Array 1 614-118 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIHS010000237.1 Yersinia similis isolate OK6609, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 613 28 100.0 31 ............................ TGTCGAGCTAATACCATTCCATCCCAACCTA 554 28 100.0 32 ............................ TCGAAACTAGGGGCCTCGTTTGGCGACGAGTA 494 28 100.0 32 ............................ TGATGGCGGTGCAAGCCGTCAGGGGTTCGATT 434 28 100.0 32 ............................ GAGCAGGAGGGACAGACGGTCGTCCCCGTTCA 374 28 100.0 32 ............................ AACATACTTAAGCCCAAAATCAGTATATTGAT 314 28 100.0 18 ............................ GCCCACACAATCTCTCCA Deletion [269] 268 28 85.7 32 ....CG..TT.................. TAGTATGATTCTGGATGGTATGAATAGTTCTA GAT [256] 205 28 100.0 32 ............................ CATGCTATTTCACTGGATCAGTGCATGCAGTT 145 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 9 28 98.4 30 GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Left flank : GGCGCAAGACATCGATAATTTGATGCAGCAAAACTGGTTACAAGGTATGCGTGACTACGTTCGATGCAGTGCGGTATTGCCGGTGCCTGAGGCAGTACAATACCGAACGGTGAGGCGAGTACAGGCAAAAAGCGCCCATAACAAGCGGCAGAGATCGATTGCTAAAGGGTGGCTAACTGAACAGCAGGCGTTTGAACAAATACCCGACACCCAACAGAAATCTCTCAGGTTGCCTTTTATTCAACTGCGTAGCCTTTCGAACGGCAATACGATGCGAATTTATATTCAGCATGGCGAATTGCAGGAACAAGCTCAGTTGGGAAGTTTCTCTGCCTATGGTCTAAGTAGCAGTACCACCATACCCTGGTTTTAACCCTTTTTTTCGGCTATTGCTAACTGATTGTTTTGTAATGGTGTAATGAGAGGGTGAGAAAAAGGGTTTCTCAGTCAATATCCTGATTTATGTTTAATAAACAGGGTGATGGCATATTTTCATTACC # Right flank : AGTGTTAAAGTACGAGAAATCGCAGACCGTCTAGTTCGCTGGTAAGCGTCCGGCGAACTCATATTGTTAATAAAACTCTGCTGCCACATGCTGCCCTCATTCAATACAACGAATCGGA # Questionable array : NO Score: 6.04 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGTGCAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 11403-9275 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIHS010000252.1 Yersinia similis isolate OK6609, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 11402 28 100.0 32 ............................ AATCAGCGATCCATTCAACTAACTCATTAATA 11342 28 100.0 32 ............................ AAGATGCCATCGACTCTATCTGTGAACCCATT 11282 28 100.0 32 ............................ TTACTCTATCTGACATCAAGACAAAATATTGC 11222 28 100.0 32 ............................ GATATGTTATTGCCTCTGCTATCCGCCACTGG 11162 28 100.0 32 ............................ ACGAAAGCGCCCACCGGTATAGCCAGCAGGTG 11102 28 100.0 32 ............................ CAAAACTCGTCCCATTGTTTTTCCATCGCACA 11042 28 100.0 32 ............................ CTTCACTTGCGAAAGTTAAAAAAGAATTAAAT 10982 28 100.0 32 ............................ CGCCCCAAGTACCACCAATAGACTCCCAATAT 10922 28 100.0 32 ............................ TACATGGCCATGTCGAAAGAGCACCAGAAGAA 10862 28 100.0 32 ............................ ATATAGAGCTACTAGAAGCTACCTTGTAAGCT 10802 28 100.0 32 ............................ TTGTAGCAGTCAATACATATAGATGCTCCTTG 10742 28 100.0 32 ............................ TTGGATGAGGGCTATTTCAGAGTTGCTTCAAG 10682 28 100.0 32 ............................ ATTCCCGAAGTTAACGAGATCATGATGGATAT 10622 28 100.0 32 ............................ CGAGGGTGGGGGATTGGTGCAGTATTCATAAT 10562 28 100.0 32 ............................ TCATCGATAGCGCTACAAGCACGCGCACTATC 10502 28 100.0 32 ............................ TAGACCACAAGGCTTATGCACTTGGATTAGGT 10442 28 100.0 32 ............................ AGAACCAACCGGCAGATCGAGCAGCATTAATA 10382 28 100.0 32 ............................ AGAAGCACAGGAAGAAGAAGAGACGCAGAAGA 10322 28 100.0 31 ............................ CAGGTGCCGGAATAATGATTGAGCCTGTATT 10263 28 100.0 32 ............................ CACGCATACAATCAGCCTTTTAACTTATAGCC 10203 28 100.0 33 ............................ TTGCAGTATTCAGTACATATAGATGCATCTTGT 10142 28 100.0 32 ............................ AAGAGTCGGAGACACTTGCGAGATTAGTCATA 10082 28 100.0 32 ............................ ATAGAGCGAAGCGTTGCGGGATTTCTTTATTA 10022 28 100.0 32 ............................ GCTCTTTAACAACTTAGAATACTACATAATAG 9962 28 100.0 32 ............................ TCTCTATGAACTCCGACTTAGTGCGAATTCGG 9902 28 100.0 32 ............................ CTCCAATAAATGTTAACAAATTATACCACACT 9842 28 100.0 32 ............................ AGAACCAAACCCCCCAACATATGCGCGGAATT 9782 28 100.0 32 ............................ GCGCAATGCTTCATTAGCGTTGGCCCCACGTT 9722 28 100.0 32 ............................ ACGGCAACACTCGCATCGAGTGGAGTGGGCGT 9662 28 100.0 32 ............................ GAGCTTGAGCCAATCGAAACAAACCATGAGGT 9602 28 100.0 32 ............................ TTAATGTTCGCTCCGTTACAGCACAGACTTAT 9542 28 100.0 32 ............................ AGTGGCTTAGGTGATTACGAGTGGTTTTACTT 9482 28 92.9 32 A...........C............... ATCCGTGTAAAGGGGCAGTTAAACCCCTATGT 9422 28 100.0 32 ............................ GGAAAGATACTGGCTCATAAAGATCCTTACGC 9362 28 96.4 32 ............C............... AACCTACCTGCTAGTCAATATCTCCCGCGTAA 9302 27 85.7 0 ...................A.A-.T... | C [9278] ========== ====== ====== ====== ============================ ================================= ================== 36 28 99.3 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : ATTGCTGCCCGCGGCGCTGGAGGGTGGCCAGAACTACACGGTGTAGCACCAGGTGGATCACCACAGAAATCAATAAGATTAGCCCAATCACCATCGTCAATGACATCACATCGGAGAACTCCATCCCCAATCTTTCCAGCCACTGGCTTATTCTTTGTTGCATCATTGCTCCTTTAAAACATCAATCTGACGAAAAGGCCTTAGCCTAAAGGCTATGGGCGCAGGGGGGGCACCTGTTTACCCTTTTTTACATTGTGGTTCTGTATCTTTGTTCGATTGTTGCCCAGCAAAGGGGGAGACATATTTATATGCTGTGGTTTATGACATGGTTTGTGGGATTGTACTGTGGTTTTATTATGAGTTATGTTCTGACCCTATTTTTTTAGCTACTGCTAACTCATTGATTTTTCATTGTAGTTACCGGTGGTCTAAAAAAAGGGTTTTTTCCCTATTAGCGAAAGAATTATTTTACAAACAGGATGTTATCGTATTATCTTACT # Right flank : TCCTGGACCATGCTCTGATGCTATTTGGGGATCAAAATTGCGAGCGGAAGCGCATTTTGTAACTGACAACAGGGATAATGGCATCTTTTATTACTGACTTTATGAGTATTAGAGTAAGGTAAATAGCAGGTGGCATATCAATATATACCCGTCATACTTCAAGCTGCATGTGTGTTGGCTGCTTTCGTTCACCCAGTCACTTACTGATGTAAGCTCCTGGGGATTTACTCAGTTGCCGCCTTCCTGCAACTCGAATTATTTTGGGTATAGAGAGAGTTATTTTTTGGAATAATATCCACTTGGTACCTAAATAAAGCGCTAACGGAAAAATAGCGCGGTGGATATCCCTCTAAGGAGTTTTATTTCCATGGAAAATGCTATTCATTCCTCTGATTTGAAAACGATCCTGCATTCAAAACGATCCAATATTTACTATTTAGAATATTGCCGCGTATTGGTTAATGGGGGGCGAGTTGAATATGTCACCGATGAAGGTAAAC # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 10099-7307 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABIHS010000331.1 Yersinia similis isolate OK6609, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 10098 28 100.0 32 ............................ ACTACAAAGACAAGAGGTTGGCCGTACATATC 10038 28 100.0 33 ............................ GTATAGAAACGCATAATTAAGAGCTTTCTTTGT 9977 28 100.0 32 ............................ ATTTGAATCTTCTGTAATGTACGAATATGCCT 9917 28 100.0 32 ............................ TCAACCCAAACAAGATTAAGATTAAAATATTT 9857 28 100.0 32 ............................ TCACGCAGCTTGGTTAGCGCTTTGGTTAAGCT 9797 28 100.0 32 ............................ AACGGCGGCTACAGTAGCGTTATTTCCAGCTT 9737 28 100.0 33 ............................ ATACGGTACTTCCCTTTGACTAATAAACTTCGT 9676 28 100.0 32 ............................ ACACGTGACAGCGTGGATAGAGCGTTATAAAA 9616 28 100.0 32 ............................ TACAGGCAAATATCCTAATTCTTTTATCTCAA 9556 28 100.0 32 ............................ AGTTGAAGATTGAGCCTCTTTAAATGTGAAAC 9496 28 100.0 32 ............................ TCGCGGAAAAACCGATAGGGGAGGGGTGAACA 9436 28 100.0 32 ............................ TTATGCGCTCTTGCCGTGCAACACAGAGAACT 9376 28 100.0 32 ............................ AAGCGCCGATAAATTGCCCATCACCTTTATAT 9316 28 100.0 32 ............................ AGTATATGGAAAGCCGATATTGAGCGCTGCAA 9256 28 100.0 32 ............................ ATCACATGCATCATCACCATCACGCTGGCGAA 9196 28 100.0 32 ............................ TGAATATTGAACGTCAGGCAAATGAAACTCGC 9136 28 100.0 32 ............................ CAGCTTAAGCCCGTCTCGCGTTCTATCAAGAT 9076 28 100.0 32 ............................ AGCTACGCGAGTATGTTGAAGATTTTTATTGG 9016 28 100.0 32 ............................ TTAAGAACACCGACCCCCGGTGCGCGAGCAGA 8956 28 100.0 32 ............................ GTTCATTGTGTAGCGCGGCTCGTAGTCTCCCT 8896 28 100.0 33 ............................ CTCAATAACATCAACGCTAATTTCTTGCATTGT 8835 28 100.0 32 ............................ ATATATGACTCGATAACTTCTTTAGTTGCTGG 8775 28 100.0 32 ............................ ATGCATATCCATCTCTAATTCAACTTGACGCG 8715 28 96.4 32 C........................... TTGATTGAAGCTATGTAATTGGGCGCTGCATC 8655 28 100.0 32 ............................ AATTAAGGAACTGCCAAGGCTCATCAGCCTTT 8595 28 100.0 32 ............................ AATAATTAAAGCCTTAGTAATGGCTCTAACTG 8535 28 100.0 32 ............................ GGTATTCTGCCGCGAGTTAGCCAACTGGCAAC 8475 28 100.0 32 ............................ AAACCGCCCAGATTTCTCGCATTGAGCAAATA 8415 28 100.0 32 ............................ AAGTAACGCAGGTTTACAGCTTCACCGCCCAC 8355 28 100.0 32 ............................ TGACTGCTAATATTAAAAAAGAGCATTGGTAT 8295 28 100.0 32 ............................ CGGAAGCATTCGGCGAGCGAGAACTTAACATT 8235 28 100.0 32 ............................ AGAACAGCTACCATCCATGGCTATGGGTATAT 8175 28 100.0 32 ............................ AATTATTGACCGTCTGCTCGGTGACTTCGAAG 8115 28 100.0 32 ............................ GGTAATACATCAAAGAAATCCTCACCGGCTTT 8055 28 100.0 32 ............................ AAGAATGTTTAAATGGGATAAGGACGGCAACT 7995 28 100.0 32 ............................ ATCGATAAAGGATCGGAAAGACGGCAGAAAGA 7935 28 100.0 32 ............................ TGACTGAACACAGTGAACCCGTACAGTACCCA 7875 28 100.0 32 ............................ TATGAAATGTATGTAGAAAAAGAATGGGTGAT 7815 28 100.0 32 ............................ ATAATAGAAGAAAGCTAAGTAAGTTCAGTAAG 7755 28 100.0 32 ............................ GTCAGCGTCATGACAAACGGGCAGGGGATGCT 7695 28 100.0 32 ............................ AACCATCCGGTATCTCCAGAGAGTTCAACCGT 7635 28 100.0 32 ............................ ATCGAACCAAGCCAAAACCCCCAATCCCCGCC 7575 28 100.0 33 ............................ TGACTTCTCACCCAATACGGTGACTTCCGAGGC 7514 28 100.0 32 ............................ CTCCCGGTTGGGTGGGCGTTCGTTGTGTGAAT 7454 28 100.0 32 ............................ TGAAAGCCATAAGTTGCAGGGCGGAAGTCGTA 7394 28 100.0 32 ............................ TGTTGATACTATATTCATTCAATAACGGGTAG 7334 27 85.7 0 .................T...CC.-... | T [7309] ========== ====== ====== ====== ============================ ================================= ================== 47 28 99.6 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : TAGGCTAGAAAAATCAATCGAGGTGATGAACCCTGGCAGGTAGACTATCAACTCGTCGTGGGAAAATACCGGATAGCGGATAATGCCGCCCGCACCAAGCAATGCCGCACCTAATCCGCAATAGACGATACCGCGTAACCGCACCAATTAGCCAAGAGTAGAGACCCACAGCCCCGGCAATGGAAGCAATTTGGCTGGCGGCAACCAACCGGAACCCTAAATAGCGCCCATTCCAATAAACGTCAGGTCGATGAGCGCCAGCTGTTTTTTAAATTTGCCCTGGACAGGCCAGAAACATTGGCCGCAGCTCCGCCGTTCTCCTCAGAAGAATAATCATTAGGATCCGGTTACATCCCCATAGATTCTTGTGACCCTCTTTTTTCCACTATTACTAACTTATTGATTTTTATGCTTCTCAGGTGTTTCACTAAAAAAAGGGTTTTTACGCATTTTTCGCAATTGCTAATTGATAAATATCAGCTTATCCGTATTATCTTACT # Right flank : TCTCAGCTATCTGGCGGCGCTTTATCTGCAAATATTAACTCACTAATCCCTTGGCATATTCAAACAACGCTTTTAGCAGCGCAAGTTTCTCTTTATCGTCTTCATACTGGTTATAAAATTGTTCCAGTTGCAAAACATAATCTTGTACCCGTTCAGGGCTAAGCGCTGAACGGCGATGCTGTAACCAGCGCTGTTGCTCACGGTCATTCAAGGTATTCGGGTAGTTACGGGCGCGGAAGCGGAATAGCAGGGCCTCCAACCGTGGGTCCTGAAATGTCAAATCCAGTGCGGGCAGATTTTGTGGCTCAGTTTGCTGGATAATCTTCATGGTGGCGCGGTCGGCATCACTGAAAAAGCCGTTATACAACTGTGTATCCACATCATCGGCAACCGTGAATGGCTCCGCTTGTGCAAACAGCGCGACCACTCTTTCACGCACCTGTGGGTTTTGACGCAGCAGTTGCAGATTTTGCAAACAACGCTGGCGATCAATCCCCAAG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //