Array 1 431-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHST01000228.1 Pseudomonas aeruginosa strain PA19 contig_21718_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 430 30 100.0 39 .............................. CGGACGCCCTTCGGGCCGAGGAGGATCACCTTGAACCGT 361 30 100.0 37 .............................. TTGCGCGGCTGGCCGCCGGCGGCCTGGCTGTGGTGGT 294 30 100.0 35 .............................. ATCTGCCACCGCGCCGAACTGGTGCTGCAGACCGT 229 30 100.0 36 .............................. GCGTGCTGCGCGAAACCCCGAAAGCGCACATCGTGT 163 30 100.0 36 .............................. TATCGCCAGTGAAAACCAGTTTCCACACTGTTCCGT 97 30 100.0 37 .............................. AGCGCGAAATCCCCGTTGGGAGAGAGTTTCACCCTGT 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 7 30 100.0 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : C # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,9.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 300-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHST01000037.1 Pseudomonas aeruginosa strain PA19 contig_127_03, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ======================================= ================== 299 30 100.0 39 .............................. ACTTTATTGCCAGGGCGAGACGACAGCGAGCGGGCTGGT 230 30 100.0 37 .............................. ACCGTCGAGTTGCGTGATGGCAACAGCGTGACGGGGT 163 30 100.0 36 .............................. TCTTCGCATCTGGCGATCCGCGCGGCGAACCGAAGT 97 30 100.0 37 .............................. TGGTCTGGTGGATTCCTGGCACGAAGGTGTGCTGGGT 30 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ======================================= ================== 5 30 100.0 38 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : CATTTCTGTGGAAGTGAGGTGGCGACATGATGGTTCTGGTCAGCTATGACGTGAGCACTCAAGATGCTGCAGGTGGCAAGCGCTTGCGCCGCCTGGCCAAGGCCTGCCGCGATTATGGGCAGCGAGTGCAATACTCGGTGTTCGAGATCGAGGTGGATAGCGCGCAGTGGACATTCCTTAAGCATCGTCTGTGCAACCTAATCAATCCGGAACAAGACAGTCTACGTTTCTACTACTTGGGTACGAACTGGCAGCATCGTGTGGAGCATGTTGGGGCCAAGGTTGTACTCGACCTTAATGGCCCGCTGATTCTTTAGCGCCGGCGCGAACCTAAAGCGACCGACCAAACCCTGGGGGGTTCGCAATTCTCTAGCTGATTGATTTATAAACTCTTTCTTTGAAGTTAGGAGTTTGAAGGCGCGCGCCTTGCTTAAAGAAGGCATGTTTCGCTGAAGTAAGAGGTTTTTTTCATGCTGATCAATAAGTTATAAGAGGGCGGT # Right flank : C # Questionable array : NO Score: 9.06 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.20,-8.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1-556 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHST01000057.1 Pseudomonas aeruginosa strain PA19 contig_925_84, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 1 30 100.0 36 .............................. CAAGTCAGGCCGAAGAAAGAGACGATATAGCTGGGT 67 30 100.0 36 .............................. ACCTCGCCGGTGCGCAGATCGAAAACGCCGGTAGGT 133 30 100.0 36 .............................. GATCCGTTCTTCATGGCGGTCGTCAAGGAGATAGGT 199 30 100.0 35 .............................. AGCGGCTCATGGCTCCTGCTGTTGCGGAACCCTGT 264 30 100.0 36 .............................. CTTCTTGAGATTGTCGAAGACGAATCCCCACTTGGT 330 30 100.0 36 .............................. GGCTACACGTTCTTCGCACCCTCGTTAGAGGAAGGT 396 30 100.0 36 .............................. GGTAGGTTTCATAACTGAAAATCTAGAAAACCGTGT 462 30 96.7 35 ...............T.............. ACGGTCGCGCTGGCGGGATGCGCCGGCCAGGTGGT 527 30 93.3 0 .......................G.....G | ========== ====== ====== ====== ============================== ==================================== ================== 9 30 98.9 36 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : | # Right flank : GATAGATTTTGGGGAGTTTGTCCTGAAAAATTTTGTCTCGCCACTCTCTTCCCGGCCCAGAGTCTGGCCAGGAACTCTTGTGTCACGGTGTCGCGGCCCCAGGCCGAAAGAAAGACCAGGTTGCGCTGCTCGTCGCACACGCAGGCGTCGACGTACAGGTCTGGGCACTCTTCGATCTGGTAGAGCGGGGTGGGGCTGGGCATAGGAACCTCCTGGAAGGAGGAGCCACGCCGCCCTCAAGGGGCGGTGAAGCCCCTCGGGGTGTAGTCCAACTGGTGCAGGGGAGCGTGGTGGCTACCGAACGCTCTTGGTGTGAGGGTCGAAGCTGAGCCCATCGGCTTGGTGCAGCGGCCCTTGGCCGATCAGGAAGACCTGGCAGAGGTACTGATCGCGTAGCGCGACAGCCGCTTCGGCCTGCTCCAAGGTCAGCGACAGCTCCTCGATGAACAGGTCGATGAGCTCGTCGTCGCCGGCGACGTCGTTGTTGGACTGTTGGTCCT # Questionable array : NO Score: 9.21 # Score Detail : 1:0, 2:3, 3:3, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.78,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 3-896 **** Predicted by CRISPRDetect 2.4 *** >NZ_PHST01000191.1 Pseudomonas aeruginosa strain PA19 contig_16422_12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 3 30 100.0 35 .............................. TTGGCCGGCTCGCCGAAGGCCTTGCCGTCGTTCGT 68 30 100.0 35 .............................. ACGATCTCGCAGCAGTAAGCCAGTGCCGGGGTCGT 133 30 100.0 36 .............................. TGAAACGCGCAAACCGCTACGTCGGGGTCCACAAGT 199 30 100.0 37 .............................. TCATGCTGCAATTCTCCTGCGCATGTCAGCCTCAAGT 266 30 100.0 37 .............................. AGCAGGCACGTACCGCAGGCTCTCGAAATGTTAATGT 333 30 100.0 37 .............................. GACAAGCCACCTACCCACTCCTACAACCCTTTCGCGT 400 30 100.0 35 .............................. ATGGTCCTTGCCCTGCTTCGGCGAAGGCTCCTTGT 465 30 100.0 36 .............................. CCTGAACCGTTGCTGATCGAGGCCGATGGCCCAGGT 531 30 100.0 37 .............................. ACCACGCAGACGCTGGACGGTCTCACCTCCGCTGTGT 598 30 100.0 37 .............................. ACCGCCACACTGGAGTTGCGTGAGCGACCCATCATGT 665 30 100.0 38 .............................. GCTGCCTGGCAGGCCTGCTTGAAGCCGGCCGAAAGCGT 733 30 100.0 38 .............................. ATCGCCGCAGACGCTACGCAGGCAGAGACCACTGCCGT 801 30 100.0 36 .............................. AGGCCGAAGCGCCGTGACTTGAAGACCTTGCCGAGT 867 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 14 30 100.0 37 CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Left flank : GTC # Right flank : | # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CGCGCCCCGCACGGGCGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CGCGCCCCGCACGGGGCGCGTGGATTGAAAC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-6.80,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.37,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //