Array 1 426878-426376 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBWN01000001.1 Lacticaseibacillus zeae strain CRBIP24.58 Scaffold1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 426877 32 100.0 35 ................................ ACGTTGTTCCCTCAAAACCTTGCTACTGCTGACCT 426810 32 100.0 33 ................................ TGTGGCGTATCGGCCATGCCGGCAATGCTGGAA 426745 32 100.0 34 ................................ TCCCGGCCTTAGCACCGCCGTGTAATAACCACGA 426679 32 96.9 37 ......C......................... CAGGAACTTGTGCTTAACGTTGTCGTAAATGGATCGC 426610 32 100.0 36 ................................ AAATTGAGCCATTGACCGCCCTTGCGTGTGCTCACC 426542 32 100.0 36 ................................ ACTCCAAAATACCTGTCTGGTCTCGTTGGTGTCTGC 426474 32 100.0 35 ................................ CGCAACTAAAGGCACATCTGCGGATGGGCAAGGAG 426407 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 99.6 35 GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Left flank : TATGTAAGTACATTGTCTTTCCAGGCTTGTTCAATATGAATAAGTGCCCATTGACGTTTGCAAAAAACGAAATGCTGAATGCCGGATATTAAAAGCCAATCCTCTTCTGAATAATACAATTGAGTCACCTCCAAAGCAGCTATTAAATTCGCCTATGCTCATTATTTCACCTATCGTCTTTGATTACCAGCATAAGAAGTCAAAAATATAGCGCTTACAAGTTTGTGGCCAAAAGCTTTTTCAAAATTTAGTTGATCATATCAGGCAGGCATTGAAGATACGTTAACGTACTATGGTATATTGTTATTGAAGAACAACATGTTTTCGACAATGAAGGTCTGAGTGCGAATGTAGGGCACACATGAAATCGCCGGTACATTCGCACTCCTGTTGTTAAGTATATTTCGCAATTTGACTTGCTCTTTGCTTTTCTTGTGTTTTATAAATAGTTCCAGCCACAACATATTCGTGTTATGTGTTAGGAAACACATTATGTTGCG # Right flank : AGGATTGATTATAGCGGCAATTAAGTCTCGTAATCCTCATAATTACATGAGCTAAAATACGCCCTTTGAAGAAGCATATGGGGGTTAAATCATTCCAATTAAATGGGATGCGCAAAGCAAAATTATTGCTTGAAGCCTGCACTTTCTCCGCAAAAAAACCAGCATGAAACCCGACTGGAAGTCTGGCACATGCTGGCTTATTTGCTTGGAATGTCTGCTGAATTTACCTACAAATCCTTTCGCCATAAAGCTAAAACCGACAAGATAATAGCAGTCATCAAAGTTGTCTACAGCTCATATCGTTAATAGTTCATACAGTTAATTTCTTTAGATATCTTGCGATTTTTAATATAGTGTTAGTCTTTTTTCACCCATCCGTGACACTATGCGGCTTGCCCTCAACCCTGAGTACCTCTTCAACACTAGGCCGCTCACGCATTGATTCGTCAAACGCCCGTAGCTTTTGCAACCCATCAAACGAAAAGCCAAGCCGTCGCATC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCTACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: R [matched GTCGCAGTCTACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 435793-437956 **** Predicted by CRISPRDetect 2.4 *** >NZ_VBWN01000001.1 Lacticaseibacillus zeae strain CRBIP24.58 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 435793 32 100.0 35 ................................ CTAACCATATTCTTAATCGCTGATTTAGCTAGAAA 435860 32 100.0 35 ................................ TTACATTCTTGTTAGTGGTTGTCGGTTGGTTGTCG 435927 32 100.0 34 ................................ TAGGTGGTGGGTTGATGCCTGGGCGTTTGCTAAC 435993 32 100.0 36 ................................ TTGTCCAGCCAGGTGATGGATGCTCTGGAACGTTCG 436061 32 100.0 36 ................................ AATCAGTTGCGCATTAGCGTTGGCTTCGTTAGATAC 436129 32 100.0 34 ................................ TCACCAAACTAGTAACAAACTTTAACCAAACTTG 436195 32 100.0 36 ................................ CAGTAAGATATTCGCATGAAAATACTATCAGTATCG 436263 32 100.0 34 ................................ TAACGGTCGTTGCTCGTTTGGTTTGGCGTGACGG 436329 32 100.0 34 ................................ TAACAACCAGCAAAGTAGACCAGTTGGCCGTTTG 436395 32 100.0 35 ................................ AACATCGACATAAGCCGGCAAAACCTGACCAGCAA 436462 32 100.0 34 ................................ AAGATTCATGCTGATGTTGCTTCGGGTACAAATC 436528 32 100.0 34 ................................ CCGATAACGCTGACGATAAAACAGTAACATGGAA 436594 32 100.0 36 ................................ TTACCATTTACATGTAGGTATTACTAAAATGGACTT 436662 32 100.0 34 ................................ CAACACAGACGGGTCAAAACGTGTGCTATTGGTG 436728 32 96.9 34 ........................T....... CATAAAAGACGCGGTTAACTTGTGTATCGGCAAG 436794 32 100.0 36 ................................ ATAGATGGTTTTAGTTTTATAGTTACGCGTTTCCGT 436862 32 96.9 36 .....................C.......... AAATTCTCAACGACCGCACCCGCCCGCGCAGCTTTT 436930 32 100.0 34 ................................ ATATGGATTGTGCACTACGATACCAGCCTCCTCA 436996 32 100.0 34 ................................ AAGTTTTCAAGGTATCGGGAAGACAATAGGCGAA 437062 32 100.0 34 ................................ TAGGTGGTGGGTTGATGCCTGGGCGTTTGCTAAC 437128 32 100.0 33 ................................ CGCTGAAACTTATGCACGGCGTTACTCCTTGTC 437193 32 100.0 34 ................................ TTCTGCCAGTAGACTGAGAATCGCATACCGCTTT 437259 32 100.0 33 ................................ TTTTTTATTGCGGCTAGTCGCTTGTTTAATGCC 437324 32 100.0 35 ................................ TTTTTGTGCAGAATTCAGACGCGACTGAAATAACA 437391 32 100.0 36 ................................ TGGAAAAATAATGAAATGCCTAACCCATTTATGCAA 437459 32 100.0 35 ................................ TTGTTGCCAAAAACATTGTAGTAACGCTTGGCCGG 437526 32 100.0 34 ................................ TAATAAGGGTATTAAGGAATCTACTGAGGAGAAC 437592 32 100.0 34 ................................ TTGAATGTCATTATATGCTTTTACGCCGATGAGA 437658 32 100.0 35 ................................ TTGTTGGCGATAGCCTCAAGACTGTCAGCCACGTT 437725 32 100.0 34 ................................ ATGAAGGCCCCAATTTGGGCCAAAGACGCTCAGA 437791 32 100.0 35 ................................ GCAAGGGTTTAGCGGTGCAGGCCATTAGCAACAAG 437858 32 96.9 35 ...............G................ GAAAAGACTAGCACGGCGCTCGGTAAGGTTAATGC 437925 32 84.4 0 ....T......T..........T.T.....T. | ========== ====== ====== ====== ================================ ==================================== ================== 33 32 99.2 35 GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Left flank : CGACTATTAAAACAGGCTCAACAGTACGTCGTTCAAGTATTTGGTGATCAGCGTACTAGCGAAAACTTGGTTAAAAACGGTGTTGCACGTTTCGATGAGCATACGGGATTATGGATAGCCAGAGAAAGTCAATATGACGAAGATTTTGGATTGGATACAACGGACAAGGCCATGAACTATTTTGTATAATTAACAATCTTAAGTTGAAATTTAGATAACTTGATTTGTTGTCGAAGTTTCAAGGACAGGGTAATCTGAAGTGAGCGGTATTCAGTTGAATTGAAAACTGCTTTCTGGTGACAAGATGATTTCTAGCATCACTTTTTGTAATGCCTTCCCTTGGTGCGAATGGTGGGTAAACATATAAACCCGGGGAGATTCGCACCAGATTTATATCTGAAAGTACCGTGTTGACGTTTTATCTAGACTTTTTGATGTGTATAGTTAAGCACCAGCCGCAAGATGTTGTGATCTTTAGGCTTTTTGTGCAATATCTTGCG # Right flank : TTCTTATGATCTTAAGGTTGGTGGAGCACAATTTTTAGTCCACATGGCTACATGAATTACAACTCGCGACTGTCTGAACCAAAACAACGTTGCAGTTAGGCGTTTTGATAACTACCTGCAGCGTAGTCCTCGTAATTGAGTGCCTCGAGAATAACAACAATACTCAATAACGGTGATTTTAAAAATGGCCTCTTCCAATAACAGGGAAAACGCCATTTTATTATATTGAACATTGAATTACATATCGACCATGATTAACATCTGTAAATCAACAATCTCACAGGAAAATACGCCGTTCATTCGTGCACTTTGACAGTTTGATGATCTTGAAAATATGCGTGGGTTATCTCTCTCCAGCGTGTTTCATGAAAGACGGCTGCCTGATAAGGGTTAAGACCATATGTGCCAAGGGAGAAGCCATCGTTTGCCTCAACGACTAAAGTACGATTATCTGCTGTAACACCAATATCAATGGAACACGTGTTTGGTGCTTCTTTCCA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCAGTCCACGTGACTGCGTGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [8,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCAGTCCACGTGACTGCGTGAATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-5.40,-5.30] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //