Array 1 1608-26 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQTZ01000018.1 Leptolyngbya sp. 'hensonii' Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== =============================================== ================== 1607 37 100.0 42 ..................................... AATGCAGTGGTGTAAACACTCCATTGCAGCGCTTACCATGTA 1528 37 100.0 40 ..................................... ACGATCGTGGTATGGCCCACACCGGCACGATAGCGATAGT 1451 37 100.0 37 ..................................... CCGATCGCGTCGTTTCTGGTTATAAGCTTTCTCTCCA 1377 37 100.0 43 ..................................... CAACCCCTTGTACTCCCGGTAGTGAATCACCCGGCGATCGCTC 1297 37 100.0 41 ..................................... TTTGACTGGCCTGTGCTGGACAACGTTCGGTGGGGTGTTGT 1219 37 100.0 39 ..................................... GCGAAGAACTACGCTCAGAACCAGTTGGGTCAAAGGCTG 1143 37 100.0 44 ..................................... TTCCAGGCTGCCTTCACTCCGGTCCAGGCTTCCTGTCCAATTAG 1062 37 100.0 47 ..................................... GATCTACGATAACTGTTGTAATAGCAGGGAACCCGGCTTCAATCCGG 978 37 100.0 44 ..................................... TCTACTCCTGAACCAGATACTGAAATTCTATTTGTAGTTCCTAG 897 37 100.0 43 ..................................... GCAAAATAGATACGGAACCGCAATATTCTCCACTGAGGAGATG 817 37 100.0 39 ..................................... GTGAAAGCAGCGGGTGGTGTAAACCCGGCTGCAGCACCA 741 37 100.0 42 ..................................... GTTGGATTCTGGCCGCTCCATTACCGCTTACGGGGCAACCTC 662 37 100.0 39 ..................................... TTGATTGCTGCCTATGGTGGCTCCGCCCCCGCCAATACC 586 37 100.0 39 ..................................... CCCCAGAATCAGACAAGAAATTGAGCAAAGCCGAGTTTG 510 37 100.0 39 ..................................... ACTCCAATAAAGAGCGGAAGGCCGCGTATGCAGTTGCGA 434 37 100.0 38 ..................................... CACCTTTGATTGCAGAGTAAAATCCACGGCATATTCGC 359 37 100.0 38 ..................................... AGTTCACTCCAGACGACCCGAATTGTCAGTCGGGAGCT 284 37 100.0 38 ..................................... CTTGGCGCTTGGATTTTGCAACGTCGGCGCTAATTCGT 209 37 100.0 36 ..................................... ACCACCAGAAGGGTGGACGCCGTGTTGCGACTACGG 136 37 100.0 37 ..................................... TGTGTCTGCGTCAATCGACTTGGCGTAGTACAGAGTT 62 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== =============================================== ================== 21 37 100.0 40 GTCATTCCTTATCTCTTCCCCGCAAGGGGACGGAAAC # Left flank : TCCCCTGGATGAACCAACGCTAGCGCAACTCCTGGAGAATTCCTGGCTCCCTGTACTAAAGTTGAGTGAAGATAGCCTGCGGGCTTATCCTCTGGATGCGATCGCCCGCGATCGGACTAAGGTCTATGGCAGTCCGCCTCCCTATGAGCCTCCAGATTACATAGTTTTGTAACTTGTCTTGGAAGGGAATTCAGGGGCATCGTTTGGGGAGAAATGGGTGAGCCCAGGGTTTGGGCAATTGTAAAAGAATATGAAGACACTTGCTATTTTGTCGGATCAAGTTAGCACAAGCTTTAGTGAGTAAAATAGAGTAATTAGGAGTTTAAGTATATTTTTAGGCTTGATGGGTTAGAGAGAAGCTATTATTTTCTCAAACAGCTTTTTTTTCGGGAAGTTATCCACGCTCTTACTAAGATGTATCTTTTTGTTAAATCGAACATCCGTACTTTGGTGGAATTGCACCTTGAAAATAAAATAGTGAAAGGTTTCTAGAAGGTAGG # Right flank : CTACTACCAGTTATGCAGCCAAGGCG # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCATTCCTTATCTCTTCCCCGCAAGGGGACGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [20.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 2 18715-17439 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQTZ01000018.1 Leptolyngbya sp. 'hensonii' Contig_21, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =========================================================== ================== 18714 35 100.0 36 ................................... GAGAATCTCCAAAATTATCACGATTTTGATATCCAG 18643 35 100.0 41 ................................... TGGACTAGGGCACCGTCTTGGATATCGCAAGAGACCAGTCT 18567 35 100.0 42 ................................... ACTAACCAATGAGGACACACGAGGTTCTCGCGGACTAATTGC 18490 35 100.0 38 ................................... TTGGAAGAGAACATTCTGAGAAACGATCGCTTTGTAAA 18417 35 100.0 44 ................................... TTCTTCAAATGTCATGCGGCGAAACGCATTAGGATCAAAAGTAT 18338 35 100.0 43 ................................... AAAAGCTCTTCAGCTTTTTCGATCGGCAGCTTTTCATAGCTGC 18260 35 100.0 41 ................................... CTTAACCGCTTTTGGATCGCTGGAACGGACAACCGAACGAG 18184 35 100.0 39 ................................... ACCCATTGGCACCAGCAGAAACCTTGCGATCCCTTAACT 18110 35 100.0 43 ................................... GCTACTGGGGTTAATCCCATAATTGTGGATGCGAAAACCAACA 18032 35 97.1 43 ............................C...... TTTCCACCGCCCCATTCCCAACTACGTTGGGTTTTGCTGCACA 17954 35 97.1 47 ............................C...... TGCTCACCTTGCGGGCACGATGGGACTGACGATCGCTCTCCCGTTGA 17872 35 97.1 47 ............................C...... TTGCTGCGTTATAGTCCCGCATCAAGATGTCTGGATCCGTCATCTTG 17790 35 97.1 38 ............................C...... CAAAATTTTCGATTTGAGTCGAACGAAGGAATCTTCAA 17717 35 97.1 40 ............................C...... TCCAAGAGTGCTTTTGGCACTCCTGAGTTTTCCCACCAAA 17642 35 97.1 40 ............................C...... ACTTTCCGCCGAACCAATTCGGCAAACAAGCCTTGAGACA 17567 35 97.1 59 ............................C...... CTGGGACGAACGACTCAGAGACTGAGGGTGCGAAACCCACCACCACCATGAATGCCAGA 17473 35 85.7 0 ...C........................CC..T.G | ========== ====== ====== ====== =================================== =========================================================== ================== 17 35 98.0 43 GTTTCATTACCCATTCCCCGCAAGGGGATGGAAAC # Left flank : AGAAAATTTTGACGGGTCGAAGACCCGCAAAATTTAACCCCAATCAACAACCTGGATTGTGGCTGCCAGTCAGTCATTGATTGACTGACCACTAGAGGAGATGAGGAAGCTCCATCAGCAGGTCCAACGACGGGTAAAAGCCGAGGAGGATAATGTTCGTTTCTATTGGGTTCCGGTAGATGCCCTGGCCAGGACATTAACGATCGGGAGTGCGCCGCTGGAACCCCCACCGGAAGTTTACATAATTTAACGCATCCCCTCTAGACTTTCATAGAGGTTTTGCTATGGTAAGAGCAATTAAGATTATGACCTCCATAGGTCACGAAAACCTTGAAAACCGCATAACTTCGTTGACCTATGGAGATGCCGCGTCTAGCAAGGCTTTTGGGCCTCCGATCAGGCCGTTTTTTGCGAATTCAGGGGGCTTTTTGGGCCTTAAAATGGACCTATGGAGATTTGACTTCCAGGAGGCTCTCCTGATATAGTCTCCTACACGAAGG # Right flank : AGGCTAATTACCAAGTTCCGCAGCGGTAGCGATTGATCCCCTCCTGGGAGGGGTGGGTCTGCCTGGACACTCAGGCAGAGCCTGGGCACGAGGGATGACTTCCACACAAGCTGTCGTGACTTCCACACAAGTTGCCATGACTTCCACACAAGCTGTCGTGACCTCCACACAAGCTGTTGTGACCTCCACACAAGTTGCCATGACTTCCACACAAGCTGTCGTGACTTCCACACAAGCTGTTGTGACCTCCACACAAGCTGTTGTGACCTCCACACAAGCTGTCGTGACTTACATTAAAGTTGAAGACATGATCATTCATCCAGGAAAGTTGTCGGCATTCTGCCCTGTTCCATTCCCCTCGAAGGAATCCGTGATTGCAATACCTAAATCCCCTCTCGGGAGGGGTGGCCCGCAGGGCCGGGGTAGGTTAACTCTGGAAGACCCCCATTCAATCAAGGGTGTAAGGTTTAAATGTACCTTCAGGCCAGAGGCTAAGGTCT # Questionable array : NO Score: 2.98 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.06, 8:1, 9:0.89, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCATTACCCATTCCCCGCAAGGGGATGGAAAC # Alternate repeat : GTTTCATTACCCATTCCCCGCAAGGGGACGGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.90,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 235305-230509 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQTZ01000043.1 Leptolyngbya sp. 'hensonii' Contig_263, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =================================================== ================== 235304 36 100.0 38 .................................... CGCGGCATGGCCAGCACTGAGCAAGCAAGCGGCCTTCT 235230 36 100.0 41 .................................... TGGCAATAATCCCTATTAGGGACACATCGCTACGTGTTCCG 235153 36 100.0 39 .................................... TTTCGTTTCGATGGTTCCATATCACCTCAATTATCTAAG 235078 36 100.0 40 .................................... TCAATTTCTGCCAACTTGGGAAACACCTTGGTCAGGTCCA 235002 36 100.0 37 .................................... CCGGAAGTATCCACAAACCTATGTATTGACCTGCATC 234929 36 100.0 42 .................................... TGGGCTTCTTTGACTAAGAACATCTCTTTTCTCCTTGCCCTC 234851 36 100.0 39 .................................... GTCCTTATAAGAAATAACTGGATTACCCATTATTTTGAT 234776 36 100.0 37 .................................... GTCCTGTTCTAATAAAGGCAGGCCAGCCTCAATCGTT 234703 36 100.0 36 .................................... GAGGAGTTTGGAAACGACAGAACTTACCAAATTGAG 234631 36 97.2 39 T................................... GAGGTAGAACCATTTTCCCGAATTTGATTCATCATACGA 234556 36 100.0 38 .................................... AATAGCGGCGTTCGGATTCAGTGTTCAGATGTTTTGAT 234482 36 100.0 35 .................................... GGCCAGAAGCGGCAACAGCAGACTGAGGCTCAAAT 234411 36 97.2 44 T................................... GCCACCGGTGCGGTCCTCCTGCTAGCCGCAACCGATCGCTGGGT 234331 36 100.0 51 .................................... AGGCAGGGATTGCGCGTATAGCGCTGAGCACAAGATCAAAGCTTCCCTGCA 234244 36 100.0 45 .................................... ATTAATCTGTCCAGTCAAAGCAACAGCAATCTTGATGCTGGTATT 234163 36 100.0 37 .................................... CCCTCGGTGGCTCCCCCCGGTAAAGACCCGCAGGATA 234090 36 100.0 37 .................................... AGAGGAATCTCTTCACTCATATACTCGTTCAGATAGG 234017 36 100.0 40 .................................... CCGAGAGTCAAGAGTCCTGCCAGCTCCAGCAGCATTTGAA 233941 36 100.0 36 .................................... AAGAACATGATGGCGGCCTCTGACCTCGGCATTGCG 233869 36 100.0 42 .................................... TGCAAAACTTGTCAACAACCCACTCAACAACAACATCAAGTA 233791 36 100.0 40 .................................... CACAAGTGCTCGCACGATGCGGCCTTTGTCAGCGTATTGA 233715 36 100.0 39 .................................... GTTATTTTAATCATGTTGGACACAGACACTCCGTAAGCC 233640 36 100.0 37 .................................... AACCCGAGCGGAAAATCCAAAGATGCTGTACTTTTTG 233567 36 100.0 40 .................................... CTTAACTGTTTCTAATCTAGGTGAAAGTATAGAGTTAACT 233491 36 100.0 43 .................................... TGTACTATCTTCTATAAAGAGTTTATTAGGGTCATACTGTGGA 233412 36 100.0 42 .................................... GAGTTTCGTACTGCTTCAATCCTGCAGCAATCAAGCTTGCCC 233334 36 100.0 38 .................................... CCGGATAGAAGACGGCGATTGGAAGGAGAATTGGCACT 233260 36 100.0 38 .................................... GCAAAGGTGTGGTGGGGACTGGGGAAGCGAATCAGGGG 233186 36 100.0 37 .................................... TTCTGCACTGTTTCTGATACTGCTCTCCAGGAACGTC 233113 36 100.0 33 .................................... GCCATCCTGATGCTTTCCTCGGTGCAAGTCGAA 233044 36 100.0 44 .................................... GCACTCCAAAAAGATTCTGCGGGGAACGGGATTTCCATCGTCAG 232964 36 100.0 36 .................................... ACAATAGTAAGCCCCTCGACCGGCTTGGAATTCATC 232892 36 100.0 35 .................................... AATTTGGCCACTACGCTGACGGGCAACGATCGCTG 232821 36 100.0 48 .................................... TTGGGACGGTGAACTCGCCAGACTGTTTCCTGAGATTCAACTAGTGTA 232737 36 100.0 38 .................................... CCTTAACTACTTTTGGCTTGATAGATTTGCGGAATTTT 232663 36 100.0 37 .................................... ATAGCTTTCGGATCGGCGATGCACTCCCCGTCTGAGC 232590 36 100.0 35 .................................... GTTTAACCCAGTGGTCTTCGGTCTTGTCGTTGGGT 232519 36 100.0 41 .................................... TTCTCCTTTGTTGATTGGTATTTATAGCGGGTACTGAATGA 232442 36 100.0 41 .................................... TCCCCCCCTGGTTGCCGAAACCTCAATCTGGTTACTGGCCA 232365 36 100.0 38 .................................... ATAAAAGCGAGCGTCGGGGTATAATTTTTGAATTTCAG 232291 36 100.0 34 .................................... TGTAGTATGACTCTTCCCAGGAAGTCGGGTAGTC 232221 36 100.0 42 .................................... TCTACACTGATGGGATTGAGAGTTTGGTATCCTGCTTGTTCG 232143 36 100.0 42 .................................... TCTAGACTCTGCCATAGCAGGGCTAACACCAGCCAATGCGGA 232065 36 100.0 47 .................................... TTGAGGATAAGCCTTGGAGCTATGTAGTCCAGTGAATCTTTTATCTT 231982 36 100.0 44 .................................... CCTTTGCCAGACACTATAGAGAGACCAACTGATCAGTTTCTCAG 231902 36 100.0 37 .................................... TCAGCCGCAAACAGATGAGGACTTGATCAACGCTTGG 231829 36 100.0 37 .................................... AGCTAAAAACTCTCCAGCAAATTATAGAAAATAGTAC 231756 36 100.0 40 .................................... AGTAGTGCTGCTGCAAAAAGTGCGCGATCGCCCGTTTAAC 231680 36 100.0 42 .................................... TGCTAAATACTTCTGTTTGTTTACATTAGATGTACTAGGACC 231602 36 100.0 39 .................................... CTTAGCCTTTATCGTTTCCTCCAGATCCTGAGCCACGAT 231527 36 100.0 36 .................................... TCGATTTGCTCTGTCCCTTCTGCTTCTATCAATGGG 231455 36 100.0 41 .................................... CGATTCAACGAAATAAACTGGACCTTTGTCAGTATCGAGTT 231378 36 100.0 48 .................................... CCCGGACCTTTCCCCAACTCCAATTGGTTGTAAGGGAACTGCCAGTAG 231294 36 100.0 38 .................................... ACGAGATTTATGGGCGCGTGGCTGCGATCGTGGCCAAA 231220 36 100.0 35 .................................... TCCAAAGCTGCCAGCCCAGGAGTCGAAATATTCGA 231149 36 100.0 40 .................................... TAATCTCTTGACTTACTGTGGCATCGCATTTTACGGGAAA 231073 36 100.0 39 .................................... AATCCGGTCTGTGGATGTGTTAATCGAAGAGTCGGAAAA 230998 36 100.0 35 .................................... ATTATGGGCTCGGTCCATCGATCTGACAAAGCAGC 230927 36 100.0 44 .................................... CGGTTAGGGTTGCCAGAAATAATCTGAGTAGACTTAAATGACTC 230847 36 100.0 48 .................................... ACGATTTGCCAGTTATCGTATTCGAACCCCGCGTGGTTTTCTGTGTAG 230763 36 100.0 36 .................................... CTGACAGGAGCCTGAGATCGTGAGTTTATTGGCAGG 230691 36 100.0 37 .................................... GGCCTGTGTACTGCTGGGGACTGACAGCAGTGTTTGA 230618 36 100.0 38 .................................... ACTGTGTAGACCTAAGTACTGAAAGTTGTATTTAAGAA 230544 36 88.9 0 ................................GCTT | ========== ====== ====== ====== ==================================== =================================================== ================== 64 36 99.7 40 CTCCCCACTCGCTGGGGAAACCAATTGAATGGAAAC # Left flank : TCAGGGATACAAGCCTTATCTGATCCGCTAAACCATGCTTTTCTACATCATCACGTATGACATTCCCTGCGACAAGCGACGGAAGAAGATCTCAGATCTCTTAGAGGGCTATGGGCAACGGGTTCAATACAGCGTGTTTGAATGTGTTCTAGCACCAGACAAATATGATGAATTGCGGCAACGGTTGAGAAAAAAGTATAAAGAGGATGTAGATAGTATCAGGTTCTACCCACTTTCGCGGCATACGCTGCTGCAGGTGGAAGTTTGGGGAGATCCACCGGTGACTCAGATGCCTGGTTCAACGATCGTATAGGTCATGTTGCGAGGGATCAGGAAAATGCCTGGAATCCCAGTTCTTTCGTTGTAACCTTCGATGCCTTACCTGGTATGGATTTCTACAGTTTCGGATACAATGATGGCAGGTGCTATGCACTGGAAAATCTCTATCCCTCGCAAATGGTGTCTGGATGCTTTAACAGGTCCAGGTTCCAAGAGCTAGG # Right flank : CCATTGCCACGACTCACAGATCTTCTTCACCCATGGTAGTAGTTCTTGGTAACAGCTAGGGTCTCAGGAAATTCTGCCCGTTTATATTCCCGTTGACAGGGGAAGGGATGATCAATCAACCAATGCTCACAGGATTGGGATGACAACCGGGAAATTTGACTTCCCCTCGTTTCAAACTCTCCATGCATACAAATATGCCCCTGATGGTCCCGCAATATGGATTTTGCAGTCTCGATCGTGAACTGCCCCTGATGTAGCCGACATAGCGATCGGACTCGACCTGCTCTAGAGTCGAGAGACAGGGAATCTTCAATCCCACCCTCAGAAAATAGTTCGGTAAAGTCAAACTCTGATTCGCTTGAGCAGAGCTTTTGAGCTATTGCATCAGCAATCATCTCAGGATGGCGCAAGTCCCCTTTGCCTCGAATACTCAGATTGTTGGAGATCGATCGTGTCCCCTGGGTCACTCTTTCTGTAACCCAATACCTTCCAGCCGTTTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCCCCACTCGCTGGGGAAACCAATTGAATGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,11] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-5.30,-3.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 2853-38 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQTZ01000001.1 Leptolyngbya sp. 'hensonii' Contig_135, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ====================================== ================== 2852 36 100.0 34 .................................... TAGAGGACTTTGGTGGTTGCCAGGAGCAAGGACC 2782 36 100.0 34 .................................... TTCCGTCAGGCTCAGTTACGTTCACTGGCAATAC 2712 36 100.0 34 .................................... GGGCATTAGGCGTTGACTTGGGGGTAGATTTCGA 2642 36 100.0 34 .................................... ATTTATGCGGACCCGGATACGGCCCAACATGCTG 2572 36 100.0 36 .................................... TCATACATGGTAGCACAATCATGTCATACATGATAT 2500 36 100.0 34 .................................... TTCCTCTAATCCGCCACGCATGGCGGCTACTTTC 2430 36 100.0 35 .................................... GGTTGAGACAACGGGTGGGAAGGCAGAACTGACCT 2359 36 100.0 34 .................................... GGAGTAGTCAGCTTTGAGGAATTCCAGTTCAATT 2289 36 100.0 34 .................................... GGTGGTTGGCTGCCAGAGTATCGATTCAGTCGGA 2219 36 100.0 34 .................................... CTCGTTCAACTGCCTTTAATTGGGATTCAGACTG 2149 36 100.0 36 .................................... ACAAGCCCTAGTACCACCACAATTCAGGCCATCTTG 2077 36 100.0 35 .................................... CCGATCGCTGGGCGGTTGAGTTATATCCACCCGAA 2006 36 100.0 35 .................................... CGTCGCAAATTGCCACCCCACAAAGCTGTCAGGTT 1935 36 100.0 34 .................................... TCTATACATTTTGCGTCTCAGCAATTTTTTTTGT 1865 36 100.0 34 .................................... GGCCATGATGGGCGGTTAATGCGTCCTGTGCCTG 1795 36 100.0 36 .................................... TCTTGATCTTCGTTGCCTGCAACACCGCTGACACGA 1723 36 100.0 35 .................................... AGGAGGAAGAATGACTATTTCACTCTGGCTCATAA 1652 36 100.0 37 .................................... TAGGTGTTCAGGAGTTGAGGATAAACATCCTTCCACC 1579 36 100.0 34 .................................... AATGGCGTCATCTCCTCACGCACGGTCGCCAAGG 1509 36 100.0 37 .................................... TAGGTGAATCACACCTGTTGCTGAGGGGGTTCTGACT 1436 36 100.0 37 .................................... GCTGAAGGAGACTTGACGCTAACGCTGGGAACAATTT 1363 36 100.0 35 .................................... TTGGCCTCATGCTCATCTGTCTGTGGCGGTCGCTC 1292 36 100.0 38 .................................... CTTAAACTCAAGGCGGACTGTTTCGGGATTGCCCCAAG 1218 36 100.0 35 .................................... GAGAAAGCTGCTGAGTGGGCTAAGGTCAGCAAGTC 1147 36 100.0 37 .................................... AACCGCTGCTGTTTGACAATCTTCCTGCTTCTGCCAC 1074 36 100.0 37 .................................... TCATTGGCGACCAATCTTAGGGTCGCATTACTGTCAG 1001 36 100.0 36 .................................... TGAATTGCGACTGAAAGCCTTAGATAATTGAGGTGA 929 36 100.0 34 .................................... CTTAACCGTCGATACGATGACGGGGTGGAGTCGA 859 36 100.0 35 .................................... GGCACTGACCACGTATCCCAGGAAGAGAGTTAATG 788 36 100.0 34 .................................... TTGTACCACTGGCCAAAAAATTCATCCAGGCGGG 718 36 100.0 35 .................................... AATGGCTTGAAGATTATGGTGCCCACGATACCTTT 647 36 100.0 35 .................................... CAATCAAGCGGTGCGAAGAGTGGGCAAGCGTTTAC 576 36 100.0 35 .................................... ATACCTGGCCTAGCCCTCACCTGAGGGCTTTTTCG 505 36 100.0 37 .................................... AAATCGTGAGTCAGGCGACTGTTCAGTGCGTTCTCCA 432 36 100.0 37 .................................... TAGAACTCGCCTGTCATGGTGTTAGTGATTTTATAAA 359 36 100.0 35 .................................... ATCTTCCTGCTTTATACAACGCCATCCTTTGTAGC 288 36 100.0 35 .................................... AAAAACAAAAAACTCGCAGACGCCATGGCCGATGC 217 36 100.0 37 .................................... AACCTCAGATTTTTGGGGAGAAACCACCATGGTAGTC 144 36 100.0 35 .................................... AAAACTGAAGGGGCACAAAAAGGAAAACCCAAGCC 73 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ====================================== ================== 40 36 100.0 35 CCGCGTAAACCTTTGATGCCGCAAGGCGTTGAGCAC # Left flank : GCGTTGGCGAAGAGCCTACAAGCTACTGCAAGGCTATGGGGAGAGTCTGCAGTACTCGATTTTTCGCTGTTGGCTCAGTCAGCGCGATCGGGAGAAATTGCGCTGGGAACTGGAGAAAATTCTGACAGAGGACGATCGATTACTCTTGACTGGCTTATGTAACCGCTGCGTGGAGCGGATGCAACACTGTAATCGGCCAGAATCCTGGCCAACGGATGAGGAAGGGCATCGGATCTTGTGAGGCAAGCATGGCTGCTTGTAATAGATAAGGATGCCGATAAAATCTCAGAAACCCTTGCTAATCGTAGGATTTAGCGTTTTCATCTCCCCTTGAGATCCCTGCATCAGTTGGAATCGATATCGGAGCCTGGATTCCAGGCTAGATAGACTCAGTCTTCATGGAGGTTTGGCTGAAAGTGTGTGAAAATAACCTCACGGTTGATGTGGTGCTTGCAGAGTTGTCTGCCAGCCTAGTGCTGGTGGGAAATCTAGCGATCGCT # Right flank : CACCACTGACAATGGCAGCTCTCTGGCCCAGGCCGAGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCGCGTAAACCTTTGATGCCGCAAGGCGTTGAGCAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.00,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [21.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.01 Confidence: HIGH] # Array family : NA // Array 1 8605-5668 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQTZ01000037.1 Leptolyngbya sp. 'hensonii' Contig_45, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================== ================== 8604 29 100.0 33 ............................. CCTTAAGCCAGGAAATTGCTGGACCCGGTAGTA 8542 29 100.0 33 ............................. TTTGGAACCTCATCGGAATTTGCCCACCCGGAA 8480 29 100.0 34 ............................. AATCAGTCCGCCAAATCCGGCATTGCGGCTAAAC 8417 29 100.0 33 ............................. ATGGCTCCGCCCAGGAATTGAATGATTGGGTTA 8355 29 100.0 32 ............................. TCAACGCCCGCATCAGACAGGAACTGCTGGCC 8294 29 100.0 33 ............................. TATGCCAATGAAGTGCAGCGCCAAACGTTGGAC 8232 29 100.0 33 ............................. CTCAGGCAACAGTTTGAGTCGTATCGTCAGCAG 8170 29 100.0 33 ............................. TTGGGTCAAGAACGCCTGAAACTGGCTAAGTCC 8108 29 100.0 33 ............................. TGATTAAGACGGTTGATTTGAATAACGATGAGG 8046 29 100.0 33 ............................. CCTTTATGCCCACGGCAAGACGCTGGGCGGTTG 7984 29 96.6 32 ............................C GTTAAATCAAGTGATTGAGTTGAGCATCAAGC 7923 29 100.0 33 ............................. GTTGCAGCAGGCGCAATTGGCAGAGAAGTTCAA 7861 29 96.6 34 ............................A GCACATTGAAACCCCCAGTGTGTATGTGTTTAGC 7798 29 100.0 34 ............................. CGCAACAGGCTCAAGTCGAAGAACTACTCAAGAC 7735 29 100.0 33 ............................. TAGAAGGATACACACAGGCAGAGTTGGCGGAAC 7673 29 100.0 33 ............................. GCGATCTCGGTTGACAAATGACCCGCCCTGACC 7611 29 100.0 33 ............................. GCACTAATCGCCCGTCGGCTCTCCGAGACTCGC 7549 29 100.0 33 ............................. TTGGGGTGGTGTTGTCTCAGGTGGCCCGTCGTC 7487 29 100.0 32 ............................. GCGAATCCCCGATTTAGCGCACTGCTACGGCC 7426 29 100.0 33 ............................. GGGATAACCACAAACAGCACCGTATCGGAGAGT 7364 29 100.0 33 ............................. AACAGAAGACCTTGATAGCAGTACTGGATAGGA 7302 29 100.0 33 ............................. GGCTTAACACCGGAGCGTTATCGGCCCGTTATC 7240 29 100.0 33 ............................. GATTCAGGAGTTGCACCGGCATGGGCAAATATC 7178 29 100.0 32 ............................. ATTCCGCAGAGACTGTCGCGTTGAATTGCACC 7117 29 96.6 33 ............................T ACCAGAACGATGTTTGAACCGTCAGAGTGTTGG 7055 29 100.0 33 ............................. TCACACAGGTCCGGGTCTGCGGAATCCAACCCA 6993 29 100.0 33 ............................. ATACTGCTAGACCAGGGAAGTTCGTCCCCGTGC 6931 29 100.0 31 ............................. CAGTGCCTGTTGGTTGGCAATGGTTTTGTTG 6871 29 100.0 33 ............................. TTGCTCAACTCTGCCACGGCAGTTTGCATCACC 6809 29 100.0 33 ............................. AACGAAAAAAAAAGTCCAGAACCGGCTGGGTGA 6747 29 100.0 33 ............................. AACCCGGAGAAGCAGGGGATAAGGAGAAGGGGC 6685 29 100.0 33 ............................. CCGGGTCTGCCTCCGGTAATTGCGCCAACTTTG 6623 29 100.0 33 ............................. GCGAAATGCTCCGTGACTCTGGCATTGCTGTGC 6561 29 100.0 33 ............................. AACAATGACATGCGATCTTCCAGAAAATCTTCC 6499 29 100.0 32 ............................. GAAATAATGCTCATGTGGTTGCGGCTGTGTAA 6438 29 100.0 32 ............................. CCGGGATTATCCAGGTGCTTTGCCGCCTTAGG 6377 29 100.0 34 ............................. TGGCACACTGAACCTGAATCCAGTCAATTTGGGC 6314 29 100.0 32 ............................. TACAGTGGGAGCACCTGACAGCAAACCGCCAA 6253 29 100.0 33 ............................. CACGTTCAGCCTCTTGATTAGCCTGCCGCCGAA 6191 29 100.0 32 ............................. CAATCCCCTCAACGTTTTCAGGTCTTGATTAT 6130 29 100.0 34 ............................. GGGCAGCGGTAGAGTTGAACCCCAACCCCCAACA 6067 29 100.0 33 ............................. CCGCTGCAGGGATGCAGGATTGACACTGACACC 6005 29 100.0 33 ............................. AATCCCTGAACCTGGATTTCCGGGAGCTGATTG 5943 29 100.0 33 ............................. TATTGCCCCACATAGTCCGGATCTCCCAAGGAA 5881 29 100.0 33 ............................. AAAATCCACTGCTGGCACAGGAGGTCCAGGAAC 5819 29 96.6 33 ............................A GGCGGCTTGCCTGGAAAACGAACCGCCTCTCTC 5757 29 100.0 32 ............................. CTGTGCTGAGTCAGTCCACGCTTTGTCCTGAC 5696 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================== ================== 48 29 99.7 33 GTTGTCCCCACGCCAGTGGGGGTGAACCG # Left flank : AGCACGGGAGGCTTCTGGCATGACGGTTCGCCAGAAGTGCCGGGAAAAGTTTAGTAATTACCGACTCATGCAACGCATAATTCAGGATGTTGATAAAGTCTTAGGCTACATGAGTGGTGATACCGAGATACCAGCCGTGAGCTTTCTTTGGGATGATCAAGTTGACTGGGTAGAAGGGGGTCAAGATTGGGCTGAGGAGACGTAGTGATGGTGGTCTTTGTTTTAGAGAACGTGTCTCCTAGTTTGCGAGGAGAGATGAGCCGTTGGTTATTTGAGATAAAGGCTGGAGTATTTACTGGACGCATCTCAGCACTTGTTCGGGATGAGCTTTGGAAATATATCAGCGAAAAGGTAGGTAATGGATCTGCAATCTTGATCTATTCCACAAATAACGAGCAGGGATTTAGCGCTCGTATGTTAGGCAGTCCGTCCAGAACCTTAGAAGACATAGAAGGGATTTTACTAGCTAAAACCTAGAGAACTCGGCTATTTTGGGAAGT # Right flank : GGGAGATCGCGCTTCTGATCGCTGGCCAAGCCGAACCCCTGGGTTTCATGAAGGAAGCTTTATAGCAGGTGCGATCGCCCAGCTTAGTGCTACAAGTCCCTGAGCATATACGGCTGACGGTCTCGAACCCAGAACGGCTGTGGAAGGTGTCTCCCGTCAATTGTCGGGAAGTGCTGAAGTGGGACGGTCATGCTTGCCAGTACTGCGGCAGCACGAAGAAGTTGACGCTGGACCACGTGATTCCTAAATCAAAGGGTGGCCTTCATAGCTGGGACAACGTCGTGACGGCTTGCGAGCCCTGCAACTTGAAGAAGGGTGACAAACTGCTGCTTGTTTAGTTGATATCGAGACAGTGGAGGTGAGCTATCTGGGATCTGGATTACTGAGCAGGTAGATGCTGAGGATGGCATCTTCCTGCCCACAACAACAGCGATCGAGGAATTGGTTCACCAACTCTGGCAGCAGGGGCAAAAATCAATCTCTTCTCTGGCTTAAAAAGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTCCCCACGCCAGTGGGGGTGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCACGCGTGTGGGGGTGAACCG with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [41.7-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 185374-184701 **** Predicted by CRISPRDetect 2.4 *** >NZ_MQTZ01000045.1 Leptolyngbya sp. 'hensonii' Contig_54, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ================================================= ================== 185373 36 100.0 46 .................................... TAGGTGGTAGTGCCATTGTTGGTTTCGTTCCAGGTGTAAACAAAGT 185291 36 100.0 39 .................................... TTCTCCTTGAAAAGGGAATAAACAACTGAAACAATGACC 185216 36 100.0 45 .................................... CTTTGTTGGACATGGGAAATTCTCCTGCTTTTTCAAAAAAACAAA 185135 36 100.0 40 .................................... TAGAAGCCAAATCACCAGTGCAATAACCGCAGCAAGCACA 185059 36 100.0 40 .................................... TTTCTCGAAGAAAACAAAGATTCCCAACTACTTCGCAACC 184983 36 100.0 49 .................................... CCAGCGGAGTTCTCCACAACAACTCCGTCTTTGCATTTTGCAACCACTT 184898 36 100.0 45 .................................... CGACCTTAGAACCATCGAGACTCGGAGAGTCACGACGAGAGTTGT 184817 36 97.2 45 ...................................A CTCTCTAGCGGCATCCCTATCCGCTTGCTCCTGAGCACTCAGGAC 184736 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ================================================= ================== 9 36 99.7 44 CCCTACCAATTGGGTCAAATTGGAATAGTTGAAAAC # Left flank : C # Right flank : TCAGTCGTCCCAATTGGGGACTGTTGAAAAAACTCAACGGGGGCATCCCAGTTTTGCAAGGTTGCCCACCCCAGGGGAAGCCGCTCTGCGTCTACATCCCCCAGCCCCCTCTCCCGTTCTGGGCTACTGTGTACCCATAATCCCCTCCTGGGAGGGGTAGGGGTGGGTTCAACCCTCCTGCTCCCGTTCCTAGACCCACCCCGGCCCTGCGGGCCACCCCTCCCGAGAGGGGATTTCACGTGAGTCTGCTGACTTGAGCCAAACTTTTCAGAGATCTGTATACGCGGTAGCTCTCCCGCCGGGAGAGAGGGAGGGGGTAAGGGCTGAAAATCTCGGAGTTATTAAATCCACGATCCTAAAAACTCCACTGCCCGATTGCCCCATCCCTTCAACCCGCGATCGCTCCTTGGAAGTACCCCCTTCCAGACATCGAATAAGCTATGACCAGTTGCACTAAACCAGCCCCACCAACCGCAACCTCTCAACCCCTGGTTTGGTGG # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCTACCAATTGGGTCAAATTGGAATAGTTGAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.50,-5.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-1.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //