Array 1 13213-14464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWPY010000048.1 Ralstonia pseudosolanacearum strain Lallmahomed 72 IPO152-2017_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13213 29 100.0 32 ............................. ATTTGTGAGCGCCTCGCAGATGGGATGAGTCT 13274 29 100.0 32 ............................. CCTATGTTGCAGGATCAACCGGAGCAATGTCT 13335 29 96.6 32 ............................A GCCGAGACCCTGGCAGGCGGGCTCGAAACGCG 13396 29 100.0 32 ............................. AGGATGTCGATGATGACGGCTGGGCTTGGTTT 13457 29 100.0 32 ............................. TGCATAATAAACAATGTACTTAATACCTAACA 13518 29 100.0 32 ............................. TGACCGCAACGTACGGCGTCGCTTCTGGGCAG 13579 29 100.0 32 ............................. CGCGCAGATCGCGTTCTGCGCTTCGGCTTGCC 13640 29 100.0 32 ............................. CTGCCGCCCGGGTCGGACGTGACCCGCTTGTA 13701 29 100.0 32 ............................. TGCGTTGATCCGATCCTCGCTGCCTTCGGTCG 13762 29 100.0 32 ............................. CGGTCGGATCCATACCACTTTCTGACATGAGC 13823 29 100.0 32 ............................. GGATTACATGCCCACAATTGACCAATTATCGG 13884 29 100.0 32 ............................. CATGTAGAAGCAATTATCAAATTGCGGAACAC 13945 29 100.0 32 ............................. CCGGGTCAGTCACGGCTAAGAGAGAGACAGGG 14006 29 100.0 32 ............................. CCGAGGGCATGCGTCAATACCTGAACAGCCAA 14067 29 100.0 32 ............................. ATTCCCCATCCCTTTTTTTCGACTACTTGCGC 14128 29 100.0 32 ............................. CATCAATCAGACGCGAGCACAGGATTTCCGCT 14189 29 100.0 32 ............................. TCGCAGAACACCCCGCCTCCACGCACCGAGAC 14250 29 100.0 32 ............................. ATGCAGGGCGGCGCGTTTTTCCGCCAGCTGTT 14311 29 100.0 32 ............................. TTGACCAGGGTGTTGGCCAAGCGCTTGGCCAT 14372 29 100.0 32 ............................. GGATGATGTCCAGGAGGTATTTGATTCGATTA 14433 29 86.2 0 ............CA..........T...A | A,TC [14456,14458] ========== ====== ====== ====== ============================= ================================ ================== 21 29 99.2 32 GTGTTCCCCGCGTGTGCGGGGATGAACCG # Left flank : CGTGCGGCAGTATCCGCAATACGAGCGCATCGGCCTGCGCGAGCTGTGCGACGCCATCCACAGCGTCTACAAGGCCAACGACGTGGCCCGCGTGACCACCGAGATGTACCTCTCCAACATGGAGCCGGCGATGAAGCCGTCGGACGCATGGGCCAAGATGGCGCACCGCGAGACCGAGCGCGTGGCCATCGACGACCTGGAGGGCCGCATCACCGCCATCCTGCTGACGCCGTATCCGCCGGGCATTCCGCTGCTGATCCCGGGCGAGCGCTTCAACCGGACCATCGTGCAGTACCTGCAGTTCGCGCGCGAGTTCAACAAGCTGTTCCCCGGCTTTGAGACCGATATCCACGGGCTGGTGGAGGAGGAGATTGAGGGTCGGGTTGGGTACTTTGTTGATTGCGTGCGGTAGGGCGTTGTCGCGAGCTTTTGTCCGGTGGTAGATCGGTAGATTTTTTGGGGCCGGATTTTTGCTTTTGGATCAGGGGTTTGCGGTAAGT # Right flank : AACCAGCCCCAGTTCGTGCGCTGCCTGCAGGGACCAAAGAAAGTCCGCAGATTAATCCCTTTCTAATCCATCAATTGGATAGTCTTTATATCTACTGAAGTCACCCAAGAAAATCAAAATAAATACCCGCAAGACTGCTACGATCCCCTGCTCGGGAGCAGGCACAGATTGTCAATTCATTGGCATCAAGAACATGCATCAGGCTGACATGGGGAAAGGGGGGGTGCGATACTTTGCGTATTGGGGCAAGGCACGCATGCAGGAAGGTGCCGGCCAGCGATATCACCTGCTTGCCTTTCATGCACTGGATGTCGCGGCCTGCGGGGTGGAGTTGCTGCGACTGCCCCGGTTTACTCTTGCGCCGCTGGCTACGGAACTTGGCTGGCCATTGCAGGCCGTCAACAAAATATTCGCGTGGTTCCTCGCGCTGCACGATCTTGGCAAGTTTGCGCGCGCTTTTCAAAATCTGGCGCCAGGGTTATCTCCCGATCTCGTCTCTC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTGTGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTGTGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [55.0-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.78 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 23830-25203 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACWPY010000048.1 Ralstonia pseudosolanacearum strain Lallmahomed 72 IPO152-2017_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 23830 29 100.0 32 ............................. TGGCTCCACCAGCATCTACCCATACCTCAGTA 23891 29 100.0 32 ............................. TACGCTGTGCCCCGCGCCGGTCTTGCATGAAG 23952 29 100.0 32 ............................. CCGCTCAGGATGGATTGCCATTTTCTGTTAAC 24013 29 100.0 32 ............................. ATTTCAACATCGGTATGGAGGCAGCGATTCAG 24074 29 100.0 32 ............................. CCATCACCCGCGCCAGCGCCGCGACGGTGGCC 24135 29 100.0 32 ............................. ATCAGTGGTGGATTCCGTGGGGAGTGGCTGGA 24196 29 100.0 32 ............................. CCGAACCTGCAGTCCATGCGCCCGCTGGGTCA 24257 29 100.0 32 ............................. GCGTCAACGTCCCAGCCAGGCGGTACATGATG 24318 29 100.0 32 ............................. GCGCCGCCCGCAGGACCGTCGCGGGCGGACGG 24379 29 100.0 32 ............................. TTTCGCGTGTCCGGCCGGGGATTTCTTGTCGT 24440 29 96.6 32 ............................T ACAATGGGCTCGTATAGAACGTTTGACTCCCT 24501 29 100.0 33 ............................. CACGTCAGACGGAATGCGGTGCCACAACCTGGG 24563 29 100.0 32 ............................. ATTTCTGCACCTCACGAACGCAGACCAGATCA 24624 29 100.0 32 ............................. GCCACCCGCAGCGCTTCCTCTGGGTCGTCCCA 24685 29 100.0 32 ............................. TCGCTGGTGCAGGCGCCCCCGATGATGGTCGC 24746 29 96.6 32 ......T...................... GTGTTCGCTACCACGCTAATTGCCCGAGGCGT 24807 29 100.0 32 ............................. TCATCCCGGCCGGTAGCACTATCCGTGTAGAG 24868 29 100.0 32 ............................. CGCGGCAGCTCCACGAGGATGCGCGGATGGTC 24929 29 100.0 32 ............................. CAAACGAGTCTCGATAAGGTCCCTGTGCTCGA 24990 29 100.0 32 ............................. ACCCGCAAGACGCTCACGGCGGACCAGAAAAG 25051 29 96.6 33 .................A........... GGGGATGCGCGGCGTCTGTTTGTGCGGTTGGCC 25113 29 86.2 32 A.......T.........A..G....... GCTTAGTCGCTGAAGCTTGTCCAGATGATCGT 25174 29 86.2 0 ............C..........ACC... | T [25188] ========== ====== ====== ====== ============================= ================================= ================== 23 29 98.4 32 GTGTTCCCCGCGTATGCGGGGATGAACCG # Left flank : TCGCATCATCCCCGCCATCGAGGAGGTGCTCGCAGCGGGCGGCATCTCGCCTCCGGAGGCCCCCCCGGAATCCGTGCCTCCCGCCATTCCCAATGCCGAGCAGCTCGGCGATGCCGGCCACAGGGTGCAGGGATGAGCTTTGTCGTGGTGGTCACCGAAGATGTCCCCCCGCGCTTGCGCGGACGGCTCGCCATCTGGCTGCTGGAGGTGCGGGCCGGCGTGTACATCGGCGACGTCTCGCGGCGCACGCGCGAAATGCTCTGGGAGCAACTGGTCGAAGGGCGTGAAGACGGCAACGTCGTCATGGCCTGGGCCAGCCCGCACGAATCGGGCTATGAATTCCAGACACTGGGCGCCAACCGCCGGCTTCCAGTCGAATTCGACGGGCTGCAGCTCGTAGCCTTTCAGCCGGCGGACAAACCTGTTCTTTGACAACGCGAACGATCGGTACCTTTTCGGTGGTGGAATTTTCGCTTCCTAATCAATAGGTTGGGTTAAGT # Right flank : GCCGACTCCGCCGCAGGACAGGATCAGCCCGCCAGCCCAGCCCGCGCCGCAACAATCGCCAGCCTCACCTGCTCCGGCGCCGTCCCGCCGATATGGTTGCGCGAAGCAACCGAGCCTTCCAACGTCAGCACGGCGTGCACGTCGTCGCCGATCAGGTTCGCCTTGTCGCCCAGGCCGCTGATCTCGCGCAGCTGCGCCACCGACAGGTCGGCCAGGTCGCAGCGCAGGTCGTCGCAGGCGCGCACGGCGTGGGCCACGGCTTCGTGCGCGTCGCGGAAGGGCAGGCCGCGCTTGACCAGGTAGTCGGCCAGGTCGGTGGCGGTGGCGTAGCCCTGCAGGGCGGCGGCGCGCATGGCGTCGGCCTTGACCGTGATGCCGGGCACCATATCGGCGAAGATGCGCAGCGTGTCGACCACCGTGTCGACCGTGTCGAACAGCGGTTCCTTGTCTTCCTGGTTGTCCTTGTTGTAGGCCAGCGGCTGGCCCTTCATCAGCGTAAG # Questionable array : NO Score: 6.18 # Score Detail : 1:0, 2:3, 3:0, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGTATGCGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGTATGCGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-25.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //