Array 1 164732-161773 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDN01000001.1 Salmonella enterica subsp. enterica serovar Colindale strain BCW_2661 NODE_1_length_424693_cov_7.68431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 164731 29 100.0 32 ............................. ATTGCAGTCAAAGTCGGCATCGTGTCACCGCC 164670 29 100.0 32 ............................. CTATCCGGGCGTTTACCGTGTGAGCGCCTCCA 164609 29 100.0 32 ............................. GGGGCTTCTCCGCCATCGTAGCGGATTTCAGA 164548 29 100.0 32 ............................. GTCCGGGCGACGTGGCGGCCGTGGTAGTACAT 164487 29 100.0 32 ............................. CCTCAGACGCTGGCATGGTTCCGTATGCCGTA 164426 29 100.0 32 ............................. CCGCGCAACGAGTGTTTTGCGAAACCGGCAAA 164365 29 100.0 32 ............................. GAATACAAATTCGTTGCCATCATCGCTTGCCG 164304 29 100.0 32 ............................. GCTGGACACCCCGCCGCATAAACGCGAGTCCA 164243 29 100.0 32 ............................. CTCTGACTCGTCATAATCACCCCATCTGGACG 164182 29 100.0 32 ............................. GCATCAACAAAAGTGATCGGCTATACAGTCAG 164121 29 100.0 32 ............................. AAACTTCCGTGGGAGGAAACGGACGGGCAAGT 164060 29 100.0 32 ............................. CGCCATATCAGCGTGGCGCGCTCTCCCGTTTA 163999 29 100.0 32 ............................. GGATCGCGATTTTGCCGATTACCGGGACGCTG 163938 29 100.0 32 ............................. AGCTGGCGGATCTGTTCGTCACTCAGGCGGGT 163877 29 100.0 32 ............................. CTGGACGGGCGCGTGCTGGGTAATTACCCGCT 163816 29 100.0 32 ............................. TGGATTGCGGAAGATGATGGGGTGCTTAACCC 163755 29 100.0 32 ............................. TTGGCTATTTACGACGCGGCACTGGCCCGTTG 163694 29 100.0 32 ............................. TGGGTTGACGGTGCCGTGATTGACGTTGCCGC 163633 29 100.0 32 ............................. GGGCTAAATTTGATAAGTGGGAACCGTCAAGG 163572 29 100.0 32 ............................. CTAAATACGGGCCATAGCGGCAGTATTACCAC 163511 29 100.0 32 ............................. GTATTAATTGACGTGGTGACGATGCGTCGTAA 163450 29 100.0 32 ............................. CCTTGTGTTGCTCTTTGAATTGCTGCGCCATA 163389 29 100.0 32 ............................. GCGTCTCCCCTGTAATTGTGACGCTGTCATCC 163328 29 100.0 32 ............................. GGCGTAATACATCATCACGCACAATGACCATC 163267 29 100.0 32 ............................. GCCGACATGCTTGGAGAAATAAGCGAAGGGCT 163206 29 100.0 32 ............................. ACTCGCTAAAGTTGCGCTCAACGCAAACAGCC 163145 29 100.0 32 ............................. TTGATATCCGCCTCAACTACTACGAGGGTGAA 163084 29 100.0 32 ............................. TTTCGTCGGAGCTGGTGGACGTACTGGAACAG 163023 29 100.0 32 ............................. AGACACAATACAGCGTATCCACCCCTGAAGAG 162962 29 100.0 32 ............................. CTGAGGTTGAGCCGCAAAAGATTGTGACTGAT 162901 29 100.0 32 ............................. TAGGCTTCTTTCAGCCTGGCGGCTCGTTTACC 162840 29 100.0 32 ............................. TAACTCACGTTTGCGAGCTTCCATCTGTGCCG 162779 29 96.6 32 .............T............... CCGCGCTGGGCCAGCCGCATAACGCTGGAAAT 162718 29 96.6 32 .............T............... TACGCCCCGAACGCGGGGCTGGCTGCTGACCA 162657 29 96.6 32 .............T............... GTAATCCGCGCTTACGATACAATGATGGTCGC 162596 29 96.6 33 .............T............... ACGACGAATGCAGCGCAGACTACTGGCGCTGAC 162534 29 96.6 32 .............T............... GCGCTATTCCTACCCCCACACCCCGATCCCCC 162473 29 96.6 32 .............T............... CCGCGCCTTATCGTCGTACATACCCGGCGGTA 162412 29 96.6 32 .............T............... AAAATTGTATCATGTTTGGATTGCTGACAGAT 162351 29 96.6 32 .............T............... GCTGAGTAGGAACACATATTAACCGGCCCTTC 162290 29 96.6 32 .............T............... CGAAAAAACGGGCGCTGCGGGTCATTTTCGAA 162229 29 100.0 32 ............................. ATCCGCGCCTTTCCACGCTTAAACGTTACGTA 162168 29 100.0 32 ............................. TTGTACTGATCATCTTCCAGCCCGGCAAACGC 162107 29 100.0 32 ............................. CGTTCTTCCAGCACATCCTGCGGCTGCACGAC 162046 29 100.0 32 ............................. TCACGCGGGCCCCCTTATTGGGTCGGGCAGGT 161985 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 161924 29 100.0 32 ............................. CGCTGATATTGTTCGCGCAGATCGTCGTACTG 161863 29 93.1 32 .........................GT.. AGGGGCGTTCCGCAGTCGGCAAGGGCTGAAAA 161802 29 93.1 0 A...........T................ | A [161775] ========== ====== ====== ====== ============================= ================================= ================== 49 29 99.1 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCATTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : TTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAATGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTTGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACTGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [51.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 182188-181001 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYDN01000001.1 Salmonella enterica subsp. enterica serovar Colindale strain BCW_2661 NODE_1_length_424693_cov_7.68431, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 182187 29 100.0 32 ............................. CCAGGCTGGTACTGTGCGCCATAAAGACGCCT 182126 29 100.0 32 ............................. CCGACCACAATCAGGGAACTGATCCAGCGTGG 182065 29 100.0 32 ............................. TTCAGATTGTCGCTTTTTGTTGCTGCCATTGC 182004 29 100.0 32 ............................. CGCATTATTAATGGCGTTGATGTTCTGGCGGG 181943 29 100.0 32 ............................. GTAATCAATCTCATATAGAGCGGGGGGGGGAT 181882 29 100.0 32 ............................. TTGATTGATCGTTATCAATGGGGAAAGAGATG 181821 29 100.0 32 ............................. TAATACCCGATCGAGCGCACTGTGTCGCCGGA 181760 29 100.0 32 ............................. TCCGGCAAAAATCCAGACCGACGGCGCAATGG 181699 29 100.0 32 ............................. TTAATTAATCATTTTGTTTAAATCCCGGATCA 181638 29 100.0 32 ............................. TGTTCGCGAACTGTTCACAAAATTGATTAAAT 181577 29 100.0 32 ............................. TACGGAAACATACGGCGCCCATTGCTTTTTCA 181516 29 100.0 32 ............................. CCTTATCAACTAATTCGTTCCTTGACACTCGT 181455 29 100.0 32 ............................. TACCGCGACACCGTCAACGACAGCAACCACTT 181394 29 100.0 32 ............................. CAGGTCACTAAAATTTGTAGGGTTATCCACAG 181333 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 181272 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 181211 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 181150 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 181089 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 181028 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 20 29 98.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACGGACGGCCTGCCGATGCCGTCTGTGACTTATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCGGATAAATTTTTCCATAGCGATGCATGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTAGTGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGATTAAGCCTGTTGGTCGAGGATGAGTCTACGTCGATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGATCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGACCCCTGCCGATTGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //