Array 1 5498-7586 **** Predicted by CRISPRDetect 2.4 *** >NZ_QZIB01000072.1 Moraxella catarrhalis strain COPD_M4 NODE_72_length_8337_cov_10.123, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ==================================================== ================== 5498 28 100.0 32 ............................ CAAACGGTGGGGTCTCATACCTCATCAATCCG 5558 28 100.0 32 ............................ AGTCGTCGAAGCGTGGCTTGTCGCTGTCGGTA 5618 28 100.0 32 ............................ AATTGCCAATCTTGGCACAATTGAAAGCAACA 5678 28 100.0 6 ............................ TGATTT Deletion [5712] 5712 26 92.9 0 ..........................-- - Deletion [5736] 5738 28 100.0 32 ............................ TTGCTAAGCCGATGCCTGATACAATGCCGCCA 5798 28 100.0 32 ............................ TGCCCCTGCAGCGATTAGCCCAGCATTGCCTA 5858 28 100.0 33 ............................ CGCAAAATCAGACACGCCATTATTACTTGCTAA 5919 28 100.0 32 ............................ GTAATCAGAAGGCGGTGGTCTGCCCCCTCCAT 5979 28 100.0 32 ............................ AGTTTACGAGCGTATTCAAGAGCTTTCTAAGC 6039 28 96.4 32 ...T........................ TTTCATGACCTGCGTAGAACTGCACGCACCAA 6099 28 100.0 32 ............................ GTATTTCGTGTTTGCCTCTCCAAAAATTGAGC 6159 28 100.0 32 ............................ AATGCTGATACTACCGCCTCGGATGTTGGGGG 6219 28 100.0 32 ............................ ACTCACTACAAAAATACTTCGCTTTATGCTGT 6279 28 100.0 32 ............................ ATAGCCCGCTAAAGTCGTTGGCTTATTGGTAA 6339 28 100.0 32 ............................ TGTTCTGATGCGTCTTGACAGCGCTTGCTCTT 6399 28 100.0 32 ............................ ACACAGACATGCGATTGGTGATATTACTAATT 6459 28 100.0 32 ............................ CATACTTTACGGTGAGCGAGAAATTGGTGGTT 6519 28 100.0 32 ............................ TTAAAATCTACGCCATCCAAATGCTCAATGAA 6579 28 100.0 32 ............................ ACGCTCTAGCTTGATCTTATCAATGCGACTTT 6639 28 100.0 52 ............................ CCGCACAGGTCGCTTAGAAATGTCCAATCGCTTGTATTGCCTAGCTTATCCA 6719 28 100.0 32 ............................ GCTGATGTTGCTTTCAATCGTGCCAATTTTGC 6779 28 100.0 32 ............................ ACAGGGAGATTATCGCAAAAATACAGCCAAAT 6839 28 100.0 32 ............................ AATATAAGTTATCATCAACTGTGTGTAGCTTT 6899 28 100.0 32 ............................ ATCAACGCCAAGCTGGCGGACGGTGTTGATGT 6959 28 100.0 32 ............................ AGACTGCCCTAGGATGAATGCACCTATTGCCA 7019 28 100.0 32 ............................ CAGTCTTGATATCGAACGGTACAGCATATCGC 7079 28 100.0 32 ............................ TCTCCAGTTGGCAACGAAAATCCATTTTTCTC 7139 28 100.0 32 ............................ GCAATGAAACACGCACGCTGACAGACGCTAAC 7199 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 7259 28 100.0 32 ............................ TTACACGCTACTGACCTACATTTGGGTAGGAC 7319 28 100.0 32 ............................ AGTTTCAAAATATCAACTTCCCCTAGTAGCTT 7379 28 100.0 32 ............................ ATAATTAACAGTTGCACAACCAATCTTAAAGA 7439 28 100.0 32 ............................ ATTGGGAATTATTAAGAGTTTGATCAACAGTA 7499 28 100.0 32 ............................ ATTGACTGAATTTACCGCAGTTTCAATCGTTG 7559 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ==================================================== ================== 36 28 99.7 31 CTTCACGACCGCACAGGTCGCTTAGAAA # Left flank : TGCCTGTGCCAAGTAAAATGACCGTCGTGTTGGCGATCGGAATATTATAATAGTGGTTTTGGTATTTCGTTTCGGTCAGGTATAAGATACGCCCATCTTTTTGCATGACTCGGCAATGCTCAAGATAAAATAAATTCGCCCGTTTGGAGTGTAAAATTGCTTTCAAATCGGTCGGTTTGAGCGTATTCATAATAATACAAATCCATGTTTAATGATTCAATTTTATCCTAACAATTTTCAACATCATTTAATATGATTTTATTGGATTATAAACTAAAAATAAATTTATACCAATCATTTTTTAATTGTATTTAGCGATTAAAATGTTTTAAGATAACCCAACCAGAAGATGGAAAAATAACTGATTGACCCTTTATTTTTTTACTATTTAAAAACTTGAATATTTTCAATAAGTTATAACATGAAGATTTTTGATTGGGTTTTTGACAAATTTTATCATAATGACTTGTTATTTCTTATTATTTTGGTTTATACTAACT # Right flank : ATTTTGTTCTATGGCTACGCTGATTATTTAAAATTTTTGTGCCAATCCCTTGAAAATTTTATCCTTAACCATTATGAAGATGGGGAATTTATATTAACTTTTTTGGGGCAATTTATGACCGAGCAAACCACCGAACAAACCACTATGGAAGAGATTATGGCTGAGACGACAACCGAGCAAGTCGAAGCACTTCATAGCCAAATCCAAGCGCTAGAAAATGAAGTCAAAGAAGCCAAAGAGACTGCCGCGCGTGCCAATGCCGAAAGCTATAATGCCCAACGCCGCATGGAACAAGAAACCGATAAAGCCAAAAAATTTGCACTACAAAAGTTTGCCAAAGAGCTTTTGGAGGTGGTTGACAATCTAGAGCGCGCCATTAAAGATACTGAAGAGACAGGTACAGATGACGCATCACTTAAAGGCATTCGCCTAACACATAAAGTACTGCTTAGCATCCTTGAGAAAAATGGCGTCGTGGCCGTGGGTAATGTCGGTGATAC # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.15, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTCACGACCGCACAGGTCGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTTCACGACCGCACAGGTCGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0.41 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //