Array 1 1415-165 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAFV01000001.1 Escherichia coli strain SL106 NODE_1_length_358840_cov_82.221417_pilon, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1414 29 100.0 32 ............................. TTCCGCGACCCGGCGATAAGGGAAGATGGGTG 1353 29 100.0 32 ............................. CGCCAGTGGGGGAGCCGTGAGGACCTGACCTG 1292 29 100.0 32 ............................. CTGACCGGATTTATTAACCCCGTCAACCGTAC 1231 29 100.0 32 ............................. TGGCTGTGGCTTTGTTTTTTGCTCTGATATAT 1170 29 100.0 32 ............................. GGCGGCATTACTGCTGCGAGTATAACTACGAT 1109 29 100.0 32 ............................. CCGCCTGATGGCGACGCGTCTTTTAACCCCAT 1048 29 100.0 32 ............................. TTCGTGATTCAGGATCTGGCGATTTATCAAAA 987 29 100.0 32 ............................. TAACGACAGAGGGATTCGGCAGCGAAGAGGAT 926 29 100.0 32 ............................. CGTAGTTTCGGCAGTCCAGTGCCTCGTTACGT 865 29 100.0 32 ............................. ATAGAACGGGACGAGATTTTTAAACAATGGCT 804 29 100.0 32 ............................. CAATCTGAGCCAGACGCGACGAATAAAAGCAT 743 29 100.0 33 ............................. TTGACGTTGATTTTGTTCGTTATGTTGCCAGCC 681 29 100.0 32 ............................. CTCTGATTCATCGGCGGCGATACTGTCATCAC 620 29 100.0 32 ............................. GAAAAACAAATAGATGGATAGCTCGATATCAT 559 29 100.0 32 ............................. CGGCTTATTGCTCTTGCCGACGGATTACAGTG 498 29 100.0 32 ............................. GGCTGGTGGGTTCGGGTAACTGGTTTGCTGTC 437 29 100.0 32 ............................. TACATGTTGATGACGTTTGCCAAATGCCATGG 376 29 100.0 32 ............................. ATTATTAATTCTGGTGGCGCTGGTCGCCCTGG 315 29 100.0 32 ............................. AGCGCGCGCGGGCTACTGCACTCGGTGATAAC 254 29 100.0 32 ............................. CCGAGCATTATATCCTGTGCGTCGTTCATTTA 193 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================= ================== 21 29 100.0 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTGGATGAACTACTGGCAACGCTGACCGATGATAAACCGCGAGTCATTGCACTGCAGCCGATTAGCCAAAAGGATGATGCCACACGTTTGTGCATTGAAACCTGTATTGCGCGTAATTGGCGTTTGTCGATGCAAACCCATAAATATTTAAATATTGCCTGATTAAACATTTATAAGCGTTATAAATGGGTGGAACCTGTAAAGACTTCTACTCATTTATATATTTTGTCGCCTCTGAAAAACCTCAATTTTGCCCATCCTGGACTAATCATTATCATTCTCTACAAATTCTGTGGCGTTAATTTTTCGTTGGAGTGAAAATTATTGCGGTAAAGTTTGGTAGATTTTAGTTTGTATAGAGTTATTTTAAATATTTACCTTTTTAATCAATGGATTAAGCGTTCTTTAACATAATGGATGTGTTGTTTGTGTGATACTGTAAAGTTGGTAGATTGTGACTGGCTTAAAAAATCATTAATTAATAATAGGTTATGTTTAGA # Right flank : GCCAGAAAACATGAAAAAACTTTGGGAGGGGATGAGTTCCCATAAGCGCTAACTTAAGGGTTGAACCATCTGAAGAATGCGACGCCTCGGTGCCTCGTTAAGACGATGCCTCGCGTTCTTCAATTGCGTTTTGTAGGCTGTCAGGGATACTGTCCCACGAATGGC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [56.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 128-1010 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAFV01000009.1 Escherichia coli strain SL106 NODE_9_length_125279_cov_79.290055_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 128 29 100.0 32 ............................. CTCTTCAGCAATGAAATCGTCAAACGAGATTA 189 29 100.0 32 ............................. CACAATTATTCGGTACGACGGGTTCAGGCATT 250 29 100.0 32 ............................. GACCAGAGATGTCGTAGCCGTATTTCGCAGCC 311 29 100.0 32 ............................. TCACCGGGTCAGATACTGATGTTATGGCTTAT 372 29 100.0 32 ............................. AATGCAGGGCTGGGATCGGGAAAAACAATTTA 433 29 100.0 32 ............................. CTCATCAACCAGAATACGACCCGCCTTTTTGC 494 29 100.0 32 ............................. ATTACGCCGCCTCGCGTTTTTAGTCATTTCTA 555 29 100.0 32 ............................. CGTGGTCGGGATTGTTGCGCCAGTCTCCGGGG 616 29 100.0 32 ............................. CACGGCTGGCCATTTGAAATACCTGTTGCTCT 677 29 96.6 32 .T........................... AACAGCGAGCCAACTGGTTTCAGATTGCTGAA 738 29 96.6 32 .T........................... GCGATCTCGCGGAATACACCGACGAGGCGGGC 799 29 96.6 32 .T........................... TAAGGCCGTCGCCGGATCAGCCTGGCTATGCC 860 29 96.6 32 ...C......................... TTCTTGCGGGTGTTGCAAATATTCTTCACGTA 921 29 96.6 32 ...C......................... GACGCCGCCGCCGCGAAGCCGTTTCCGATGTT 982 29 96.6 0 ............................A | ========== ====== ====== ====== ============================= ================================ ================== 15 29 98.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTATCCAGTTCTTCGGGCTTACCAATATGGGCCAGAATTGCTGACCAGTTATCGTGAGAGTAATTCATCGGCACGTTAAATCATATCAGGCGTAATACCACAACCCTTAAGTTAGCGCTTATGGGATG # Right flank : ACCATATAACCCGTTATCTCTTTCTCAAGTTTTTATATTAGCAGTACTTGTAATAAGCAACATATCCACGTAACACCTCATGTTCAAAATAGTTCTCCATGCCAGAGAGGTTCACAATTATCGATACAAAAAATTAAATTTAATCAAAGTGTTATTTGTATGATTCTTAAATCGTTAAGAAATTTTAATCTATTATTTTTTTAATATTGAATTAATGCCTGTTAATTTTTTCTTTAGAATAACAGTATATTTTTTAAGCTTGTTATTCATTGGTTAAGTAATAAATCTGGAAGTTTGTCTTTGTTTTGAGGCTAATGAGTGGTTTTACATAACCGCCTCTATACGCTGTTGATGAATAGTTCTTATGAATAAAGATATCCAGTTCATACTTTAAGTGAAAATTGATAAAGTGCGATTCGTATTGTCTTTTATTCTAAAGACATCGAGTGTAGTTAATATTCCTTGTAAAAACAGGGATAAACCGAACTAGTTAAAGTTTT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 26560-28174 **** Predicted by CRISPRDetect 2.4 *** >NZ_QAFV01000009.1 Escherichia coli strain SL106 NODE_9_length_125279_cov_79.290055_pilon, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 26560 29 100.0 32 ............................. ACGGCTTCATGTTCTTGGTGATGGGGTTCACC 26621 29 100.0 32 ............................. AAAAAATGCGACGACCGCAGCCATTCCGATCT 26682 29 100.0 32 ............................. AGATCAACACGGTAGATATTTCCGTGATTGGG 26743 29 100.0 32 ............................. GCGTTGGAGTTCGCGGCGGCATTATTGAGCCT 26804 29 100.0 32 ............................. AGTCTTTAATCAAAATGGATTTTTATAATGAA 26865 29 100.0 32 ............................. GCCGGGTTAAGAAGGTGTATGGATGGCCCGGA 26926 29 96.6 32 ............................C TGATCACATCATGTTTATTCGCGGTCGTATTG 26987 29 100.0 32 ............................. TACTGGAAAAAGCTGGCGACGGTGAGCGCAGC 27048 29 100.0 32 ............................. GGCACGGAATTGTTATGCTGTTCCCCTGACCG 27109 29 100.0 32 ............................. ATCCGCCGCCGGTTAACGCTGGACCAGTTCCG 27170 29 100.0 32 ............................. GGACAATGTGAAAAGCTTAATATTCATTACAT 27231 29 100.0 32 ............................. CGACGTTTTCTAATATCACCCAGCAATCAATT 27292 29 100.0 32 ............................. ATTTCATCAAAGCATTAAGGGATGGAATAAAG 27353 29 100.0 32 ............................. TCATGAATATGGGGAAAACGAACAATCTGTTT 27414 29 100.0 32 ............................. CCGACGTGGGGATTTACTGCCACGCATAAAAA 27475 29 100.0 32 ............................. TACAGTTTCCATAAATTCACCTCGTTTATATA 27536 29 100.0 32 ............................. ATCGGACGATGGCGATCGCAATCGCGCGGGAA 27597 29 100.0 32 ............................. AGGACGAAACGACCGGAAAACTGGCGACGGGC 27658 29 100.0 32 ............................. CGTCCGCGGCTGCAACTGATGCCGGGGCTTAT 27719 29 100.0 32 ............................. AACCTTGTCGGGTCGCCCGTGCGTCATGATGA 27780 29 100.0 32 ............................. AGTTCCCACAAACCTGGGTGCATCTCGCGTTC 27841 29 100.0 32 ............................. ACTGCAAAGTTCTTCACGCTGGTTTTTATGCA 27902 29 100.0 32 ............................. CCAGCCGAAACAACGCCAGCAAAATCGACCGC 27963 29 100.0 32 ............................. GGATATAGAGCGGGTACTCGAGCGAAGCGGGG 28024 29 100.0 32 ............................. CCAGGACAGGCCGTGACGGTTGCCATTGAGTC 28085 29 100.0 32 ............................. TTTTTGTTCTCTTCAAAACGCCGAACAACCAA 28146 29 93.1 0 ............T.....A.......... | ========== ====== ====== ====== ============================= ================================ ================== 27 29 99.6 32 GAGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CGTGCTTGCTGCTGGAGAAATACAACCGCCGGCCCCACCTGAAGATGCACAGCCTGTTGCCATTCCGCTTCCCGTTTCTCTGGGAGATGCCGGACATCGGAGTAGCTGAGATGAGTATGTTGGTCGTGGTCACTGAAAATGTACCTCCGCGCTTACGAGGCAGATTAGCCATCTGGTTGTTGGAGGTACGTGCAGGGGTATATGTAGGTGATGTATCCGCAAAAATTCGTGAAATGATCTGGGAACAAATAGCTGGACTGGCGGAAGAAGGCAATGTAGTGATGGCATGGGCAACGAATACGGAATCGGGATTTGAGTTCCAGACATTTGGGGTAAACAGGCGTACCCCGGTAGATTTGGATGGTTTAAGGTTGGTATCTTTTTTACCTGTTTGAAAACAAAGAATTAGCTGATCTTTAATAATAAGGAAATGTTACATTAAGGTTGGTGGGTTGTTTTTATGGGAAAAAATGCTTTAAGAACAAATGTATACTTTTAGA # Right flank : GGACGCACTGGATGCGATGATGGATATCACTTGGAGTTCCCCGCCCCTGCGGTAGAACTCCCAACTCCCATTTTCATACCCATCAAGACGCCTTCGCCAGCTCCTTCACCAGCGGTAGCATTATCCGCATAACATCACGGCAGCGACGTTCTATTCTTCCTGGAAGTGCCTTATCAATATGTTGTTGATTATCCAGTCTTACGTCATGCCAGCTATTTCCCGCAGGGAATGCAGCTGTTTTTGCGCGTTGCTGATAACCATCCTTATTCCCAAGATTCCAATTTGTTGCTTCTACCGAAAGTACGGCAATACCGGCTTTGTCGAAAACTTCGGCGTCATTACAACAGCCAGTACCCTTCGGATAATTTTTATTCAAACCCGGATTGGTCGTTGCGGCAATTCCATGACTACGCGCAATTGCCAGTGCCCTGTCGCGCGTTAATTTCCTTACTGCTTCAGGGGTTTTTACACCACTGTTGAAATACAATTTATCGCCAACA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GAGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GAGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //