Array 1 330903-328713 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADSAH010000003.1 Proteus terrae subsp. cibarius strain PR00018 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 330902 28 100.0 32 ............................ GTTCATCATAAAATGTGATGCAAATGTATGTC 330842 28 100.0 32 ............................ ACTCAACGAAAATAACACACCGAAAATTAGCC 330782 28 100.0 32 ............................ GACAGACGTAATGACAGATTAGATTTATATTC 330722 28 100.0 33 ............................ TTTGATAATCAGAAATAGCTGTCATAACTGTTA 330661 28 100.0 32 ............................ TCGTACTGTTCGCGTTTGAGTTGATAGATGGT 330601 28 100.0 32 ............................ TTATGCCGAGATGGATTAGAGATTCACTAATT 330541 28 100.0 33 ............................ TGGGACAATGATGAGTGGCTCTTGTTTCTTTGT 330480 28 100.0 32 ............................ AACAATACAGCGTTACGCAACGACTTTGATAA 330420 28 100.0 32 ............................ TAGAACATAATTTTTCAGTTCGGGGAGAGTTT 330360 28 100.0 32 ............................ ACTAGCAGAATTAATACCGCTAGAATCGCCAT 330300 28 100.0 32 ............................ GCATTGCGGTCGGCATGACACTGTTACCTGTC 330240 28 100.0 32 ............................ GATAGTCACGGCAGATTCGTCGATAGAGGCAT 330180 28 100.0 32 ............................ TAACGGCGCATCACGCTCATTTCGATATCAAT 330120 28 100.0 32 ............................ AGCATGGAGATTGAGTCAGCATTTAGTTTTTA 330060 28 100.0 32 ............................ TAATGTAGCAGTATTTTCAGGAGTTAAAACAA 330000 28 100.0 32 ............................ GATAGAGTGTCCGTATAACATAAAACCCATAC 329940 28 100.0 32 ............................ ATTCAACGCTTTATAAGCACAACTAGCTGCAG 329880 28 100.0 32 ............................ TGTTGAAATAGCATCGGTGATATACACAGCAA 329820 28 100.0 32 ............................ ATGATGGAGCACATTATTCGCTCAAGTAGTCG 329760 28 100.0 32 ............................ CCGGATAAGTTTGTGAAATATCCACTAACTCA 329700 28 100.0 32 ............................ ATCAAGAGGAACACGCATATATTTCTTAACAG 329640 28 100.0 32 ............................ ACCATCTGTGTTAGATAAGTAACATACTTTAT 329580 28 100.0 32 ............................ TCATGAGGCCCCGCCAACAACAGGTATTTTAT 329520 28 100.0 32 ............................ AAGAACTAGCTGAGGAAATTCATGGGCTTTCA 329460 28 100.0 32 ............................ TACGCGAGAACAGTACCAGTATAGGGAAGCTG 329400 28 100.0 32 ............................ GCGTACCGCCTCAAATGATGGGGATCATTCCA 329340 28 100.0 32 ............................ ATTCATTACCGCATTGCGATAGCCAGATGATA 329280 28 100.0 32 ............................ TCAGTGCAAGAGTATGAATACATGCAATCTCT 329220 28 100.0 32 ............................ AGTGGATTAAAACGCTTAATTTATCAACTTAA 329160 28 100.0 32 ............................ CGAAAAGTGCTCCGACTATAACAGCCGTCACA 329100 28 96.4 32 ...................A........ AGCAGATTTCATACGCTCATAATTCACTGCTG 329040 28 100.0 32 ............................ TGTTTTATTGATTGGTTACTCATTTCCTACCA 328980 28 100.0 32 ............................ TACCACCAATCACCAAAACTTATTCAGAGGAG 328920 28 100.0 32 ............................ TATTACAAATCCCCATTCATAAAGTGAGAGAC 328860 28 100.0 32 ............................ TGAGAAATCAACATTCCTTCATCGTCATTGCA 328800 28 100.0 32 ............................ TTAACCCTAAGATTGCCAACCGCAATAAAGGC 328740 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 37 28 99.9 32 GTTCACTGCCGCATAGGCAGCTTAGAAA # Left flank : TGTGGGAGAATATGCCTGTTTTACGCGCCACAATCCTAAATCTCAACAGCGTCGCTTAAAGCAATTGGAACGTCGAACTTCTTACTTAGCACAAAAACATGGTGTTGATGAAGATACTATGCGAGCGGAACTTTTGGCATCAATTGAGCAAAAATCGGGTGAAAGTAAATTGCCATATATTAATGTGCAAAGTTTATCAACATCTACTGAACCTCAGTTACGTCATAAGTTTATGCTTTTTATTCAATGCAATAAGTCGAACTCGCAATTGAGGAATAGCAACACATTTTCTTGTTATGGGTTGAGCCAAAAAGAAAAAGGGAAGCAGACTTTTGTACCTTGGTTTTAACCTAAATATTCAATAGCAAAACCCTTTATTTTTCGCTCTTTAAAAACTTCAGTAAAAACAACAAGCTATATGCGGACGTTTTTAATAAGGTAAGAATGGTTAAATCTTACTAACGTCTTGCTGGAGCTTGTTTTTTCGTGATAAAGCTATT # Right flank : TATAGAGGAGAGATTGTTTTTCAGGGTTAAGGGCTCACTGCATCCCGGATGTTTTATTTCCGTTCGTGTACAGATGCTAGAGCAATCCATTTATAACGTGAGAATGCGTGAGATGGAAAAGTTTCTTTTGGTACTAAAAAACTATAGAGAAAATAAAATTATTAAATATGGGGATAAGGCAAGGATATTTATTTGGTATATGGAAAATATACAGAAAATATACAGAAAAGAAACGCCACTATAGAAATAGCACTGCCTTTTTTAATTCAAGATTTTCGTAGTTATAGTTTAGGGAGTGATCTTTCAGATGATGAGATAAAAAGTACAATAAGGAAAGTTAAAGAGTATCTTATTCAAGCTGAAAATAGGTATAAAAAAACTAAAGGGTATGATAAGAGTTAATCAGAACACCAATAAGACACCAGAAATTGATAACTGATTGAATATATAATTCGATAACTGGCACTGCTTTATTTTTTCAATAAATTAGCCATTTCTGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-66.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 340425-339616 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADSAH010000003.1 Proteus terrae subsp. cibarius strain PR00018 contig00003, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 340424 28 100.0 32 ............................ TAAATACTCCAACAAGAAAGAACGGGTTAACA 340364 28 100.0 32 ............................ GTAAATAAATGGGTGAACGGGTAATAATGAAC 340304 28 100.0 32 ............................ AAAATCTAATGGCTCGTTCTCACCAAAGCGTT 340244 28 100.0 32 ............................ ATCGCCATAGAAAACTTTATTGCCATAAAGAT 340184 28 100.0 32 ............................ ATTAGCATTGTTGTTCGCATTATTGGCTGTGG 340124 28 100.0 32 ............................ CTATTGATGTTGACCTTCAAGACCCAATAGAA 340064 28 100.0 32 ............................ TTTATCCTGCATAATTACAGGAATGTTAGAGT 340004 28 100.0 32 ............................ CGGTACTGATGATCTGGTAGTTGCTCAAATAG 339944 28 100.0 32 ............................ TGTACGAATGTTCCAGCCTGTGGTTTTCCTTA 339884 28 100.0 32 ............................ TTGGAGAGCTGATGGTAAAGGATTAGGTAGAC 339824 28 100.0 32 ............................ GATAGAAGAAATGATAGATTAGATTTATATTC 339764 28 100.0 32 ............................ AGATGGATATTGCTTTTCCTCCTCACGAGTAA 339704 28 100.0 32 ............................ TATTGCAGTGAACACAGCCAGCATGAATATTG 339644 28 89.3 0 .......A.........T..T....... | G [339618] ========== ====== ====== ====== ============================ ================================ ================== 14 28 99.2 32 GTTCACTGCCACATAGGCAGCTTAGAAA # Left flank : GCAAGGGCGTGCAATGCAATGCTCCTCTCTTATTCACGTTATTATTGATTCAACGGAAAATACGATTAGTCGAGTGAGAGTGGGCGGAAAAGCGACAATGATAGGTTCGAAGATTATTACTCTTTAAATTACTTGCGGTATTTTATATCAAGTTATTCCTAATAGGCCCCAGTGTAAAAACTAGGGCCTTTGTATTTTAAGTATTTATATAAAAACGACGTATTTATTGCTTCTTAAAATTTTATTATTGTTCGCTATGTGATTTGATTTTTCATTAAATAGATTTTATGGCAGAAAATGCGTAGGTGGTTTTTGTGAAAGTACCCGGAACGTTGAACTTTGGTTTTGACTTAAGTATATTCAATAATTAACCCTTTTATTTTGTTCTTTAAAAACGATAACAAAAACAGATGGTTACATTTTGCTGTTTTAAGCAAGGTAAAAATAGCTAAATGTTGCTAACACCTTGCTGTATCTTGTTTTTCTATGACAATACTATT # Right flank : TTTATTTAATATATTTAAATCTTTTTCAGTAGTTATTAAAGCGTGTTTCACTTGTATATTCCTTTCTTATTGTATTTAGAAATAACTATTTGGCATTTTTTATAATTAAATTTTCCTTAATAGTTCACATATATACAATTTGCTTATGTCATGCTTATTCCTTAATTGGTATTGTTTGGAAGTGACTAAAAGAGGCTAAAGTAATGGAAGATTTATCCCCCTCCGATTTGAAAACCATTCTTCATTCTAAAAGAGCCAATATGTATTACTTGGAATACTGCCGAGTGATGCAAAAAGATGGTCGTGTTTTATATCTTACAGAGTCGAAGAAAGAGAATCTCTACTTCAATATCCCTATTGCTAACACTACCGTCTTATTACTTGGTAATGGCACATCAATTACTCAAGCCGCAATGCGTATGCTTTCACAAGCTGGTGTATTGGTAGGTTTTTGTGGTGGAGGTGGCACACCTCTACACATGGCGACTGAGGTAGAGTGG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCACATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: R [matched GTTCACTGCCACATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.40,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [81.7-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.91 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //