Array 1 152793-154161 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMHB01000005.1 Aerococcus urinae strain UMB0722 NODE_5_length_212929_cov_130.087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 152793 29 100.0 32 ............................. TCTCAACTCAAAAGTTAGGCGAAAGAATTAAC 152854 29 96.6 32 ............................C ACTCACCTCCTTCCTTTAAGCGAAAGAGCGGA 152915 29 100.0 32 ............................. GCATCAAAGACAAACCGTTACCTAGTTCGTTT 152976 29 96.6 32 ............................C AGTTAAGTCATGGGAGCGGTCAACAGGCTCAA 153037 29 96.6 32 ............................C AAAGAATTAGGAGGATAAAAACATGCCAGAAA 153098 29 96.6 32 ............................C TATGAAGTTGTAAGATGAGTTCTTCGTCTACC 153159 29 100.0 32 ............................. CCTTATAGTTACCTGCACAGATTTGATACTTA 153220 29 96.6 32 ............................C GAACATATCAGTCTAAATCATGAGGAAGTCGA 153281 29 96.6 32 ............................C AAAATAAGAAGTTTGAGAAAACAAAGAGGTTG 153342 29 96.6 32 ............................C GTGTTAAGATAAAAGTAAGTTAAGGGAAAGCA 153403 29 100.0 32 ............................. TGGTTTGTCCTAGTATGTAGTCGATGCTTACC 153464 29 100.0 32 ............................. ACAAGCTATAACTATCATCACTCATAATATAT 153525 29 100.0 32 ............................. TCGAAACTAGGCGCTTTGCCTAGTCTAGGGAA 153586 29 96.6 32 ............................C CAATTGGTCTATGTTTAATTTCATTTCAATTT 153647 29 100.0 32 ............................. GTCGTAAGCGATCAAGCTAATAAATGTTTTCA 153708 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 153769 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 153829 29 96.6 32 .C........................... AAAATCAGTTATCGAGAAGCCCAACAGATTCT 153890 29 96.6 32 ............................A TCGAGCAGATATTACTAGTCAGATTAAAAATA 153951 29 96.6 32 ............................A CTATCAAGTGATTCTTTTAAATCTCCTTGATA 154012 29 100.0 31 ............................. TCAGACCGGCCGTCTACCTTGGCTAGTAACT 154072 29 93.1 32 .C..........................C AGTGGAATAAGTCATTCTGTCACCAGCTAAAC 154133 28 75.9 0 ......-....C.......T.T.A...TG | A [154151] ========== ====== ====== ====== ============================= ================================ ================== 23 29 96.9 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : GCAAATTGCTATGTGCTTTCAAGCGTATCGAAGCGAGGATTGGCAGACCCAGTTTGATTAATTCAGAGAGAATATAGTTGAAGTAAGAAGGGAGTGAGGGGAATGATGCCTTATAAAAATCCTAGTCCAGGTAAGATTAAAAACGCCCACCCACTCTTAGTGACTTGTATGCAGTGTAAACACGATCTCTGTGTTTACTGGAAGGTTGGCCGCGGGAATCTGATCAAATTACAAATTCACCGAATTATTGAAGCTGAATATGACTTTGGTCAACGGGACAATGCCTTGTTGTGTCCACATTGTCAGGAACAACTGGGTTCCCTTAGTGAACATAAGGGACGGCCTTGTTATTTCTTGCATCGGGGCCGAGTACAGACTAAACGTTTGCAGCATTATAAATGCTAGCAAAAGCCCTTGTCTTTTTGTTATGATAAAATAAAAGTAAATGAAATTGGGCAGGTTCGGAATTACAAAGCTTGATTTGATAGGGATCTTTTAGT # Right flank : GAAAGGAAGTTAGCTATGTATTTATACTATGCAATCTTTACTCCATCAGAAGACAAATATGCTATTGAATTTCCAGATTTAGATGACGCTTACTCTTTCGGTGAAGATATGAACGATGCCCTCTATATGGCTAAGGATCTTCTTGAAGGATGGTTAATTGTAGCCAAAAAAGAAGGCGATTCAATCCCCAAAGCATCGTCTCCTGATGACTTGAAAATTTCTGAAGATGCATTACTGGTTCCTATTAAAGTGGATCTTGAACTTAGCTAATTGAAACATAGTCAACAATTGCTCGAGAAAACTTTAAACACTTTATGATATTTAAAGAAACTTAGTCTAGAGGCAGGGGCTTTTCGCTCATGAAGAGGTCCCCCCTTAGTCTGGTGCTTTATTGGTAAGCGTAATATATGATAATAGAAAGTAGGAGACTCGCTGTGACGCAAGAAAAGAAACGCCCTCGTGGCCGTCCAGCAACAGGGCGAAAGCGCGATAAAACTTTG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.57, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 173113-173809 **** Predicted by CRISPRDetect 2.4 *** >NZ_QMHB01000005.1 Aerococcus urinae strain UMB0722 NODE_5_length_212929_cov_130.087, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 173113 29 100.0 32 ............................. ATATTTTTGATACCTATCTTGATTATGACTGG 173174 29 96.6 32 ............................C GAAATCTGGGAAAGTATCAAGACGTACTTTGC 173235 29 100.0 32 ............................. GGCATGACTATCGGAGGCGAGTCTATCTTTAC 173296 29 100.0 32 ............................. AAAATAATCGTCCCACAAGTGGTGGACACATG 173357 29 100.0 32 ............................. GTGTCTAGTAATCCCATAATTTAATCTTCTCC 173418 29 96.6 32 ............................C AAGCTAACGTAGGGCTAACCTACAAGGTTGAT 173479 29 96.6 32 ............................C GACAACTTGATCTCCAACTCAATGGGATCATA 173540 29 100.0 32 ............................. ATACTTTTGGCAAAGACAAGATTAAAGCAGTA 173601 29 100.0 32 ............................. GGTACGAATAACTCCATGATTATCCACCCGGG 173662 29 96.6 32 ............................C GCTGACCTGGAATGACTTCATCCCCGCACTAA 173723 28 93.1 32 ......................-A..... GTTTGATCTAGCAACATCTTTGCCTAATCCAA 173783 27 86.2 0 .................--.......TT. | ========== ====== ====== ====== ============================= ================================ ================== 12 29 97.1 32 CTTTTTCCCGCACATGCGGGGGTGATCCT # Left flank : CTGAAAGATTCTATTATAGAAATTGCAGCACTTACGATTAAAAATGGAGAAATAGTTAAGGAATTTGAATGTCTTATAAATTATGAGGGAAAATTGCCTCTTGAAATTACTTCATTAACAGGTATTGATGATCAACTTTTGAAAAAAGAAGGTCAGAAACTAGAAAATGTTTTGAAAGAGTTCAAAGCATTTGTTGGTGAGGTAGATCTTGTTGGCTATAATATTTCCTTTGATATTAAATTTATTAATTATCATCTAAAAAAATTAAACTTACCTAAATTAAATAACAAAAGTATCGATTTAATGAGTTTTGTTAAAAAGGAAAAATTATTTTTGCCTAATTATAAATTAGAATCAGCCCTAACGGCCTACGGGATTAACGAAGAAGTTCCTCATAGAGCTTTAGCTGATGTGCATTTGATTTATGGGTTAGCGCTAAAAGTAAATAAATTTTTAAAATTTATGAATAGACAGTCGCGTAGTTAAAGGGATCTTTTAGT # Right flank : TGTTTAATTGTTATAAGATTATTTTTATAATCATTCTTCCATCTTCTAATTTTGGACAGAATAAAAGCACCTCACCTTCGATTGGCTAGTGCTTATTAGCATATTGGTTCTACTTTAGGTAAATTAATAAACTCTTTATAAGCTTCAACTACTTCACTTGGAGCACTTGGGCTAAGTCTTCTCTTGTCTTTAGAATCAGAAAAATCAAAATAAATATAATCTTCTATGATTTTATATAATTTTTCTTCTTTTTCAATTAAATTCATTTTTTACTCCTTGATAATAGCTATTTTAAAATCAAAGTTTGAAAGTGCACCAATAAGTGATACTTCAGCAAAAATTATACTTTCTTTCTTATTAATCGATTTCATTCCCAGATATTTACTAATGCCTTTAGTTAAATTATATCCGTCGTTATTTAACATATCAACGATTGCATCAGCATTTTCAACAAAATCGCTATAAAATAGATGTCTCGATATCGGATTACTAATACACTT # Questionable array : NO Score: 5.99 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.88, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTTCCCGCACATGCGGGGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTTCCCGCACATGCGGGGGTGATCCT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-9.90,-9.80] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [75.0-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //