Array 1 28071-31274 **** Predicted by CRISPRDetect 2.4 *** >NZ_MVIV01000001.1 Actinomyces gaoshouyii strain pika_113 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================== ================== 28071 28 100.0 33 ............................ GCGCCGCCTTCTTAATGCCTGGCGCCTTGATCA 28132 28 100.0 33 ............................ TTCACCGCGAAGTTATTCAGGCGGGTCTTGAGG 28193 28 100.0 33 ............................ GCATTCATTGACGCCGAGGGGCAGCCGTCAACG 28254 28 100.0 33 ............................ GCTGATTGATAAGCCTACCTAATTCAAGTTTCC 28315 28 100.0 33 ............................ GGAGATTGTCCGCGAGCCAGCCGAGCAAATGCT 28376 28 100.0 33 ............................ CCTTGGTGTCGACCGTCAGATTCGCTAGGGTCG 28437 28 100.0 33 ............................ GGAGCCCCCCATGGTCACCCACGCATGGATCGC 28498 28 100.0 33 ............................ GAACTGCTGGTCAACCAGGGTGACACGCTTCTC 28559 28 100.0 33 ............................ GGCCCACTCGCTATCATCGGCCGCACCCGAGAC 28620 28 100.0 33 ............................ GGAGCCATTTCCTGAGGCTGCTGGGGTCGGCGG 28681 28 100.0 33 ............................ CCTCATGCGCTACCTCATCGAGCGCTGCCCCCC 28742 28 100.0 33 ............................ CTCGAAGTCGTGGTCATCTGCTCGGATGAGGGT 28803 28 100.0 33 ............................ GCGCTCCGTGCGGCTCTCACGGACACGCCCCTC 28864 28 100.0 33 ............................ GCGCGCGGGGACGTGTGCCGGGTCCGCTACAGG 28925 28 100.0 33 ............................ GGGTACCGAGGTGACCGTCACCGGCCGCCCCCG 28986 28 100.0 33 ............................ GGTTTTGCCGGAGCGGATGGCGCCGTCGAGGAT 29047 28 100.0 33 ............................ GCAAAAAAACGCGAATTCACCGGCCTCTGGTAC 29108 28 100.0 33 ............................ CGGCACCGTGGACATGGCAGCCTGGCGATCCAT 29169 28 100.0 33 ............................ CTCGAAATCGGGGTCATCTGCTCGGATGAGGGT 29230 28 100.0 34 ............................ ACAGGGGGCAGGCGTCCACGATGATCACGGGGGC 29292 28 100.0 33 ............................ CGTCCCCAGTTTCGCCCACAGGGCTTCGGAGGC 29353 28 100.0 33 ............................ GCGGACTGGCGGGCCACGTGGCGCAACTGGATC 29414 28 100.0 33 ............................ CTATCTCTGCCGCCTCGATGGCGACAGCTCAGC 29475 28 100.0 33 ............................ TCGCACATCACGCCCAACCCTCCTCATCTTCCA 29536 28 100.0 33 ............................ GGACGCGGCCGTCCCCGGCGGCGGCAACAGCCT 29597 28 100.0 33 ............................ GGTTGCGGAGGCTCAGGAGACACCAGGATCCCC 29658 28 100.0 33 ............................ GTCTTGGGTGCTCGATTGGCTCTGGTAGGCGAT 29719 28 100.0 33 ............................ CCTTACCGATCGGCTCGGCCCCGTCGGCATCAC 29780 28 100.0 33 ............................ TGGCGACGTCGCGCCTGGCTCGGGCGGCGGTGA 29841 28 100.0 33 ............................ TGCGGGCACGGGCCATGCTGCGGCCGTGTGCGC 29902 28 100.0 33 ............................ CCCATACAAGGTGATCCGCAATCCGCACGCCGC 29963 28 100.0 33 ............................ GCCGGAGTTCTGGACGAGCGACGACATCGCCGC 30024 28 100.0 34 ............................ CCAGGGGAGTCTGGTGTCGCCACTGCCACCCATA 30086 28 100.0 33 ............................ TGCGCGGGCAGCTTGCCGGGGGACGACGCCGTT 30147 28 100.0 33 ............................ GGAGGACTGACCCATGGCAGACGCCGCGACCAC 30208 28 100.0 33 ............................ CCCGAGCGTGATCGGCTCGGTCGACGTGATGAC 30269 28 100.0 33 ............................ TTACGGTAGGGGACGCCGTGCGTCGCAAACGAC 30330 28 100.0 33 ............................ CGTCAGCACTCAGATCGTTGGGGGCGCCGGCGG 30391 28 100.0 33 ............................ GATTCCGGCGGATACGACCACGGAGAAGCGTGT 30452 28 100.0 33 ............................ GATCCCTGACGCGGGGCAGGTCTGCTCCCACCC 30513 28 100.0 33 ............................ TGGCCGACAACCCCGCCCTATCCCAAGAATACG 30574 28 100.0 34 ............................ TGGTCCCGGCGCCCATGGGACGGGCGCCCCGAAC 30636 28 100.0 34 ............................ TTGTTGCGGACGCGCACCCCAGCCTGCACATCAG 30698 28 100.0 33 ............................ CATCACCGCAGAAGCCGCCGCGCTGGATGTGGA 30759 28 100.0 33 ............................ GAACTGCTGGTCAACCAGGGTGACACGCTTCTC 30820 28 100.0 33 ............................ CCAAGGGATCCGGGTGTCTCCCGAGCCGCCGTG 30881 28 100.0 33 ............................ CGGGATCTCGGGATACGCTGAGGGCGGCCAGTG 30942 28 96.4 33 ..........T................. CAAAGTCCCGCCGTCCGCTGCCGTCCTCGGTCC 31003 28 96.4 33 ..........T................. GGTCACCCCGTAGCGCTTCAGACTCTTCTCCAA 31064 28 96.4 33 ..........T................. GGAGAACTGCATCGCCTGCCAGATGACCGAGCG 31125 28 92.9 33 .C........T................. GTGGTCAGTTCTCCGTACGACGCCAGAAGCGTG 31186 28 92.9 33 ...T......T................. CCTCGACCGCCAGATCGAGGCGCTCGGGGCCCT 31247 28 92.9 0 .C.....................A.... | ========== ====== ====== ====== ============================ ================================== ================== 53 28 99.4 33 GTGCACCCCGCGTATGCGGGGATGATCC # Left flank : CGTCTCCGGCGGGGCGAACTACGCCGCGATCGGAGTAGAGGAGGCAGGTGGATGGTAGTTCTGGTTCTCACCGCCGCTCCCGCGCAGTTGCGCGGCTCGCTCACGCGCTGGTTGATGGAGGTCTCCCCCGGAGTGTTCGTCGGGCATCTCGCCGCCCGAGTGCGCGAGCAACTATGGGACCTGGTCAGGGCGTATATCGGTGACGGTCGCGCACTCCTCATTTGGTCCACGCGGTCGGAGCAACATTTCTCTGTGGCCTCGCTCGGCCACGATCGGGAACCTGCGGATTTCGAGGGCTGCCTAGTGATGCGGACCCCGTACCGAGCAATCGAAGGATCGCAGGTGACCCCCGGAGCCGCGAGGCCGGCGAAGGAGTCGTGGTCCATTGCCGCTCGTCGACGCCGCTACAGGAACTCGGCGGAACGGGCTCTAGGTGGGGAGTGAAGGCAAAAGGTTTCAGATAGATTACAATGCCGTTGGGGTCTCAAGGATTGCCAAGT # Right flank : CCGAGCCAGAGCACGAGCGACACCTTAGCGGCCCGGACGCCTGGACTCATATATGGATGCGTGGTGGTCAACTGACGGCAGCCATGTCAATGACCAGGTTGACCTCCAGCGCACGAACGATGCGCCGGAGCATGAGAACTGAAATAACCCGGCCGCCGTTCTCGACGGCGAAGATGACTGACTGCCAGGAGCCTATGCAGTCGACCAACTCGGCCTGGGTCAGTCCGGCGCGCAAGCCGTGTGGACGCACCCGGCGAGCTGGAGGCGGATCCCCTCTTCGGCCTGGGTAACGTCAGAACAGGCCCGTTCGTCGGGACACGGCAGCCAGAGCCCCGAACTCGACCAGCCCCTGAGCAGTATCACCCTCATAATCACTCCGCCTCCCCTCTAGCTTACTTTTCCCTCGCCCTGCCGCCTGGGCCGTCGGCTCGACCCCACCTGGGCTCGGCGGTGAAGCCGGGTCCAGCGACACCGGATCCGTCGGCGAGCTCGATGAGGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCACCCCGCGTATGCGGGGATGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGAATGCGGGGATGATCC with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [55.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //