010000003.1 Listeria monocytogenes strain CDHLST contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 360305 36 100.0 30 .................................... GGCGATTCTGTTGAAACTGCAACGAAACTT 360371 36 100.0 30 .................................... CCACGTCAGACCAAGAACTTAAAACTATGC 360437 36 100.0 30 .................................... CTAAATTCATGTTGCGGGATGTTGTGGATG 360503 36 100.0 30 .................................... GAACTTCTTCACCATCCTTCATTTCTGTTT 360569 36 100.0 30 .................................... TCAGACTTCTATATCCACAATAAAAGCCCT 360635 36 100.0 30 .................................... GCGAGTCAATTCATCAAACCCAATCAGAAA 360701 36 100.0 30 .................................... GTGTACACGATAGTCCAAGTCGGTATTTCC 360767 36 100.0 31 .................................... CTCACGTTGTCAAGGTCAAATTTTAGATATG 360834 36 100.0 30 .................................... GAGGTTCGTGGGGGTAATCCCGGCTTGCGA 360900 36 100.0 30 .................................... AGAGGCAACGAGACTACAGACGCACTTAGA 360966 36 100.0 30 .................................... TTTGGTCGAATTCTTCCGCATCTTTAAACT 361032 36 100.0 30 .................................... TTAATGAAGAACTAGAAACAATTGAAAACA 361098 36 100.0 30 .................................... GCACGTATGATCGTCTTCTTTGATGACCTC 361164 36 100.0 30 .................................... TACTCGTATAAAAATCAAGAGAGACGTATT 361230 36 100.0 30 .................................... CTTCCGCGTTACATGTTTGACATCAAGTAA 361296 36 100.0 30 .................................... GGTTGTGCCGTCACCCGTTGGTGGTAGGCT 361362 36 100.0 30 .................................... TTTTCTTTTTCACGATGCGATCGAACGTTT 361428 36 100.0 30 .................................... AGTGCAATATTTAGCGTACACATCTTTTAC 361494 36 100.0 30 .................................... TTGGTCAATAGATGACTGTATTTCTTGCTC 361560 36 100.0 30 .................................... TGAAACACACAACATTTCAGAATGGCTTAG 361626 36 100.0 30 .................................... ACTTACTGAACAACATTGATTACCACAGTT 361692 36 100.0 30 .................................... TAATAAACAAGAAATATTACTTCATGAATC 361758 36 100.0 30 .................................... CACTATCCACTACAGTGATTTGTATTGTGC 361824 36 100.0 30 .................................... GTAATCCCAATTAACCCCGCAGAGGGTGTA 361890 36 100.0 30 .................................... TGTCATGGCGAAAGGTAAAACGGTCGATTG 361956 36 100.0 30 .................................... AGTGTTGGAGACTGCAAGGATTTCCGGATT 362022 36 100.0 30 .................................... AACCTGCAGGTGCTGTGTTCACGTCAGCAA 362088 36 100.0 30 .................................... TGTTGTCAAAGATGGTAATAAATGGGTGAC 362154 36 100.0 30 .................................... CATCGAATTGATACTTTTCGAGTGAAGCAA 362220 36 100.0 30 .................................... GTGGGAAACGTTAAATATTATAAAACAGAT 362286 36 100.0 30 .................................... GCATCGTACCCCAGTTCATGAAGCGCGGTA 362352 36 100.0 30 .................................... ACAAAACTCTCTAATTCAATTGCTCCATCA 362418 36 100.0 30 .................................... TTTATAAAGAATACTTGCGGGGCATAAATG 362484 36 100.0 30 .................................... GTCTAAACTTGGAATATAACTTAGGTCTTG 362550 36 100.0 30 .................................... ACTGATGAAAGTATTTCTCCAATGACAAGT 362616 36 100.0 30 .................................... TTAAATACGATGGAATTAATCTATCGATGC 362682 36 100.0 30 .................................... TCAAAGAGTTTATACCTGTTTTGATTGAGT 362748 36 100.0 30 .................................... TAATATTCTTCCCCCCCATCGCTAACAGGG 362814 36 86.1 0 .............A.....C.....T.A.......G | A,A,C [362839,362845,362848] ========== ====== ====== ====== ==================================== =============================== ================== 39 36 99.6 30 GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Left flank : GACAAATTAACCGCGACGATTAGCGAGTTGATAGGTTACGAATTATTGGAGCATGAACTGGATTTAGAAGAAGATGAAATAACGGTCATTGAATTATTCAAAGCTTTAGGAATAAAAATAGAAACAAAAAGCGATACCGTATTTGAGAAGTTAATTGAAATAGTACAAGTCTATAAATATCTATCTAAAAAGAAATTGTTAGTACTTATTAACGTGTGTTCCTATCTTACAGAGGAAGAACTGCTAGAGTTGAGACGGTATATCACTTTATATCAAGTCAAAGTACTATTTATTGAACCTAGAAAAATAAAAGGATCTCCGCAAGTTACTTTAGATTCTGATTATTTTTTACATGTGGAAAATAGTGTATAAGGTAACTGCTGTTCTTTGAAAACAAAATAAATTTTATGTAAACCATAAAATAGCATTCAAAATTGAAATCTTGCTATGGATGAATGGCGCGATTACGGAATCTTGGAGGAAAGAAAAAATTCTGCGAG # Right flank : GATAAAATGCATCGCAATTACCAAACCATGGTTAAATTTAAAAAGGAGTTAGGCTATCTATATGACACAGTATCACTATCTTGCTTCGAAGTCACTCTTAGAAAATGATGGGGAAAAGTTCCCTCGTCTTTATATTAGACTTCTTAAATTTGAATTTTGATATGAATGTTGACCAAGACACTAATGAATTGTTTTTCTATTCAATTGATTTGAACTCAGCTTGTAAATCTAAGTAAAGGGAACCTGCCGCTGAAAGGTAATGGGCAAAAAAATTGTTACGAGACTAAAAGTTTAAAAATCTTGTATGATTATATTCTAAATACGAGTAAAGATAATGACACGCTTGAACTATATACTGCTTGGAAAAGCGAGGAAGATTTCCTGCTATTGAATAAAACAGAACTGCTGATCTAGAATTTAACTATCGAAAATCTAATTTTAAATGATAGAGAACTATTAGTAATTAAAAAAGAAAACCGATATAACTTTTAGCACCATTC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGTTATTTTGAATGCTACCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.30,-0.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //