Array 1 89478-88980 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJVL01000060.1 Sphingobium sp. AP49 PMI04_contig383.383, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 89477 36 100.0 31 .................................... CTCGACATGGGGGAGCCGTTCAAGGCGCAGC 89410 36 100.0 30 .................................... CGGCGACGCCATCGGCTACGACGCCAAGGC 89344 36 100.0 30 .................................... TTCGCTGCGATCAAGCCAGCGATCATCCGA 89278 36 100.0 30 .................................... TTGAGGCGAATTTCAAGATCAACGCGCTGG 89212 36 100.0 30 .................................... CCTTTTGAGCGTCGAGGACGCCGGGATAAG 89146 36 100.0 29 .................................... CTCGTGCTGGCTAACGCTTCCCGCATGTC 89081 36 100.0 30 .................................... TAGGCCATGCGTCACCCCAGGACCGGCGCT 89015 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 8 36 100.0 30 GTTGCCGCTGGACCGCGATCTCTGAGCGGCTATGAT # Left flank : ATCTCTGAGCGGCTATGATTCCGCCGTCCAGCCGCGCAACATGCGGCA # Right flank : CGAACCATGGATAATGTATTGAAAAGCAATGCAATATCCATGGTTCTATCACTGTGAAAATCAGGCAAATCGCTAGAATAGAGCCAGCTGATCCGGATTTTTCCGTTGCCGCCGCCGGCGCTGTCCTGAAAATCGCACGATATTTTCATATTGCCGATCCGTGAAGCTGAGGATGTGAACATCACCACGATCGGGCAGGCTCGACTCGACCCGCCGCATATAGGTTTCGAACTGTTCCTTGCCGTTGCAAAAGCGAGCATAGACCGAAAACTGACTCTTCTCAAAGCCTTCATCCAGCAGGAACTCCCGGAATTTCGTGGCGGCGCGCGCCTGTTCCCTAGTTGTTACGGGCAAGTCGAACATCACGAAAATCCACATCAGCCGATATCCGCTCAATTGGCTCGCGCTCATGGTAGCAATGCGTCGAGTCCGGCCAGTTCCAGCGCGGAAGGTGGGGAGGGAAGTACAATGTCTCCCGCCTGCCCGCTTTCAAAGGCACG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCGCTGGACCGCGATCTCTGAGCGGCTATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATGAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-6.70] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [65.0-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,4.5 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 2066-49 **** Predicted by CRISPRDetect 2.4 *** >NZ_AJVL01000076.1 Sphingobium sp. AP49 PMI04_contig399.399, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 2065 36 88.9 30 .C.T..CA............................ CCCGGCATGCAGGGTTCGCGCCTGCGCCTG 1999 36 97.2 30 ...........................A........ CTCGCTGAAGATCACGAAGTCCTGCGTCTC 1933 36 97.2 31 ...........................A........ TGTCGCTGGCGGTCAGCACCTGCGCGCCGCG 1866 36 100.0 30 .................................... TTGGCCCAGGCGCGGAACAGCTCATGCAGA 1800 36 100.0 30 .................................... TGCGGGCACCTATGTGGTCATGGCCGTGCT 1734 36 100.0 30 .................................... CTTCTGTGTGATAGCCCGCGTCAACACATT 1668 36 100.0 30 .................................... AACGCCGGGCCAGTGCGATCCGTTCGGTGG 1602 36 100.0 30 .................................... AGGTCGCGTCCTCACCGAAGCGCCGGAACA 1536 36 100.0 30 .................................... CGCCCGCTGCGCCCAGCTGATCAGCTGCTC 1470 36 100.0 30 .................................... GAAGCGCACGCCGGGCAGCCGCACCAGATC 1404 36 100.0 29 .................................... TCCATCGATACGATGCGGTTGGGGATCGT 1339 36 100.0 30 .................................... CGCGCGCTCGTTCGCTGCGGGGCTTTTTGT 1273 36 100.0 30 .................................... GCAAAAGAACCATGGACGCTGACATCGGGA 1207 36 100.0 30 .................................... GCTCGACAGCTTATAGTCGCTCCCCCAGCG 1141 36 100.0 30 .................................... CACTACGGCAGCGCTGGCTGCAGCGTCTTC 1075 36 100.0 30 .................................... ATACTCACCCGTGCTGTCATAATTAAGCAC 1009 36 100.0 30 .................................... CTGGGCGGCCTATAAGCGTGATCGCGAAAA 943 36 100.0 30 .................................... AGATTGCCCAGATGCTGGCGCAGCCGGTTG 877 36 100.0 30 .................................... CAGCAGTTGCAGAGCGCCGTCGACTTCCTG 811 36 100.0 30 .................................... GGGCGACGCGATTGCGGCGATGGCCAGTAG 745 36 100.0 30 .................................... ACAAGGGCTGGCAGGCCCGTGAGCTGGGCG 679 36 100.0 30 .................................... GGCCGCGATCAGCGCCTGCGTCACGCTCGC 613 36 100.0 30 .................................... TCTGGCGACGGTGATCGATCGGTTCGACGC 547 36 100.0 30 .................................... CCAGCGCGGCCTTGAGCGTGCCGCCCGTGC 481 36 100.0 31 .................................... TGTTGTGCAGTGCGCCCATGAAGTATTCCAG 414 36 100.0 30 .................................... TCAGGCGCACCGCGACGCGCAGCTCCACCA 348 36 100.0 30 .................................... CTTTTCGACCGCGCTGCGTGGCCGGGCCGA 282 36 100.0 30 .................................... CGACCAGATCTGATCGCGCGGCGGCGGCGT 216 36 100.0 30 .................................... CATCCTGCAGATCCTGACCGTCGCCGGCGA 150 36 100.0 30 .................................... CCAGGGCGCGAGGGCGTGGGGCGAGAATGG 84 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 31 36 99.5 30 GTTGCCGCTGGACCGCGATCTCTGAGCGGCTATGAT # Left flank : CGCCTTTCGCAAGGCCGATTCGGAATTGGGACAGGCGATACTTGGCGCGCCACGCGATCGGCGGCTGTGGGTTGCGGGGCGTGCGAAGATGGATGACTGGGGCAGTCGCCCGGCTGCGGAACTGCATCTGGAGGATGCGGCCTGGGCGGATTAAGCACGATTGCAATTTTCTTGCGCAAAGGGGGTTGACCGTTTCGCTGTCCCCGCCTAATTGCGCCCTCGCTTCGCAGCGCTGCCCATGAGCGGCGGCAACGAGCGGCCCCTTCGTCTAGCGGTTAGGACGCGGCCCTTTCACGGCTGAAACACGGGTTCGATTCCCGTAGGGGTCACCAATCAAGCGACATTTCGCTTTGATTGTGGCTGATTTTTCGAAATTGTAGCAAATATCATCCCCTGTGCGTTTTCGCATTTCGGGCACACACACGCATTTTCGCGATGGCTCGACTCGCCGCAATAGGCAGGCAACTTCTCGCTAATGAAGCATTGGGCGATTTACGGCT # Right flank : TCGCGGCATCCCTTGCTCCAGTCGCCGTCGCGTTGCCGCTGGACCGCGA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCCGCTGGACCGCGATCTCTGAGCGGCTATGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTGCCGCTGGACCGCGATCTCTGAGCGGTTATGAT with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-6.80,-6.70] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [21.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.77 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //