Array 1 4019-55 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXT010000041.1 Erwinia amylovora strain 1581 Ea_1581_contig_41, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================================================== ================== 4018 29 100.0 32 ............................. GAGATAGCTAACATACTTAACTTATCGCCTAA 3957 29 100.0 32 ............................. GTGATAAGCGTACCCTGCAGACGGCAAATAAC 3896 29 100.0 32 ............................. CCAGCTCCAGTGCTACCGCAACGCCAGATTCA 3835 29 100.0 32 ............................. AGTAATTAATGATTCTGAAATCTCTCTTAATA 3774 29 100.0 32 ............................. TTTGGTGACAAAGGATGGGTGCGCGAGGAAAT 3713 29 100.0 32 ............................. AACGTAATCAGTGGGCTGATATGCACGGTCTG 3652 29 100.0 32 ............................. CCGCAGTGGTGTTGTGGTTCTTAGCAGGCCGA 3591 29 100.0 32 ............................. GGTGAGTGTTTAATACTTCCCCTTTGGAGGCA 3530 29 100.0 32 ............................. ACAAAAGACAACACCCCCCTTACCCCCCCACG 3469 29 100.0 32 ............................. CAGGTATTTCGGATAGCCGGTTGTCTCGGCGG 3408 29 100.0 32 ............................. TGAACGAGCGCGAGGCACCTGACGGTGCAGAC 3347 29 100.0 32 ............................. GTGGTGACCTCTTTGTGGGCGGCGTTTCTGGG 3286 29 100.0 32 ............................. ACTGAAATTTAAAATCACCGCTAACCCGCCAG 3225 29 100.0 32 ............................. GGCGATGAGGGAGTACGCGGAGCGGCAGGGTA 3164 29 100.0 32 ............................. AAAAGCCAACCGCCCGCCCGTAATAAACCTGA 3103 29 100.0 32 ............................. GTTGCAGAGACTTAAAGATCGTCTGCTAGTTA 3042 29 100.0 32 ............................. TAAATGGTTGTCCGTTCTTGGCGCAGACGGCT 2981 29 100.0 32 ............................. TAAAGGAGCATGCTTATACAACTGACAAAATC 2920 29 96.6 32 ...........A................. CGCAATTTTTAGACAATGCAGAATTTTATTTT 2859 29 100.0 32 ............................. GATAGGAGCAAGGCAACGCAAAATCCCGTGAA 2798 29 100.0 32 ............................. AATGTTTGTGTTAATTGGCTTTTCTGCCTCAA 2737 29 100.0 32 ............................. TTATAAAAGCGTTTATTTGTAATAATCGTAAT 2676 29 100.0 32 ............................. AGCCTGAATTGCCGGAGATATCTGATGTTGAC 2615 29 100.0 32 ............................. CGCTGAAATGTGAATCAGTGCGGTATTTAGCC 2554 29 100.0 32 ............................. CTCAATCAGGGGACTGATTCCGCGTTAATAAC 2493 29 100.0 32 ............................. ATAATAAAAAGGCCGCGCATAGCGACCTGTTG 2432 29 100.0 32 ............................. TCGGGTATAGTTCATCTCCCATTTTCCAACTA 2371 29 100.0 32 ............................. CTTCGAGATTAGAATATGACTCAGTACCACTA 2310 29 100.0 32 ............................. CTGTGTCAGGTTTCGCCACTTCTGACAGATTC 2249 29 100.0 32 ............................. GACTCTTAACTCATTCTGCCGCTTTCACGGTC 2188 29 100.0 32 ............................. AAAATGTTATAAGCCGTATTCCTTGCGGAACA 2127 29 100.0 32 ............................. GGTTGAATACCTTCAGGGATTTAGAGCTACCA 2066 29 100.0 32 ............................. ATAGTGCTCGACGTTAACGCGTGCGCCGTACA 2005 29 100.0 32 ............................. TACCAACTAGTACGGGTGATGCAGATCCGGTT 1944 29 100.0 32 ............................. TGTGTCCCTATGGGATGTGTTGCTTCAGATTC 1883 29 100.0 32 ............................. GCGGGTCATCTTCAGCTGATGACGCTGATACT 1822 29 100.0 32 ............................. TAGAGGTAGATGGAACATCTATTAAAATCTTC 1761 29 100.0 32 ............................. CGTATTGATCAGATACTTACACTTGGCCAGAT 1700 29 100.0 32 ............................. TCATCGCTGATACCTGTTCAGTAGTTAAAACA 1639 29 96.6 32 .......................G..... GCCAGTGCTATCAGCAGGAGATACGGAACCCC 1578 29 100.0 32 ............................. ATGCAACGTCAGCCCAGTCAAAAGAAATAGGA 1517 29 100.0 32 ............................. CCAATGACGCCGCAAAACTGCGCTCTATTTCA 1456 29 100.0 32 ............................. ATCTAGGTTTGCCGGTTTCAGGATCATCAGGA 1395 29 96.6 32 ............................A GTAGGGAAGAATAAAAATAGTTATGATGGAAA 1334 29 100.0 32 ............................. TTAATTTTATATTCATTTCTGCAGTCTCCAGC 1273 29 100.0 32 ............................. GCTCATCTGCGCACGATGAAAGTCAAAGGGTA 1212 29 100.0 32 ............................. GGGTTAAAAATGAACAAATCAACGCTTTTCAC 1151 29 100.0 32 ............................. CAAAATCGCCGCATAGCAAACCGCTCTTTAAA 1090 29 100.0 32 ............................. CAACAGTACGCGGGGTGCTGTTTATTCTGTCC 1029 29 100.0 32 ............................. CGATCAATGACTTTATGTTAGCCAGGGAAAAT 968 29 100.0 32 ............................. CCAACCAGCCGGCATTCAGTAGCCAGAATGCT 907 29 100.0 32 ............................. CGGCGGCTCACAGCCCCTACGGACGTCTGTTT 846 29 100.0 32 ............................. TTCACGCGCTCTTGTCTGCCACTCGTCAAGAC 785 29 100.0 32 ............................. CCATCGCAGATGTGGCAATCAACAACAGGCGA 724 29 100.0 32 ............................. GCAGAGCGAGGCGAGTCTGTTTACTTCACACA 663 29 100.0 32 ............................. GGGCATGCGCAGAGATTAAACGCTGGGTTTAT 602 29 100.0 32 ............................. GCCCGCAGGCAGGACGAGGAACGAACACGCAT 541 29 100.0 32 ............................. ATGTCGAACCTGTCGGCGTATCAACCGGGCTG 480 29 100.0 32 ............................. GTTGTCCTGTGGCTTGCTAAATTTGGATTCTC 419 29 100.0 32 ............................. ATATAAAATGAATGAATGGATCAGGGCCTATG 358 29 100.0 63 ............................. CCCTCGGGGAGGGCTTTGCGTTGTTACTCAGAGTGTTCCCGCTCTTTTGCGGCTTAGTGCGAA 266 29 100.0 32 ............................. GTCAATTATGGACGTACAGGTAGCAGCTACCC 205 29 100.0 32 ............................. CCGCGAAAATCCGCAGTGAGCTGGCAATGAGC 144 29 100.0 32 ............................. CCCAAAGGAACAACGAGAGCTATCCAAACCAA 83 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= =============================================================== ================== 65 29 99.8 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TGAGCGGGGATAAACCGGGCACCGCCAATCTTCTGGCCCCAGTGATTA # Right flank : GACCAAAGGCGACCATCAGGTAGAACTGGCCTTGCGTTCCCCGCGTGAGCAGGGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [1-1] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [35.0-35.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 9246-12021 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXT010000011.1 Erwinia amylovora strain 1581 Ea_1581_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 9246 29 100.0 32 ............................. CCCATTTCCCTGATTTTCCTGGGATTATTTCT 9307 29 100.0 32 ............................. CGGGCATTAGCGGCTTTGAAACGAGAACTGGA 9368 29 100.0 32 ............................. CACGATCACACTGTCAGCTAGATTTTATGATG 9429 29 100.0 32 ............................. AATATCTAGTGTTTATGCGTGCCTTTTCTGGC 9490 29 100.0 32 ............................. CAACTGAGCAACTCCGCTTTGCCCCATACCAA 9551 29 100.0 32 ............................. AAAGAAACTACCCCCAACCCCCTAACGGGTGT 9612 29 100.0 32 ............................. CGACTATTCGGCGAACTGAAAGAGCCAACCGT 9673 29 100.0 32 ............................. ACGCCGCCATTCGGATCCGGGGAGGATTCGGA 9734 29 100.0 32 ............................. AATGCCTCATACCTGGCGGCCAGCCTTCAGCG 9795 29 100.0 32 ............................. TACCGCCAGTGGGCCATTGCATCCGGCATGGC 9856 29 100.0 32 ............................. TAACTACGTCAGCGGTGTCCAGCATGACGGAA 9917 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 9978 29 100.0 32 ............................. GAGAGCAACAACAAACTCCGACCGGAGAAACC 10039 29 100.0 32 ............................. TACACTGCAGGCAGTACGGGAATGGTTAACCC 10100 29 100.0 32 ............................. GTTTCGGCGAGCGCGTATATGGTCACGTTCAC 10161 29 100.0 32 ............................. ACTTGACTGTTTATGCAGTGGTTGTATTTCTT 10222 29 100.0 33 ............................. ATCGGAACGACTTAGATTAGCGTCCTTGCACAT 10284 29 100.0 32 ............................. TAACCGCAACCATCGCCGCGATAAATCCACTG 10345 29 100.0 32 ............................. GTTGATACGGCTGATTACAATAAAATGTCACT 10406 29 100.0 32 ............................. TAAAAAATGCCGCCATCGAATCAGCAAAATCG 10467 29 100.0 32 ............................. CTGCGGAGCGTCAAACGGGCGTTAACTCTCGA 10528 29 100.0 32 ............................. CCCTTCTGGTGTTTTGATTCTCCTAGGTGATT 10589 29 100.0 32 ............................. ATGGCCCGCTAAATGTTGACATGTCTGGTCGG 10650 29 96.6 32 ............................T AATGGACGAGATTTCACAGAAAATATCTGTTC 10711 29 100.0 32 ............................. GCTACTACGTGTACGCACAGCCGCTGGCCAGT 10772 29 100.0 32 ............................. CAGATGAGGCTGCAAATTCCAGGCACTTTTTA 10833 29 100.0 32 ............................. GATGGTCGTACCGATGTTTGCGAAAGATTCGC 10894 29 100.0 32 ............................. ACGGTCAGATGGTGGCGCTGGTTGCGCTGGCA 10955 29 100.0 32 ............................. ATATTTACTAGCATTTCCCCATGCTGTATCAC 11016 29 100.0 32 ............................. CTGGAGCATGAGACGAAATCGGGGGTAGTGCT 11077 29 100.0 32 ............................. CCGGTTCAGGTTTGATAGGTTCTGCCTAACTC 11138 29 100.0 32 ............................. TTCGCATACGACAATCTCCCGGCACTGATTAA 11199 29 100.0 32 ............................. CGCGAGTACCCATCCATCCCCGCAGAGGCATT 11260 29 100.0 32 ............................. GCAGGGCCGGTTTACGTTGCGCAATCGGAGAT 11321 29 100.0 32 ............................. AGGGTGACGCAACGATTGTTGCAATTCCTAAC 11382 29 100.0 33 ............................. CACCAGTGTGTACATTCCAGACTCAGAAACCAC 11444 29 100.0 32 ............................. CCTCGAGGTGTTCTAAGCACTCCGGGGCTTTT 11505 29 100.0 32 ............................. GACGCTCAAATCAGTGGCGGCGAAACCCGACA 11566 29 100.0 32 ............................. CCAGAGGGGATTTAGCAAACGTCATTTCTGAC 11627 29 100.0 32 ............................. TCATCTGCGGGTCGGGTAGGCTGCTTACGGGT 11688 29 100.0 32 ............................. CAGCTATTCCCCGCATCGGTCAGTACTGCGCT 11749 29 100.0 32 ............................. TGGCCCACAATGGTAAAACCGGCGGCTTTCCA 11810 29 100.0 32 ............................. GCCAATGGATTCAGGATTGGAGCCAGAATTTA 11871 29 100.0 32 ............................. AAAAAAAGCCTAAAGCTCGAAAGAATAAAAAT 11932 29 96.6 32 .........A................... ATGATGGAGCTGATAGTTTTATTAGATGTCGA 11993 29 79.3 0 ...........AC..A.....C...T..A | ========== ====== ====== ====== ============================= ================================= ================== 46 29 99.4 32 GTGTTCCCCGCGTATGCGGGGATAAACCG # Left flank : CGGTTGCCATCCCTGAACCACAGTCTTTTGGCGATGTCGGGCACCGGAGTGCGTAATATGAGTATGCTGGTGGTGATCACTGAAAATGTTCCTCCCCGTCTGCGCGGACGTCTTGCCATATGGCTGCTGGAAGTGCGTGCGGGCGTGTACGTGGGTGACGTTTCGCGCCGCGTGCGGGAAATGATTTGGCAGCAGCTTAATCAGCTTTACGAGAATGGCAATGTGGCGATGGTATGGGCCACTAACAGCGAGTCGGGTTTTGAATTTCAGACGCTGGGTGAGAATCGCCGCCTGCCGGTGGATTTGGACGGTCTGCGGCTGGTGTCATTTTATCCCGTCTGACATGCAAACCGCGGCTTTTGACAGCAAAAAATCCGGTAGATTTTGACGGGTAAAAAAAGCCGTTATGGTTCAATGGTTTGTATCTAGAGTGTTCCCCGCGTATGCGNNGTATGCGGGGATAAACCGGCGGCGAAGAGACCGGAGCATGGGCTGTTGAA # Right flank : AATAATATGTTTAATGCCAGCCCGGCTTCGGTATTGCCTCGCCGGACTGAGCCTGGCTACATTACCGGTAAAAGAGGGTAACGCTAAGCAATTCACGGCGTGCCGTTCAGATCGCTGCCTGGTCGAATATCGCCCTGGGTTCGATTGTTAAAACCATGCAATACGTATTATTGGCAGATGCTAAGTGGGCCTCCTTTGAAACCAGCAACGAGACAGCTATTTTTGTAACGAAAAAGGTGTATTTGTCCGGTAAACCCCTCTTTGGCTTGCGGATCGATATATTTCCCGGTGCGTGGGTCACTGGTTAATGGCCCTGCTATTCTGAATGATTTAACGGTATTGACATTAATTGAGTCGTAATTGAAGTGGCGTTCAGTTTCGATAGTCCTTTCTGAAGAAAACTCATCTATTTTTCCCTGTGGACCATCAATTGATACTTGTGCGGAATACCTGTGTTCCTGTCCACCCCGATAGGTAAACCAGGTGCTGCGGCTGATCAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-46.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 21485-21813 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXT010000011.1 Erwinia amylovora strain 1581 Ea_1581_contig_11, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 21485 28 100.0 32 ............................ TTTACGTTTGCGTTAACAGTAAGCTCTGCAAC 21545 28 100.0 32 ............................ ATCGCACCCCACTGATTGAAGAGCAGCACACT 21605 28 89.3 32 ......C..T..........T....... TAGCAATAAATTCGATAGACGCTGATTTGCGT 21665 28 96.4 32 ...................T........ TGGCTTCAATTGCGGTCGGGTGTGATGCATCA 21725 28 96.4 33 ..........................G. GCCAACGTTCACTGTCATTTAGCCACGCTTCCG 21786 28 78.6 0 .....A........G.....T...TTG. | ========== ====== ====== ====== ============================ ================================= ================== 6 28 93.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : ATGGCGTTTAATATGGATAAACCGTCGTATGAGGTTAAGCGGGGCGTTTATGAGAAGTGGACGATCTCAGGCGAAGGCGATGAGATGCTGCATCCGTTCCATATTCACGGTACCCAGTTCCGCATCCTGTCGGAGAACGGCAAACCTCCTGCCGCGCATCGTAGCGGCTGGAAGGATACGGTACGTGTTGAAGGCTGGCGCAGCGAGGTGCTGGTGCGCTTTAACCACCAGGCAGACAGGGCACATGCCTATATGGCGCACTGCCATCTGCTGGAACATGAAGATAGCGGTATGATGCTTGGTTTTACCGTGGCGTAATAAATACAGACTGGCGTTATAGGATGGTTTTCGCCGGGTAACAGGCCTGTCTGGCGAACCCTTTTTTCTAAGATTTAACTTGTTGATTTCTAAAGCGTGATAATTCAACAGAAAAAAGGGTACAGCACGGTTAAGCTGGTAAAAAGTTAATGCGATAAGCCAGTTAGCCCGGTAATGTAACG # Right flank : AGGACTGAATGACTTCTCCCCTTGCCTGAAAGCATACTTTGCTTCACGGGCTTCTCATGCTGTGGACATTACGCTGACAGGCAGAAAACAGGTTATCCGTGGCACATCTCCGCTGGCGCCAGCGGCTTCACCGGTGCGCCTGACCTTACCTGTGCAGTGCGGTCTTACCGCCGTTGTATGCAGATATGATTAAGACGGTTGTTTCACTGCAATTAAATCAGCTAAATGTAAAATAAGAAAAACCCCCGGTTAAAGTTCTTAATTTGAGAGTATTAAGTGGGGGTTTTTCACGGTTTTTTTACAATAAAAAAAGAAAGATCTTATATTTTTTTTATGCTCATAATTTGGCTGTTGAACCTGTTTTTAAGCTATTTGAAATTTTTTTACTCAATAATTTCCAGAACTTTCATTTTGAGTTAGCCACTTTTTTTCTCTCCTTTTTCTTCGATAATGGTTCCGCATGCAGTGCAATTGACGTTTTTTGTATTGAATGAAATGCA # Questionable array : NO Score: 5.63 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-50.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 180257-181566 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAAEXT010000007.1 Erwinia amylovora strain 1581 Ea_1581_contig_7, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 180257 29 100.0 32 ............................. CCAGATGTGGACCTGAACTCTGGTAGTCACCA 180318 29 100.0 32 ............................. TTGAGCACGGTAACCCTCGCCACCCGGCAGCT 180379 29 100.0 32 ............................. CCAGTTAGGATGTCTCTTTCATGATTTATATA 180440 29 100.0 32 ............................. CCCGAGCCCATGTGCTAGTGCCGGTAAGAAAA 180501 29 100.0 32 ............................. GCGTCCTGGCCATCGAGTGCGTATATCCATGT 180562 29 100.0 32 ............................. CAACCAGTTTCGTTAGTTGTTTCTGGGATTAA 180623 29 100.0 32 ............................. GTTGAAAATTGACCATTACAAGAAATTTAAAA 180684 29 96.6 32 ............................C TTTTACGAATATGTCTTGTATCCCGGCTCTGG 180745 29 100.0 32 ............................. GGAAAAATTATCGAGCTGGCAAATAATAAAGG 180806 29 100.0 32 ............................. GATAATGCGGAGTTTTCGGGCACGCTAGAGGC 180867 29 100.0 32 ............................. GTGCAGAGATGCCGATATTGACAGATCCAATT 180928 29 100.0 32 ............................. CGCGATTGAAAGGGCTGTGGTTTATCGTGATG 180989 29 100.0 32 ............................. TTCCCATACCTTCACGGCCCGACACTTTGCGA 181050 29 100.0 32 ............................. CGCTTAATCAGCTCAACGCAGCGAAGGACGCT 181111 29 100.0 32 ............................. TCGCGGCAAAGCGCCTTTTGCCGCTGTATGGC 181172 29 100.0 32 ............................. GTGTTCTTCATCTGTATCCACTTCACCCACGC 181233 29 100.0 32 ............................. CTGAAAATGAGTGGTGGGCAGCCGGGAGTTAG 181294 29 100.0 32 ............................. AACTTACGGTGGCCTGGCTTGAACTTCCGGAC 181355 29 100.0 32 ............................. CCGGGCGAATGCGGGGATTGCAGGGGCAATGG 181416 29 100.0 32 ............................. GTATTTATAAACGATTCATTAATACGCTTATA 181477 29 100.0 32 ............................. CAGCAACCGGTGGTATTTTTCCGGGTCGGTTA 181538 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 22 29 99.7 32 GTGTTCCCCGCGTGAGCGGGGATAAACCG # Left flank : TTCCGCTAAGCATTGGCAGAGAGCGTTGCAGTGTATCACGCCGCGCGCTTCAACCCGGAAAAGCGTCCACGAAAAAGGCAGGGGCGGTTAACTCCCGGCCTTATTCGGGTGACTTCAACCCTTAAGGCGTCCGGTCGGTTGCTTAATAGCAACGATAATCAGCAAACTGACGTGCCGTATCTGCAACATCAGCAGGATTGCTCCCGGCGTTATCACTAGTATTGCCTTGATATAAGAGCGTGCGCGCAGCCTGTAAGTGCGAGCACGTAATGGTCGACAAAAATCAATCCGGTTTACAGGCCGGTTTTTTTCCGCCGCCACGCTGCCATTTCCGCTATATTCAAGAAGTTCACTTAGTCGATTACCCTTGTATTTGGCCGAGTATCAAGCCGACTTTTCCCGTTTTGAGTAGCAAATCCGTGCGTGCTTTAAAGTGGAAAAAAGTTGGTAGAATTGTAGGGGGGTAAAAAAATCACTAAGATCAGTCAGATAGTTTTAGA # Right flank : ATTACTGGTAGTAACTCAGCAGTATTCGGTACGTGTTCCCCGCGTGAGCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [5,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //