Array 1 511501-512397 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHHO010000001.1 Streptococcus pyogenes strain K24357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 511501 36 100.0 30 .................................... TCAGCGCTTGAGAACTTACAGTTAACTCAC 511567 36 100.0 30 .................................... GATACGATATGTGCCAAGACATGCGGTCGT 511633 36 100.0 30 .................................... CTTTTTCCATTTCTACAGACGAGATGATTA 511699 36 100.0 30 .................................... GTTGGGTATTTAATCATGAAGGCGTTCGCA 511765 36 100.0 30 .................................... AAGTAAATGCCCTAACAATTATGTGCGAGT 511831 36 100.0 30 .................................... TTGTGGATCCTGCCTGTAAATCTTTGAGAG 511897 36 100.0 30 .................................... AACAGGTAAGCAAGAGGTGCCTCTCGTTAA 511963 36 100.0 30 .................................... CTTTGAGACCGACACAGGATATGCTAAGTT 512029 36 100.0 30 .................................... AGAAACAGACTACAACTTCTACGCAGTCCG 512095 36 100.0 30 .................................... ACACCATAAAAGAATGCGTTGTGATATGTG 512161 36 97.2 30 .........................A.......... TTGATAGTTTTCTGCTAGCACGTCATGGAT 512227 36 97.2 30 .........................A.......... GTCTCTAAAAGAACATGTACGAGATGCAGA 512293 36 100.0 30 .................................... TGTTCGCTGTCAGATAAGCCTTTTGTAGTA 512359 36 94.4 0 ......................G.........C... | T,TT [512388,512392] ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.2 30 GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Left flank : AGAAACCCGAAGTGAAATCGATGATTGACAAATTGGTTGCTACGATTAGAGAACTGATTGTCTTTGAATGCTTAGAAAATGAATTAGATTTAGAGTATGATGAAATCACAATCCTGGAATTGATTAAGTCCTTAGGAGTAAAAGTAGAAACGCAAAGTGATACTATTTTTGAAAAATGTCTAGAGATACTTCAAATTTTCAAATATCTCACTAAGAAAAAGTTGCTTATTTTTGTCAATAGCGGAGCTTTTCTAACAAAGGATGAAGTGGCTAGTTTACAAGAGTATATATCATTGACAAATTTAACAGTTCTCTTTTTAGAACCACGTGAACTATATGATTTTCCGCAGTATATTTTAGATGAAGATTATTTCTTAATAACTAAAAATATGGTATAATACTCTTAATAAATGCAGTAATACAGGGGCTTTTCAAGACTGAAGTCTAGCTGAGACAAATAGTGCGATTACGAAATTTTTTAGACAAAAATAGTCTACGAG # Right flank : CATTGCCGATGATAACTTGAGAAAGAAGGTTCATACCAGCAGTCGGATACCTTTCTATTCTTTCTTTTAAAGCGCTTTCATGTTATAATAGGTAAAAGAAGAGTAGAGTGATGGAACAAACATTTTTTATGATTAAGCCAGATGGGGTTAAGCGAGAGGGTTAGTTGGAGAGATTTTGCGGTGGATTGAACGCCTAAGATTTACGTTTGAGCGATTCGAGCTAAGACAAGCTAGTTCGAAATACTTGGCTAAGCACGACGAGACCTTGGTGATAAACCTTTTGATCCTAAACTTAAAGCTTACATGACAAGTGGTCCTGTTTTAATTGTGACACTTCTTGGGGACTAAGGTGGCTTTGTCTTTTTGAACCATGCATGATGAGAGTAACCAATCCTACGGATGCTCTTTGCGGAACCATTCGTGGGAATTTTGCTCAGGCTCTTAATGATGATGGAGGTGTTTTTAACATGGTGCATGGGTCTCATTCAAGAGACTCTGAT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:61.11%AT] # Reference repeat match prediction: F [matched GTTTTAGAGCTATGCTGTTTTGAATGGTCCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-2.00,-0.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-A/B/C [Matched known repeat from this family], // Array 1 45674-46111 **** Predicted by CRISPRDetect 2.4 *** >NZ_CAAHHO010000004.1 Streptococcus pyogenes strain K24357, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 45674 34 94.1 33 CA................................ TTTTGCAATTGACGAACAAGAGCGTTGTCAGTA 45741 34 100.0 33 .................................. ATATTAGCTTTTAGTACTTGAGGACTTGATTTC 45808 34 100.0 33 .................................. ATATTAGCTTTTAGTACTTGAGGACTTGATTTC 45875 34 100.0 34 .................................. ATAACCAAGTTTTGTATAAATATCACAATCAGTC 45943 34 100.0 33 .................................. ATTATTTTATTAAAGTTATCACGTAAATTTTGC 46010 34 94.1 34 AA................................ AGCTTTATACATTTCTTCGTCAGCTTGAGCATTT 46078 34 97.1 0 .................................G | ========== ====== ====== ====== ================================== ================================== ================== 7 34 97.9 34 TTGTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Left flank : CTAAGGCCATACGAGGAGATTTAGAAAGCTATCCACCTTTTATGGTTTAGGAGATGTTATATGATGGTTTTAGTCACTTATGATGTAAATACGGAAACACCTGCTGGTAGAAAAAGATTGCGTCATGTTGCCAAACTCTGTGTGGACTATGGGCAACGTGTTCAAAATTCTGTTTTTGAATGTTCTGTGACACCCGCAGAATTTGTGGATATAAAGCACCGCTTAACACAAATCATTGATGAGAAAACTGATAGTATTCGCTTTTATTTATTGGGGAAAAATTGGCAGAGGCGTGTGGAAACACTTGGTCGCTCAGACAGCTATGACCCAGATAAAGGTGTCTTATTATTGTAAAAATCTCTTGTGCGAAGCTAGCTTTCACAGAAAAACCTTGCTTGCTCGCGCAAAAATAACTTAAAAAAGAAGCGAAATGGAGATAAAAAGGCTTAAAACACCTCTATGTGTGCCATCTGTTTCTCTATAAACTGTGTCATTTGGCG # Right flank : GATGAACCCGACCTCTCTTTTAATGAGGTCGGGTTTTTACATGCCTTTAGTCAACCATTTATCTGATAGCGTATCAAATTCAAGTTTTTGCATGTTCTAGTCTATGGTTTGCGCCACTAGCTTTCGGTAAACTAAGGGTAACTTAAGAGAGGAGTTATTTATGACACTATCACTTGTATTAATGGTATCGGTTTTTGGGGCAGGCTTGTTATCATTTTTCTCTCCGTGTATCTTTCCGGTCCTTCCTGTCTATTTAGGCATTTTACTGGATGCAGATGATTCAAAGACGATTACTATATTTGGTAAAAAACTCTATTGGTATGGCATTGTCAAAACCTTAGCCTTTATTTTTGGTCTATCTACTATTTTTGTGATTTTAGGTTACGGGGCTGGTTTTTTAGGAAATATCCTTTATGCGGTATGGTTTCGGTACTTACTGGGAGCCTTGGTCATTATCTTGGGGATTCATCAGATGGGCCTCATTACCATTAAGAGCTTAC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TTGTCTCACCCTTCATGGGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.00,-9.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : NA //