Array 1 116073-113112 **** Predicted by CRISPRDetect 2.4 *** >NZ_JACLZB010000002.1 Collinsella intestinalis strain An719 An719_contig-115_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 116072 32 100.0 36 ................................ ACGTGAAACGTGCACGTGAGCGTCTGGATATAGAGC 116004 32 100.0 33 ................................ TGATAGTAGCCATTACGTAAGCTCTCCCGACAA 115939 32 100.0 34 ................................ GGCATGACGGCGCCAGTGACGGCGGTGAACGCCG 115873 32 100.0 35 ................................ GACTTCGACGCCCGGGGCGTCTACGCGCGCCCCGA 115806 32 100.0 35 ................................ ATCTCCATTACCTCCTCTCGGGCCGCGAAACGCCC 115739 32 100.0 35 ................................ ATAGCGCGGCCACTTGCAACCCTCGGGCATGAGGC 115672 32 100.0 34 ................................ GTCCTCCATCTCCCACGCCTCGCACTCGAGCGCC 115606 32 100.0 36 ................................ ATCGGCGTGATGAACGGCGACGGCGACGCCATCCAG 115538 32 100.0 35 ................................ TGCGAGCCCGCCAGCTCGCCCGGGCAGGTCGTGGC 115471 32 100.0 35 ................................ GAGAACCTCGCGCGCTGGGAGGCGTACATCGGCAA 115404 32 100.0 35 ................................ GATAGAACGGTGAATGGGTCGGTGCGCGTGGACTG 115337 32 100.0 35 ................................ TGCCTTATGCTGGCGTCGCGCGGATTCGTCTACTC 115270 32 100.0 34 ................................ TCCGGGCTGAAGTCCGCGTAGTCCACTTGGACGA 115204 32 100.0 33 ................................ TCGGCACCGGCGTCCGATGACGGCGAGCAGGCG 115139 32 100.0 35 ................................ TGCAACGGCTGGATGTCCGTCACGGTCGCGCCCGC 115072 32 100.0 35 ................................ GCCAAGGACGCCGCCGAGGTGTCCGAGAAGTACGG 115005 32 100.0 38 ................................ CCATACTCGCGTTATGACTCAATCGTATGCGACGGCGC 114935 32 100.0 33 ................................ ACCGATTGCCCTATCTGCACGCTGCCGTCCGTA 114870 32 100.0 34 ................................ TGTGGCGCATCGCGCCGGACCACCGCACGGCATA 114804 32 100.0 35 ................................ AACGCCTATCACGAATCGCAGGTGCCTAGCGACAC 114737 32 100.0 35 ................................ TAACAGCAAAGGACGCCGACGATGGACGGCGCGGT 114670 32 100.0 34 ................................ GAGACGCGCAACCCGCTGAGCACCGCCAAGGCGC 114604 32 100.0 35 ................................ CACAACCTCGCGTTTGATGGGACGCATATCATCGA 114537 32 100.0 34 ................................ ACGGACCGCAACACAGCGTTTCAGATCCTGCCGA 114471 32 100.0 34 ................................ AATCAAGGTGCGGTCAACACCAACTGCGGCCGCT 114405 32 100.0 33 ................................ CATGAGCTCCGACGTCATTCAGCAGATAGGCGA 114340 32 100.0 34 ................................ GTCACCATCGGCGGCAGCTCGATACAGGCGCGGC 114274 32 100.0 34 ................................ ACCGACCGCAATACGGCGTTTCAGATCCTGCCGA 114208 32 100.0 35 ................................ AAGAAGACCGCCGAGCGGCTCTCGAGCGTGAGCCC 114141 32 100.0 33 ................................ TTGACCGGCCACAGCTCCACGTCGGCGAACTCC 114076 32 100.0 34 ................................ CACGCTCGCAGACATCGAGTACGTGAGCGAGGAC 114010 32 100.0 35 ................................ GGGTTAAGTAGCAATGGCTCCCCGGATGGGACTTA 113943 32 100.0 35 ................................ CCAGAGATGGCCCTTGTGGATGACCTTGTCCCCGG 113876 32 100.0 34 ................................ TCCAGCGAGAAGCAGCGCGAGGAATCCATCGAGG 113810 32 96.9 34 .G.............................. TCGTAGCCCACGGCGGCGCGGCGGAAGAAGTCGG 113744 32 100.0 35 ................................ AGCGCGGGCGTGCCGTACCGCTCGATAAGCTGCTC 113677 32 96.9 34 .........................C...... TGTTAAGGACCGTCTTTTCCGCAGACACATACGA 113611 32 96.9 36 .................C.............. AACCAGTACCACGACAGCGACGTCCCGTCAGAGACC 113543 32 100.0 34 ................................ ATCAAGGAAAACAAGCGCGTGCCGTACCTCGATG 113477 32 100.0 35 ................................ CGGGCGCTGAGAAGGTGTTTGCCTTGGCTGATACG 113410 32 100.0 35 ................................ CGGCGCGTCGGAACGTGGTCGCTCGACGACGCGAG 113343 32 100.0 35 ................................ TCAAACATCCTACGTCTGCGCCCGCTCCTACGTCC 113276 32 100.0 35 ................................ GACAGCGTCGCCTGCATGCCCGTCTTGGCCCCGCG 113209 32 96.9 34 ..........C..................... CCTGACGGATGCCCACGCCGATGCCGGCCGGGAT 113143 32 96.9 0 ..........C..................... | ========== ====== ====== ====== ================================ ====================================== ================== 45 32 99.7 35 GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Left flank : TTCGTGGCGACTTGAACGATTATCCTGCTTGTTTGTGGAGGTAAGAGGTGTACGTATTGGTTACCTATGATGTGGCCGGCGGTGATGCTGACGGTGCTCGCCGACTGCGGCGTGTCGCCAAGCTGTGCTGCGAGCACGGGCAGCGAGTTCAATATTCTGTTTTTGAGTGTCTGCTTGAACCTGCACAATACGAGCGGCTGAAGGCCGACTTGATTGGAATAATCGATAGGTCGAAAGACAGTCTGAGATTCTATAACTTGGGCAAAAAGTGGAAGTCGAGAGTGGAGCATGTTGGTGCGAATCCTGGCTATGATCCAGAGGGGCTTCTAATCATATAGATCGACAAAGCCTGTTGCGCGAACTGTAAGTTCTGATTAAGTGCCGTGTGGTTCGCGCAGAAAAGACCTATCAGATGTGGATAGATAAACGGTGCAAGCACCAGTGCTTTTTGAAAAATGAATATAGAGATTTAGGGATGCAATGGAGTGTATACTTTGGCT # Right flank : TTTGATGGCTATGCGACGCTTCCCGTCGTCTCCGTTGCATCTCCCGCCGGCGCGCGGGCTGAAGCTCCGCCGATTCGTCGACGAAAATGGCGCGTGAGGAGCGTGTGCGTTGTTCTTCAAAAATGAGTATATGGACTGTTGGCCGTTGCGCGCTGGGCGAGCCGCTGCCGCCGCGCTGAACGCAGAAGGAAGGATGTCTCGGCATCTTTCGAGAGATCATGCTTCGGCAGAGAAGCGGCAATAAAAATATTTGGATATCAAACTAAATATGCTATACTGACGCAATGTCAGACGATCCGATAGGGGAGGTGCTCAATCATGCAGGACTTTGCCTCGGAGATTTCGCGCACGCGCGCGCTCGTCAACCAGTTTCTTACCGGCGAGCTCGCGCGGCGCGGCTACGCGGGCCTCGCGCCCTCACATGGCGACATCTTGGCGCAGCTCTGCTCTGAGGACCGGGTGCGCATGTCCGAGCTCTCGCGGCGCATCGACCGCGATCC # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACCCTTCACGGGTGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCCTTCGCGGGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.50,-6.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [33.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //