Array 1 1526146-1530434 **** Predicted by CRISPRDetect 2.4 *** >NC_015572.1 Methylomonas methanica MC09, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 1526146 28 100.0 32 ............................ AGACGGCGATACCCAGCCCTCGCTGGTCAGCA 1526206 28 100.0 32 ............................ ATTCCCGGAGCGAGGCTCTGGTCTGTCCGGGC 1526266 28 100.0 32 ............................ GTCATTTTCCAGCGCTTCCAGTCCCTTCATAC 1526326 28 100.0 32 ............................ TCGTCGTCGTTTAAATGCCCGTCATTTTCCAG 1526386 28 100.0 32 ............................ TATGTTGCAACAGCGCCAAATCGGTGGCGAAC 1526446 28 100.0 32 ............................ AATACGCTGCCAGCTGCGCAAAAGATCGTCAA 1526506 28 100.0 32 ............................ CAGCACGCTAGTTGGCGTCGCCTTAGGCTGCG 1526566 28 100.0 32 ............................ CTTAGCATCCATCAAAGTTTGCAAAGTATTTG 1526626 28 100.0 32 ............................ GTGTCAATGCCGGGGGTTTCGTCCTGGTATCT 1526686 28 100.0 32 ............................ CTGTTATCTTTTACATCCTTTTTGGTGCACTC 1526746 28 100.0 32 ............................ TTAGCCGGTCGGCCAGCGCCGGAGCGCTTGCC 1526806 28 100.0 32 ............................ GTAATCTTTAATCAGTGACTCGGCGTCGCTGC 1526866 28 100.0 32 ............................ ACCCTACATCATGCGTTTTCGGTGTTCATTAA 1526926 28 100.0 32 ............................ TGTCACGTACTGCGTTTCCGATAATCACGCTT 1526986 28 100.0 32 ............................ GGTGTACTGGTGCATGAAATGCCGCACTACAG 1527046 28 100.0 32 ............................ GGTCCCGTTGGCACAATCATAACTCTGACACT 1527106 28 100.0 32 ............................ GCAGATGCTCAACGGCAACAACGAGTTGTCTG 1527166 28 100.0 33 ............................ GTATTGCGCGACAATCTGCTCGACGGTCATCTC 1527227 28 100.0 32 ............................ ACATGCCCGCTACGGCAACATCCATTGCTGCA 1527287 28 100.0 32 ............................ ATCGAGCTACAGGAAAACACGGTCAGGCACGG 1527347 28 100.0 32 ............................ ATCAAGCACGTGCTGCGTACCAAGCACGGGCT 1527407 28 100.0 32 ............................ TCGCTACGTTGTTTTCTATTGGTTTGGTAGCC 1527467 28 100.0 32 ............................ TTCAGCTGGTCGTTCTCGGCCTTTTTGCGGTT 1527527 28 100.0 32 ............................ TCAACGATGACCAAATCATCATCCAGCCGGCG 1527587 28 100.0 32 ............................ AAACGCGCTATTTTTTCGCCGTGCTGCTCGAT 1527647 28 100.0 32 ............................ GTAACGCCAATTTTTGCACAGCGTTTTTATCC 1527707 28 100.0 32 ............................ ATTGGGCCGAAATGCCAAAAGGGGTGTCGATA 1527767 28 100.0 32 ............................ TCCTTGATTGCGTCGTCGTGTACTGTGCCGCC 1527827 28 100.0 32 ............................ AATCCGCGGGCGAGAACCAATACAACTTATTC 1527887 28 100.0 32 ............................ AATCCACGGCAATTAGCGAGATAGCCCCCGCC 1527947 28 100.0 32 ............................ GATACGCGACGAATTTAACGCCAAGTTGGTGG 1528007 28 100.0 32 ............................ GCCAGCGCCTGGCTAAAGTATTTATTGCTGAA 1528067 28 100.0 32 ............................ CTGCGGTCGCCGCCGGCGCGACCGGTTAACCA 1528127 28 100.0 32 ............................ TGCTTTGATAGGCGTATTAAACAGCATGTCGG 1528187 28 100.0 32 ............................ GATTGCATGCGGCGGTGCCAAAAGGTGATGCG 1528247 28 100.0 32 ............................ AACTAATCCCAGCGCCGTAATGCCCACCTAAA 1528307 28 100.0 32 ............................ TGCCCCAGGAGTGCCGGTAATCAAGGTAATCA 1528367 28 100.0 32 ............................ GGACACGATCCGGAACCCCAGGAGACCGGACT 1528427 28 100.0 32 ............................ AAAGGAACATCAGCCGGACACGATCCGGAACC 1528487 28 100.0 32 ............................ ATCCTGATCCATCGTCGCAGTGTCCAGCTCGG 1528547 28 100.0 32 ............................ AGAAACAGTACGGCCAAGACACAGACAATAAA 1528607 28 100.0 31 ............................ AAAAAACATGAGGCGGCATAACGGTATTACC 1528666 28 100.0 32 ............................ CAACGTCGAACAAGCGGGCAACTGGATTAAAC 1528726 28 100.0 32 ............................ TGTTAGTAACGGGGGCGACGGTCGCGCCCGCG 1528786 28 100.0 32 ............................ AGGTCAAACGAGTATTTATAGAAATTCATACC 1528846 28 100.0 32 ............................ CAACGTCGAACAGGCTGGAAATTGGATTAAAC 1528906 28 100.0 32 ............................ ATAGCCGAAGATGTTATAGAGATGCGACGACA 1528966 28 100.0 32 ............................ ATAAGTGGAGCAGCCAATAGAGTCGGGATACT 1529026 28 100.0 32 ............................ GCTACGTGGGCAGCGGGTCAGGTTAGCAGATT 1529086 28 100.0 32 ............................ AGTACCATTGTTGAACAGATAAAAATCTGTTT 1529146 28 100.0 32 ............................ CGCTGCCCACGTAGCGGTAAGAAAAGTTAGTT 1529206 28 100.0 32 ............................ GCTACAGAATCGGCGGCCGATAGCGTCAACAT 1529266 28 100.0 32 ............................ GCTACAGAATCGGCGGCCGATAGCGTCAACAT 1529326 28 100.0 33 ............................ AGACCAATTATGACGATTTGATGGGATTGGCAA 1529387 28 100.0 32 ............................ GGGTGAAAGCTGTGCCCAAGCTGGTGCGGGCC 1529447 28 100.0 32 ............................ TAAATTCTTCGTCGCTTTGGCACGCCACGCAT 1529507 28 100.0 32 ............................ CAGCCACTGTAGCCATGGCCGACGCATGGTTG 1529567 28 100.0 32 ............................ AACGGCTTTGCCGGCTATGTCGATCTGGCCGC 1529627 28 100.0 32 ............................ GACGAAAAGTCGGTCGATGTGCCCGATTCCAG 1529687 28 100.0 32 ............................ TTACGAATTCAAACCCAGGACCTACATTACCG 1529747 28 100.0 32 ............................ CGTCAACGGTTGGGCCGCTTTTGCCTATGCGA 1529807 28 96.4 32 .....T...................... AGACAGTGACGGAGCACCTAGTTTTATGGGCA 1529867 28 100.0 32 ............................ TAAATACCTGGCTACCGTGGATGCAATGGTAT 1529927 28 100.0 32 ............................ GGATACTGCGCATTGATGGCCGCGATTTTAGC 1529987 28 100.0 32 ............................ AACTGATCGTGCACTACAAACACGCGGTGTAC 1530047 28 100.0 32 ............................ GCTGTCCAGATCAAACCAAAACCCATCATTGG 1530107 28 100.0 32 ............................ TTAATACAAAGCGCCATAGCCATGCGCGATCA 1530167 28 100.0 32 ............................ AAACGCTGGAAGAAGCGCAGCGACCGCCGCAA 1530227 28 96.4 32 .................T.......... GAATTAACCCACCGAATCGGCGTTATAGGAAC 1530287 28 96.4 32 .................T.......... GGAATACCAAGAGCAAGTAAAAGCTCTTGAAT 1530347 28 100.0 32 ............................ GCCGAGCATGTTCCAGGCCTCAATCACTAATG 1530407 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 72 28 99.8 32 GTCCGCCGCCGCACAGGCGGCTTAGAAA # Left flank : TTCGACGAGGCCAAGCGCCGCTTGCTGAAAATTGTTAGGGCTTGGAACGCGCACAACCCGTTCCAAGCAAGCAACCACTATCGTCGGTCCGCCGTTAATTGATTGCGCCAGTTTTCCGCACGGTTTTTGTTGTCTTCGATGGTCGGGGAATCTTCGCGTCTGATTGGGCTGGGGTTTTAGCGGCTTGTTGATCGGGATTCATCGTTCCGATATGGACTACGCCATTGCGGGCGCAAATATCGACATCGTCGCCCAGGGTAGTAAACCAATGGCGTTACATACGGTTAAAAAGCCATAGTCTGGCAATACGCTGCAGCCGGGTTTAGCGGATATGGCCTAAGCGGCGAGGCCGGCGTACCCAAATTTTGACCCAAGTTTTTGCGCTCTTTAAAAATATAATAAAAATCAATTGGTTGCAGTCTGCGGGTTTTCGGAAGGGTAATAAGGCTTAAACCCTCCGCAAGCCGCTATGCAACTGGCTTGGAAGTTTTATACAATCA # Right flank : AAATCATGCGCAGGGCAGGGCAGGATAGTCAAGGTCGGGACGTTAGGCGGTAGCTTCAGGACGCGCTTACTAAACAACGTAAGCGATAAGTACTGTTAACTGCCGTTATTGATTTTGCATTAGTTCGTTTTAACGGCTAAAAACTGTAATTCCCGGAGTATATAGGAAAATTTAGCCTGTAATTGTTTTGTGATACGAAACAAATAATACGTTAAATACCTGATTGAAATTATTTATTAGGGGTATATAGTTAAACCGTACTTAACAGCGGCTGAAACATTTCAAGGTGGCGAATATGAATAGAAGCAACAATGTGTATAGAAACGTAATGACCAAGTTGTTTTTGGTAACCGGTATTTTGAGTTTTATGTCCGGTCAGTTCGTGGCGTCCACCTTTTTATTCGGCATGTCGTTTTTAAGCAGTAATCTGATTTTAGCTAAACCCGTTCGTGCGTAAGTTTTGTATGTGACCTCCCCTGCTTGTCAAGCGGTAACTCCTG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGCCGCCGCACAGGCGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACCGCCGCACAGGCGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3370177-3371176 **** Predicted by CRISPRDetect 2.4 *** >NC_015572.1 Methylomonas methanica MC09, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================== ================== 3370177 32 100.0 32 ................................ GGTTCCCTGGCTATTAGCCCACCCCAAAAAAC 3370241 32 100.0 32 ................................ CATCTGCCCGACCTGTTTTACCAAGCCAACGG 3370305 32 100.0 34 ................................ CGGTTGAGTTATCCACTCTGATTACATAGGGCTG 3370371 32 100.0 32 ................................ ATAATGGCGACGAACACCTGATCAAAGCCTTT 3370435 32 100.0 33 ................................ GATTTCCGTTGCACGCTCGGTGGCCGTGGCGGT 3370500 32 100.0 32 ................................ TTGCTCATGCGTGATCGGGCATCAGGGCTAAA 3370564 32 100.0 32 ................................ ATGCGCTGCAGCTCCGGCTCGCGGGCTTGCGG 3370628 32 100.0 33 ................................ AACAACTATTGATCGCCATTTGTTGCTTAGGCG 3370693 32 100.0 32 ................................ CACCATGGCTAAGTTACCGGAGGTATCCGATG 3370757 32 100.0 32 ................................ TGTACACATCTACCCAAGACGCAAAGATTTAA 3370821 32 100.0 33 ................................ TATGATGGGCGAATCATCTAGCATTTTTTGCGC 3370886 32 100.0 33 ................................ AACTAACCTGCAGTCTCAACCGATCATGGCGGC 3370951 32 100.0 33 ................................ TCACGTGTTCTTAGGGAAACTGGTATCGATCTG 3371016 32 100.0 33 ................................ GTATATGTGACCAGCATCGAAAGCAATTCCGCG 3371081 32 100.0 32 ................................ AATTTGAGATCGCAGTGATGCCTCGCCAAGTC 3371145 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================== ================== 16 32 100.0 33 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : CGTTTTTGTGGAAATAAGCCGGAGCTTTAATCATGATGATCTTGGTGACTTACGACGTCAGCTTTAAAAACGATGGCGGCCCGAAGCGCCTGCGCCGCATGGCCAGATTGTGTCAGGTGTTTGGTCAGCGCGTGCAATATTCGGTGTTCGAGATTGAAGTGGATATGGCGCAATGGACTGAACTGAAGAATCAGCTGATGGGCGTAATGGATCCGGAAGAAGATAGTCTGCGGATTTATTACTTGGGTAGCAACTGGGAACGCAAGGTCGAACACATAGGCGCGAAGAAGGCTATGGATTTGAACGGCTTATTGTTGTTGTGATGCGAACCCCAAGCGAACATGGAAATCCCGCTGGTTTCGCATTTGCGGAAATGCCCAGTGTTTACGCCGATTCTTGAATTTTCCGGAAATACTTTAGAATGTTATTTGCGTTGATTTTGATCGGTTCGCATTTCATAGGCGCTTTTGCCTTTGAAATCAACCGATAACCTTAACGCT # Right flank : CTTTTAGGACCGCGATCAGGTGAGGTTTGTAGTGGTCAACTTTTTTCGGACACACAAATAAGTTGTTGCTCTGCCATTTTCATTTCATAGCCATTGGGCGGCAGGTAACCCAACGCCGAATGGCGGCGCCGACTGTTGTAGAAATTGACTATGTAGTCGGTTATATCGCGTGTAGCCTCGGTATGGTTAGCATACTGGCGGCGCCAGACGCGCTCCATTTTCAGATTGAGAAAGAAGCGCTCCATCACCGCATTGTCCCAACAATTGCCTTTACGACTCATACTGCCTTGTAAGCCATGGCGCGTCAGTAAATCCCGGTACTCGTGACTCGCGTACTGGCTGCCTCGATCAGAATGTACAATCAAGCCTGGCGGAGGCCTCCGCTGGGCAACGGCAATCTGCAAGGCGGTACAGACCAGCTCCGCCGGCATATTGGGCGCCATGGCCCAGCCGACGATTTTGCGCGAATACAAGTCCAGCACCACCGCCAGATACAGCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 3372471-3373347 **** Predicted by CRISPRDetect 2.4 *** >NC_015572.1 Methylomonas methanica MC09, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 3372471 32 100.0 33 ................................ CAGCATCGGTAGGAGTCCAATCACCTAGATTGG 3372536 32 100.0 34 ................................ ATTCAGGCTGTCTGTTGAAACGGTTGAATTGCTG 3372602 32 100.0 33 ................................ GACCCGATGCAATGATTATGCAACACGCGTCCT 3372667 32 100.0 32 ................................ AATGATGCCATTGAGAATGCAATCAAATTGAT 3372731 32 100.0 35 ................................ TAGCAGATCAATTCCTTTCTGTACGGCCTTTTCAA 3372798 32 100.0 34 ................................ AGCTACAACGCGGCCACCAAAACCGCCCGCATGA 3372864 32 100.0 33 ................................ CGGCTAGAATGGGATTAGCCATAAAAGCCGTGC 3372929 32 100.0 33 ................................ TCCAACGGGTCTAGTCGACCAACGCTGCCTGTA 3372994 32 100.0 33 ................................ AATCGCAAGCTCGATACACTCTTTTGTCGACTT 3373059 32 100.0 33 ................................ CTATTTTATGCGGCGGACTCGGCCGAGGTACCC 3373124 32 100.0 34 ................................ GGCCTGGAAACGGCCATTAACAAACTAATCGAGG 3373190 32 100.0 30 ................................ TGGCATGCAATCGGCGCTGCTGGATTTAAT 3373252 32 100.0 33 ................................ GATGCGGCGGCAGGTGGTCTTAACATTGAAGGA 3373317 31 78.1 0 ...................-.AAA...TC..G | ========== ====== ====== ====== ================================ =================================== ================== 14 32 98.4 33 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : AGCGCTTGAGGCTGACGAACTCGCCGTCGGGCTGCATACAATCCCGAACGGCTGACGCCTAGCAACTTGCAACCCTGCTGTATCGTAATGGCCTTCTCTGACGTTAACTGTTGAATAACTTGATGTTTCATCGCAGTTCCCGGGCAAAGAAGGCCGAAGCCTTTTTTAGTAATTCGTTATCCGCACGCAATTGCCGATTTTCCAATTCCAGCTGCCGAATTCGCTGCTGATCAGGGGTTAACGGCTTGCCAATGCCCGGCTGGCCATTTTGCTCAGCCTCCACCTGCTTCAGCCAACGACGTACTGCCGTCTCGCCCAACTTGAGCTCCTGGCAAACCTGCGTCACCGTCAGGCCCTGATCCTGGACCATCTTCACCACCTGCAGCTTGAACGCCGCATCAAAACTTCGCCTTTCTTGTTTCATTCGTTTCACCTCGATAGTTGATAGTGTATCAACCTATTCGGGTGTCCATTTTTATTAGACCACTACAGTTTAATAT # Right flank : GCTAGTTGTCGCCTCGACGTAAAAATACTATGCGGTTATTTTGTCTGGATTAGCGACCTCCTGGGGCGAGTTGTTTTGGGTTTCGGCATGATCCGGATTTAGATGCACGGTATGGATTCTGTTCCAGTTCCGGGTGTTTTGGCTCCAGCGCCGTGGGTTTTGGCGGCGGGCGTCTTCATAGAGCGCTTTGCGTTGATTCAATAGTGCCTCGTCCAATCCGGCATGGCGTTGGGCCGGGGTCACGAAGCCAATGGCGCTATGCCGATGTTCGTGGTTGTACCATTGCACCAGGTCGGCTACCCATTCACGAGCGACGCACAGGTCGGCAAACGGTTGCAACGGGTATTGGGGACGATATTTCAAGGTTTTGAACAGCGATTCCGAGTACGGATTATCATTACTTACCGCCGGTCGGCTGAGCGAGGGCATGACGCCAAGCTGTTGCAGGGTGGCCAGCATCGTGGCGCCTTTCATGGGGCTGCCGTTATCGGAATGCAGGA # Questionable array : NO Score: 9.18 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 3375004-3375423 **** Predicted by CRISPRDetect 2.4 *** >NC_015572.1 Methylomonas methanica MC09, complete sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================= ================== 3375004 31 81.2 32 ..-....AGGGG.................... GCTCAAGCACCCTCATTTTTTGCGCAGTGCAT A [3375008] 3375068 32 100.0 33 ................................ GCGCCTTTGGCCCGAATAGAAGCGATTAATTGC 3375133 32 100.0 32 ................................ ACGCGAAAGCGTGAAGGGGGCCGCCCATGTTT 3375197 32 100.0 33 ................................ CGATGAAACCGTTATCCGCTGTCCTGGTTGGTT 3375262 32 100.0 33 ................................ ACCATTCGGCTTTTTAACTGTAACCGTATGCTG 3375327 32 100.0 33 ................................ GTTGGTAAGAACTATAGCAGGATTTTGAAAAAA 3375392 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ================================= ================== 7 32 97.3 33 GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Left flank : CAAGGCAGCGGCTTCAGCCAGCGCTTTGTCCTTACGGTTGAGTTCGCGTTCCAGACGCTGATTTTCGGCTTTTAAAGTGCGCAGTGTCTGGCTGTCATTGCCGCCTGAACGGGCGCTGGTGACGGCACAAAAATCGCTTTTCCACTGCGCGAGTTGATGAGCAAATAGCCCACGTTGCCGACACCAGGCATTCAATGCCTCGCCGGATATACCATGGCTTTCATGGAGGGCCAGTAAACGCTCTTCGGGGAGCCAATCTTGAGGGCGCTTGCCCACGTTTGGGCTTGACGTATCGGTGGGTGTGCTGCTTTTCATCCAGTTTTTTAAGGTATGTATGCTGAGGTTAGATTCGTCGGCAATGTCTTGAATGGTTCGTTTTCCACGATTGTAGACTTTTGCCAGAGCTTGCTCTCTGAACTCGTCAGAATACTGCTTTTTCGGGGTAATCATTTTCTAATCTCAAATTTAAGGCGTTCTAAAAATTTGAGGCGACAACTATT # Right flank : CTGTTGCGCAGTGTGCGTAGGCTTTTGCCATGGGGCGGAGATTCTCCCGGATACTGAGCATTTACGGATTTTAAAAAATAATGGCCGCCGCGAATAAGCGCCATCGAATTTACCGACTGCACGGTTTCATCGACACCCGACAGATAAACCTCGCCGGCCGGCCCAATGGCTATTCTGCCGAAACCGAATGCCGGTATCGGCATAGCCTGATCGGGCTCATGAAAACTGAGTCCGCCGTCGGTGGAGCGAATAAAATATTTCGGCACATAGTCGGGATCGGCGCTGGCCGAGCCCGAAGCGCGCCAGGTACTGTACAGGTTGCCATCGCTAGCGCCGCCGGTTTTATCGATGGCCAGCCAATTTTTATCCCCGGTGAATTGGTAGACCGGCTCCGACCAGGTCAAACCGCCATCCGCGGATTTGAACACCGAACTGGCATTGGTAGCCTCGTGGGCCATGGACTGATAATAAAAATGCCCCGCGGCATCCACATCCAACAC # Questionable array : NO Score: 9.12 # Score Detail : 1:0, 2:3, 3:3, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCGCCCCACGCGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCGCCCCACGCGGGCGCGTGGGTTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.80,-10.90] Score: 0/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.64,0.41 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //