Array 1 158483-158690 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHLW010000003.1 Klebsiella oxytoca strain KO-16-21 NODE_3_length_280314_cov_91.080782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 158483 28 100.0 32 ............................ ATCCCCACGGAGGCCAGCGCCTCCCGGCTGTT 158543 28 100.0 32 ............................ CATCATGGCATCCCAGGCGCCGCTGGCAGCAT 158603 28 100.0 32 ............................ GGATGACCGATCGCATCGGCATTTTTGAATTG 158663 28 82.1 0 ............T.C.....T.C..T.. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 95.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CATCAGCAGCATGCTGGTGGCGAAAGGTCTGCCGGGCTTTATCGCTTATGGGGTTTTAGCTGGAGAAGTGGTTGCGCCATGTCTGCTGATTGTGGGGATCCTGACGCGCCCTGCGGCGCTGGTGCTGGCATTCACGATGGTTGTGGCCTGGCTGATGGTCGGGACGGGTAAAACCTTCGCGCTGGATGCGGTAGGCGCGTGGGCGATTGAGAGTCTGGTCTACTTCTTTGTTGGCGCGCTGGCGATTGCCTTCCTCGGGGCAGGCCGATATTCCATTGGCGGAAACTCGGCCTGGCGGTAAGTGCACCAGGATTTTCTGCCTCACCCTGGCCACATCCTGTTTGCCGGGGTGTCGCCGCTCGTTTTTCAGACCCTTTTTTGGGGAGGGTATTTTAAGATCTTGATTTTTTAATATTTTTATTGTTGTCACAAAAAAAGGGTAAAAGGGCCTTTTATTGATTATTGCATGATAAAACACTAAGGCAGGTGCGCGGGCTAGT # Right flank : AGAGCCATGCTACCCGACGATTACCGCGTAGCATGGCCAGCAACAACATTAAGCCAGTACCAAATCTCCCTGCGGCTGGCAGGAGCAGGCCAGCACGTAGCCTTCAGCGATTTCCGCATCGGTTAACGTCATGGTGCTGCTGACGGTATATTCACCGGAAACCACTTTCGTTTTGCAGCAGCCGCAAACGCCCGCGCGGCAGGCGACGGTAACCGGCACCTTATTGCTTTCCAGCGCTTCGAGCAGCGTGGTGCCGACCGGGGCATAAAACGTTTTCGCCGGCTGCAGTTTGGTGAACTTCAGACCGCTGGTGGCCGCGACGGCGACTGGCGTAAAGAACTGCTCTTTAAAGAAGCGCGTCGCGCCCAGCGCTTTCACTTCCTGCTCGACGAGATCCATATACGGCGCCGGACCGCAGGTCATCACGGTGCGCGATGCCAGATCCGGCACGCTTTGCAGTAGTTCAGTCGTTAAACGTCCTGCCACGAAACCGTGGGTAG # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.78, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.60,-9.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 171950-173779 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHLW010000003.1 Klebsiella oxytoca strain KO-16-21 NODE_3_length_280314_cov_91.080782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 171950 28 100.0 32 ............................ ACGTAATGAGCGCTCTGGCGGAAATGGAAAGA 172010 28 100.0 32 ............................ TACAAAAATTCCTTATAATCCGTCTACTAATG 172070 28 100.0 32 ............................ GAATTAACAAGAAGTTTATGGACGCGAGCCTA 172130 28 100.0 32 ............................ TTTAATGTTAAAGCGCTTGCTGTTGCATAGCT 172190 28 100.0 32 ............................ ATTTCACAATTAGGCGGTAATTCAATTTCTAG 172250 28 100.0 32 ............................ ATTCGGTGACCGCGTTTCGGAATCGTTGTCAG 172310 28 100.0 32 ............................ CCGACCGCGCCCAGCATGCCGCCGCCCTGATA 172370 28 100.0 32 ............................ TCATAAAAAAGGCCCGCATTTGCGAGCCTGTT 172430 28 100.0 32 ............................ GGAAAATATGACGGTATAGGTTTTGTATTAAC 172490 28 100.0 32 ............................ ACGTACATTACAAAACAGGGCGGCGTGATGAC 172550 28 100.0 32 ............................ GTAATGCGCCGGCGGTCGCGCTTGCGCATAAA 172610 28 100.0 32 ............................ GATGCTATAGCCGCAATGAATACCGGAAAATA 172670 28 100.0 32 ............................ TTTAATAATGATGTGTAGGCCATTACCAGAAG 172730 28 100.0 32 ............................ GTAACCGCATGTCGGCTTTTGCTGCATGGTGG 172790 28 100.0 32 ............................ TTCGGCCATACCGCGATACGACGCTTAACCAG 172850 28 100.0 33 ............................ TCGACGCGCTGGCCTCGCTGCTGATTTCTACGA 172911 28 100.0 32 ............................ TACCGGACAACGATCACCCATTGTCATGTAAC 172971 28 100.0 32 ............................ AATTACGACAGGGACGATACGAATTACTTCAC 173031 28 100.0 32 ............................ TGTAATGGCATCGGGAGGCTGTCATGTGGATA 173091 28 100.0 32 ............................ GGCTGCGTCGGGACCCACCACATCGCCAGCAG 173151 28 96.4 32 ........T................... CCTGGCCCCGGCAGTATCTATGATGGTCAGGG 173211 28 100.0 32 ............................ GGAAGAAATCACCGCCATGCTTACCGCAGGAG 173271 28 100.0 32 ............................ GGCAACTGGCAGAATACGCTGACCGGGCAGCA 173331 28 100.0 32 ............................ ATGCACCGGTAGAAGAACGCTGATCAATTGCC 173391 28 100.0 33 ............................ TGCGGCTGCACGACCAGCGTCAGGGAAATCACT 173452 28 100.0 32 ............................ CTCTTCGCGTCTGCGATACCGGAAACGGAGAC 173512 28 100.0 32 ............................ ATGCACCGGAAGAAGAACGCTGATCAATTGCC 173572 28 100.0 32 ............................ GTAAAGACGCTACCAGGCACATCGCTGAATAA 173632 28 96.4 32 ............G............... TCGACATCGCCGAGAGCGGCGTAGCCGTATAG 173692 28 92.9 32 ............G.......A....... TGCCCGCCGAGCCGGAAAGCGACAGCGGTAAA 173752 28 92.9 0 ....T.C..................... | ========== ====== ====== ====== ============================ ================================= ================== 31 28 99.3 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : GTTATCCACCAGGTGGTGGATAAGTTTATCGTTGAGCTGCAGGTCCAGCTGGATCAGAAAGGCGTCTCTTTGGAAGTAAGCCAGGAAGCCCGCGATTGGCTGGCCGAGAAAGGCTACGACCGGGCCATGGGCGCGCGTCCGATGGCGAGGGTGATTCAGGACAACCTGAAAAAACCGCTGGCTAACGAGCTGCTGTTTGGCTCACTGGTTGACGGCGGTCAGGTGATCGTTGAGCTGGACAAAGAGAAAAACGCGCTGACCTATGCCTTCCAGAGTGCGCAAAAGCACAAACCGGAAGCGGCACATTAAGTCGCTTGCGTGAAACGTCAAAACCGGCCTCAGGGCCGGTTTTTTTATGCCGATGTCCTGGACCCTTTTTTATTCCCCTTTTTTAAGCTATTGATTTTATTAAAGAGAAAATCTGGCGTGAAATTATGGTAGCAGAGAGGGGCTGTTGATTAATTTCAATGATAACAATATGGTAGGGTGTCGTTCGTTCA # Right flank : AAGAGCTTGCCCATACTGCGGTGCAGGCTAAAACGATTCTAAAGAATTTGCCAAAATAATAGGCTATTTTGCAATTTGCGATGAATGTCAACGTATTACCTCTAATATACTGTTTTTATAAACAGCTATCGACACTGAGCCACAGGATGTGACTATGCCCGCGAACTATATTGCCCCGTCGGATTTAAAAACGATTCTCCATTCGAAGCGCGCCAATATTTATTATCTGGAAAAGTGTCGGGTTCAGGTCAACGGCGGCCGCGTGGAATATGTTACGAGCGAGGGAAAAGAGTCATTTTACTGGAATATCCCAATAGCAAATACAACGGCTATTATGTTGGGAATGGGAACCTCCGTTAGCCAGGCTGCAATGCGTGAGTTTGCCCGAGCGGGCGTAATGGTCGGTTTTTGCGGTACGGATGGCACGCCTCTTTATGCCGCTAATGAAGTCGATATTGACGTTTCCTGGCTGTCCCCGCAAAGCGAATATCGACCAACTG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [58.3-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 3 182208-182715 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAIHLW010000003.1 Klebsiella oxytoca strain KO-16-21 NODE_3_length_280314_cov_91.080782, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 182208 28 100.0 32 ............................ TCGCCCCGCAGCGCCAGCCGTGCGGCCAGTAC 182268 28 100.0 32 ............................ GGAAGAGGAAGCCGGTTCCGTGCTGTCTACTG 182328 28 100.0 32 ............................ CGATTAACACCAAAATTTAATTGGTAATTAAA 182388 28 100.0 32 ............................ ATACTTTCCGGCGGCATGCTGCCCGGGCGCCA 182448 28 100.0 32 ............................ AGAATTCTGGTTATGAAGTAATCGGTGATTAC 182508 28 100.0 32 ............................ TCAAGCGGCGGGACCGGGCTGTAGCTGTAGCG 182568 28 100.0 32 ............................ TGGATATTCGCATCGCCAGAAAGATAATAAGC 182628 28 100.0 32 ............................ AACGGTGACGATACTCAAACTCTCTCACTCAC 182688 28 92.9 0 .........................TG. | ========== ====== ====== ====== ============================ ================================ ================== 9 28 99.2 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TACAAGGATGGCGTTGCGTCAGTCGGGTACAGGTAAAAAGCAGCCCCGAGCGGCTGATGCGCCGCTCGGTAAGAAAAGGCTGGCTGACGCAGGATGAAGCAAATGAGCGATTGCTTAGCATGCGGGGAGAGTCAACAGCGCTCCCCTGGTTGAATATGAAAAGCCTCTCCAATGGGCAGAAGTTTCCGCTATTTATTTGTCACGGTGAGCTGCTGGCGCAGCGCGTCGCGGGAACATTCAATAGCTATGGGCTGAGCCATATCGCGACTATCCCCTGGTTTTAGCATGTTGGTGAGAGTTTTTGACGAGTGCTAAAACAAACCATAACCGGCGCGGTCTTTCGCGCCGATTTTTCAATCGCTAATTAAAACCCTTTTTTATGATGAATCTCTATCTTATTGATTTTAGATAGTGATTTTATAAAAGTCGGAAAAAGGGTTGTGAAGAGGGGAAGGCGTTTTTTGGCTTTTTTATCAGATGGTTGTAGTGGTTAGGCTTCA # Right flank : ATCGTGGCGATTACGGGCGCAGAGACAGGGCCGTCAAAGCCGAAGAGGGAAGCGGCGTGAGAATAAAAGAAATGAAAAGACCGGGAATTATCCCGGCCTTCAGCATCTGGCGCGTTAAGCGCGAAAACGATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGCTCAACAGTCACTTTGTCGCCCGTCAGAATGCGGATGTAGTTTTTACGCATTTTACCGGAAATATGCGCAGTTACCACGTGACCGTTTTCCAGTTCTACGCGGAACATAGTGTTAGGCAGCGTATCAAGTACGGTGCCCTGCATTTCAATATTGTCTTCTTTGGCCATCTAGTCCTCTGGGGTATCACTACCGTAGTTTTGAACCGGCAAGATAATGCCGAAGTTCAGCAAGTATGTAAAGTTTTACGTCAAATCGCCGAAGTAGTTTTGGCGCATTGCCCGTAATTCACGCGGATAAACCGGGCGACAGGCGCAAACG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //