Array 1 613-1742 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIIF01000040.1 Moorella thermoacetica strain DSM 12797 MOTH_contig000040, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 613 29 100.0 36 ............................. CGAGGTAAGCGACCGCGTGATCGCCCTAACTCTAAA 678 29 100.0 36 ............................. CCGACCTGATCAACTCTTACGCTGCAGCCCGGTACC 743 29 100.0 35 ............................. ACTGCCGGCGGCGCTCCTGGGCCGCTTTTATCCCT 807 29 100.0 36 ............................. TGGCTTTACGCCGCCCTCCTTAAGCCGCGTCCAAGC 872 29 100.0 37 ............................. TTTGAAGTACTCAATGATGTTTCCCAGGCTATTCATG 938 29 100.0 36 ............................. ACAACTGAATAAGGCTCGCTGATTATAAGAGGCCTT 1003 29 100.0 36 ............................. TCAGGATTGCCCTTCCGACGGACGAGGAGAGCAACT 1068 29 100.0 36 ............................. CGATCTGTTTCATAGTAAAACTCTTGGGCCATGACA 1133 29 100.0 37 ............................. AGTTATCGTCAAGCCGTCTTTGGCGTTCGGGATTAAG 1199 29 100.0 36 ............................. CACCCCAAGCCGCTCCATACGCCACCGGGGTACCCA 1264 29 100.0 35 ............................. GTTTTCCCCCTTTAGGTAAGTAAGGAGCTTATCCA 1328 29 100.0 36 ............................. CGTCACCGGGGCCGGGGATGGCCTGGTTCTGCTCGC 1393 29 100.0 35 ............................. ATCAAGGTACACCCAGCAAGTTAAGCCCTGCCCAG 1457 29 100.0 35 ............................. GTTAACCCTGATAAAAGAGGGACAGCCCAATTTCG 1521 29 100.0 36 ............................. CTTCTTGTTCTGCCATTATGCCGCCACCTCCTTAGA 1586 29 100.0 36 ............................. GAAACTATCGGCCCTAAAGAAGGCTGGGTTAATAGC 1651 29 100.0 34 ............................. TACCTGGGCGGCAAGTCCGGCACCGGCCACGGGC 1714 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 18 29 100.0 36 GTGACCATCGACCATAGAGGAATTTGAAC # Left flank : CACACCTTCCAATCGTACTGCATCTGTTTACCTGGGCCTGTTTCCACCCGGGTGGTGGCTAATTTAGCGGTCCTGTCATCTTCCTTGATGGCCCTAAGATAACGGTGGACGCTGGCCAGGGAGCCTTGATAGCCCTTATCTTTCAGTTCTTTGTAAATCCTTGTGCCGATATATCCTTTGGCAAGCATAACCTTTATTTCTTCCAGAAACTTGTCCAGTTCTTTGGTATACTCCCTGGCTTTAAACTGGGGAGGGCCGGCTTCTTTAAGGTACTTCCTGACGGTATTCCTGGACACCCCAACATCCCTTGCTATTTGCCTGATGCCGACCCCTTGAGCGTGCAGTGCCTTGATGCGCTGCCATTTGTACATGCTGACCACCTCTTTTTCCTCCCCCTCTCAGGGGAGATTTTATCACAAGGTGGGTCAGTTTTATTTGACGATCTAGGGTCAATTCTATTTTACGATCTACACTTGACTACTGCCGCCGGTAACTCTTCC # Right flank : CGACCGCAACAATTACACCTTTCCCTATCGGCTGGTGGATTTGCAATTTGGTTTGCAAACAGGGGCATCCGAGGCCACAGTGAACGTTTCAACGGAAAGATAACCGTATTGCGCCTGTCACGCTCGACCTCCATTTCGTACAGGCCGCACTATCCCGTCCTGTAACTCTACCCGGCGTGCCTCCTCAAGTAGAGCTATGGCATCCAGCAGGGCTTCCCGGATATGATCACTAGTTCGGTTGAAACCCAGAAGCTTTGCCGTCTCTACCACCAGGTTATCCAGGCTCATTCCCATAGCACTCTGGAGTACGATCATTACAGCCTCCGCCCGCTCCTCTACGCAAATATGTAAAATCGGTCGTGGCTTCTTCCCCTTGGGCGGAACTCGTACCGGAGGCACTTCCATATCAGACGGCCAGATGAAATCACCCTGCTTCTTGAATCGGTTTTCGCTATCGTTTTCAACTACCCATTCTATTATCTGTTTTACTTTCCTGCTCG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCATCGACCATAGAGGAATTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [55.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 1 2385-139 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIIF01000043.1 Moorella thermoacetica strain DSM 12797 MOTH_contig000043, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ======================================= ================== 2384 29 100.0 35 ............................. ACGTTTAGCTAAATGTACCCGGATATGTTCGCCGT 2320 29 100.0 37 ............................. AGCTGAGGTACGTATTGGCTGTGTGGCGCTACATCGG 2254 29 100.0 36 ............................. TGATAGACATTGCGAATGCCGTGCTTACCGTGCTCA 2189 29 100.0 36 ............................. ACAGCAGCGGCGGAGTGGCCGACAGCGACTTAGGAG 2124 29 100.0 35 ............................. GGCTAAAACCTCAAAAATGACAACTAATGAGTTAG 2060 29 100.0 37 ............................. TTTTTCATCTTCTGTCTTACCTGGCATATCCGCAACA 1994 29 100.0 37 ............................. GGAAAAAGAAAAAATGACGGCGGCCCTGGACAAACTG 1928 29 100.0 36 ............................. TATCTCGCGCACTCATATCAAACCGGCTTCTCCCCT 1863 29 100.0 35 ............................. GAGTGGAGTATGAGGCCAACAGATTTACCGTAGAA 1799 29 100.0 35 ............................. TTTAGCCGCAAGGTTGGCGAAACGGTGATAAACGT 1735 29 100.0 36 ............................. AGAGCAGTTTAAGAACGTACTCGCCGAGAATGCTGG 1670 29 100.0 35 ............................. ACCAAACAAAAAAGCCCCCGGACCCGCGGTCAATC 1606 29 100.0 36 ............................. CAACTTTTTCCTAATCCTAAATCATACCTGCTTTGG 1541 29 100.0 36 ............................. TCCGACTCGACCTGCCGCAAACCTCGTAGTACTCAC 1476 29 100.0 38 ............................. TCGGGATCGGTAGTTACTCCACCCTCATGGACTACCGC 1409 29 100.0 36 ............................. TGTTTATTGACTATCGGCCGCACCCCGGACATAGCC 1344 29 100.0 37 ............................. TCGGGGTAAGCCACTACAGCATCCTGGGCTTTGTGGA 1278 29 100.0 36 ............................. AATGAAGCTCAAAAACTCCTATACTGCCCTCAACCT 1213 29 96.6 36 ..T.......................... GATAAAGACGGAACGGGCCACCTTGAAATGGTGTCA 1148 29 100.0 36 ............................. TAGTTCGTGGTCCTCCGCTAGGTCCGGGCGCGGATC 1083 29 100.0 36 ............................. TGATTAAGCCCCCCCAACTCGGTCAGGACCTTTCTC 1018 29 100.0 35 ............................. CCAGTTTCAGTCTGAACTTGCCGTCGCTCTGGCTT 954 29 100.0 37 ............................. TTACCTGGGTGGTGTTGGCAATCATCGGACTTATTGC 888 29 100.0 36 ............................. CACCTTCGTTTGCAGTTGTCCCGAATGTGGTCACCT 823 29 100.0 37 ............................. TCATGCTTACTTCGTCAACAATCAGCAGGCCCGGGCC 757 29 96.6 36 ............................T TATTTATGCCAGGGCTGTTTCAGGCCATCTATATAG 692 29 100.0 37 ............................. GGAGTTGGCTAAACGGAGGAAGCCTTTCCGGGTAACA 626 29 100.0 36 ............................. TGGCGGTACTGAAGAATACCGGCGCCTGCAAGGAGC 561 29 100.0 37 ............................. CCGGTATGTCGATTTGCGTGGTCCCGGCCGGCACTAC 495 29 100.0 39 ............................. TTGCTAGAAATCATCAACGTTCTGCGTAAGCACTTACAG 427 29 100.0 37 ............................. GCGGTCTGCGTAGCGGCCAGGGCCTTCTTCGGTTGGC 361 29 100.0 36 ............................. TGCCTCACGAGCTTCCAGGGAAAGTTGCGAATTATA 296 29 100.0 36 ............................. GATCATCCGTATCGAAACAAGGCAAGAAACACCGTA 231 29 100.0 35 ............................. ATTGATGGGCTCAAAAAGAGTGGTTAAAAGCAGGT 167 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ======================================= ================== 35 29 99.8 36 GTGACCATCGACCATAGAGGAATTTGAAC # Left flank : GTGGCAGCTTACCTGGAGTATCGGGTCAGAAAAAGTCTGGAGCAAGAGGAGTCCCCCTTAATCCTGCCGGGGAAACGTAAGAGCACTAACCCTACAGCCAGGGCACTCCTGGAGATGTTTGATTATCTCCTGGTAGTTAAACAGGGTTCGGACCGGGCGTTAATCAACTATCAGGGGCCGGAGGTGATTAGAGCCCTTGAACTTGCCGGCTTCGGTAAGGAAATATATCTTTTTCCACCTCGCGGTGGCGGGTAGAAGTATTTTTTAGTGCCCCCAAGAAAACGTTGGTAATTATATCCAAAGGTGCGGAATGTGGAATAGAGGAATTTGAACGCGTGCCTTGGAAGCAAGGCAACTGGTCCTATCTG # Right flank : CGGGCTTCCTTGACTGTTGATTGTCAATAGAATTGACCCACTATGTGCAAATAAAATTGACCCACTGGGGAACAAAAATAATAAGCTGCAAGTCATGCGCCAAAGGGAATGAAGGTGTAGCCTCGCTGCCGATTTAACG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCATCGACCATAGAGGAATTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [61.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.41 Confidence: LOW] # Array family : NA // Array 1 103948-106229 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIIF01000009.1 Moorella thermoacetica strain DSM 12797 MOTH_contig000009, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================== ================== 103948 37 89.2 194 ....T......A....T...........A........ GGTAAGGATTGATCCAAAGATGGTGAGCGCGAAACCCCAGTGGAGCTACAAAATCCGGATGTTTCGCGATGCGGCATTTTTATGGACGGCCCGGGCAGTTACAGGAGCCCAGGCTGGTCAAAAAATGCCCGGGCCGCTAGGTTCGCGCTGGGTGGCCGCTAAAGCCGTCCAGAAAAAGAATTTTTGCGCGGTCT C [103950] 104180 37 100.0 34 ..................................... CTGCACCAGTATAAAAGCGCATCTGCGAATGAAG 104251 37 100.0 35 ..................................... CTCCCAAGTTTTAGCCATGCAACTCCTCCTCGAAT 104323 37 100.0 34 ..................................... ACCCTCCCCTCAGGAGTGAGATAAGAAGATAAAA 104394 37 100.0 35 ..................................... ATTTTTTCGTAGAAAGTTTTATAATAATATCAGAC 104466 37 100.0 36 ..................................... CTTTTGCTACCTTTAATGCATCTCTTGTCATCGAAT 104539 37 100.0 36 ..................................... CTTTTGCTACCTTTAATGCATCTCTTGTCATCGAAT 104612 37 100.0 35 ..................................... GGACACTCAAAAGGGCATTTATACATTATCCTCAC 104684 37 100.0 34 ..................................... CTGAAATTAAATCTGTAGCTTTAAGTAAGGCTCC 104755 37 100.0 36 ..................................... AAGTAAGGCTCCTTTCGCATGGTTTAGTGCCTGGAG 104828 37 100.0 34 ..................................... TTTCGCTTATATCAATGTTTGTCGCTTATCAAGC 104899 37 100.0 36 ..................................... AAAATGCAGTCCTGAGTTGCCAGCTAAACACCGAAT 104972 37 100.0 35 ..................................... CTCGCTCACTCTTCCTCACCTCACTCCAACTTGCC 105044 37 100.0 35 ..................................... CCCGAGGATTTAACGATTTGGGGGCCTGGGGGCTA 105116 37 100.0 33 ..................................... GAGGCATCCGGTTACATCGCAATGTGGAAAACC 105186 37 100.0 34 ..................................... AACTTCTCCAGGGCATTTCGTAATTCACACGTAC 105257 37 100.0 34 ..................................... CTTAGATGCTACGCAGGATTTTATCAAAAGTTTA 105328 37 100.0 35 ..................................... ATGTCTACGTTGCTATACTATATCCGAAAGGAGTG 105400 37 100.0 37 ..................................... ATATATTATGCCACGGCACTATATGAGCTAAAATCAG 105474 37 100.0 35 ..................................... AAACACATAGGCAAAGCCCTATCCCTATCCTCCGG 105546 37 100.0 35 ..................................... TTACTACGATTGCCGTTTGGATTAGAGCTGGTGAA 105618 37 100.0 35 ..................................... TGTGGACTATTCACAGACATTTACAGCCGTAGGCA 105690 37 100.0 35 ..................................... CTCCGCAACATTCAACGCCGCAAGCATGAGAAAGT 105762 37 100.0 35 ..................................... CTGCTTTCCCTGCCTCCCTTTTATCCCAAAACTGC 105834 37 100.0 34 ..................................... ATTGCATTATTTTCGCCGCCTTTCATGGGGTTAT 105905 37 100.0 35 ..................................... CTATTTTTGCTAAGACTAAAAGGGAGAAGGAAAAC 105977 37 100.0 36 ..................................... TTTTAGGTTTCCCCATACTGATCAAAGTTTTCAGGT 106050 37 100.0 35 ..................................... ATCCTCCGGTTCCACATAACAATGAGGATATGCCT 106122 37 100.0 34 ..................................... CTCGGCTGGCAGGCTAATTTAAAGGAGGTGTTTT 106193 37 97.3 0 ...........................T......... | ========== ====== ====== ====== ===================================== ================================================================================================================================================================================================== ================== 30 37 99.5 40 GTTGCACCCGGCTTCCATGCCGGGTGAGGATTGAAAC # Left flank : CCTTACCGATCAGGCCCGCCGAACCTTTTTGGAGGCCTATCAGAAAAGGAAACAGGAAGAACTCATCCATCCTTTGTTAGGTCAACGGATACCCGTCGGGCTTCTTCCCCATATCCAGGCGCGCCTGCTGGCGCGACATCTTCGCCAGGATGCGGCCGAATATGCGCCGTTTGTTGCCCGATGAAGCGGATGGACATCATCATTGCTTACGACGTAAATATGGAAAGCAAAGAAGGGCAGGCCCGCCTGCGGAAGGTGGCCACTATTTGCAAGAACTTTGGCCAACGGGTTCAGTATTCTCTTTTTGAATGTCGGGTAACACCGGCTCAGCTTGAAGAACTCATTTACAGCCTCCGGAAAGTCATTGATGAGAAACGAGACAGCCTCCGCATCTACATATTGCATGGCGGCCGGGAGGGTTCCCTCAGGGTTTACGGCCAGGACCGGTATGTGGACTTCGATGGGCCGCTGATTCTGTGAAGGCCCTGGCGGTACTTTGC # Right flank : CACATTTCCGGCGTTACGTCCGTAAGGTAACGGATAAAACCCATATTCCGCACCCTGTGAGGAACCCAAAAATAATTTTTATAGGGTGCAGAAAGAAATAAAAGTAGAGAGAATCTTCTAACCAGGAATTTCTAATTCAGTGTCGAATCATTCCTCTAAGAGA # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.51, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGCACCCGGCTTCCATGCCGGGTGAGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-14.90,-14.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [40.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,1.05 Confidence: MEDIUM] # Array family : NA // Array 1 106900-110318 **** Predicted by CRISPRDetect 2.4 *** >NZ_MIIF01000007.1 Moorella thermoacetica strain DSM 12797 MOTH_contig000007, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ====================================== ================== 106900 29 100.0 35 ............................. ACTGTTCGATAGTCCATCCTATATCTCCGCAAATG 106964 29 100.0 36 ............................. CCTCGATTTCAGCTGGGTCGCAAGGAAATTCAGCCA 107029 29 100.0 36 ............................. TCAGTTTTTGAATCGCTCTCGGGTCGGCGCCGGCCC 107094 29 100.0 37 ............................. CAGGAGTGGCAAGTTTGTCTTGAGTTTTTTAACTATA 107160 29 100.0 37 ............................. GAAATTTGAACCTCCCCTACCCCTTGCGGCCGAAAGC 107226 29 100.0 35 ............................. TGCTTGGCTATGATAAAACTCCACCAGCTTTGGGT 107290 29 100.0 36 ............................. TGCAAAAGCGGACATGCCCAGTCTGCGGCCTGCCGC 107355 29 100.0 36 ............................. CGCTCGGGAAAAGTTCGGGAAAAACTCGGGAAAGGT 107420 29 100.0 36 ............................. AGTAGTAAGTATTGAAAAAATGCAGGTAGGCAAAAA 107485 29 100.0 37 ............................. TGCCTGGCCGTGGCGGACTGCTGAGAGGGGAGAAGGC 107551 29 100.0 36 ............................. GGATACTGCTTGAACAGATCCGGGCCGAACACAACC 107616 29 100.0 37 ............................. AATCTCGCTTTTCTCCACGCCGTTGACCAGGAAAGCC 107682 29 100.0 36 ............................. ACAACTATTTCGCTCTCTTTCATTTACCCATTTCTC 107747 29 100.0 35 ............................. TGGCCATCCGCTGGATAAGGATAAGTTGGCCGAGG 107811 29 100.0 34 ............................. TGAGACCTTGCCGGCAGAGGAGCGCCGACGGCGG 107874 29 100.0 36 ............................. AATAAATTAAAAGATAGTAAGATTTATAAATACTTA 107939 29 100.0 36 ............................. GCAGATAAACTTTGTATTTGAAGGTGGTGCAAGTTT 108004 29 100.0 36 ............................. GCAGATAAACTTTGTATTTGAAGGTGGTGCAAGTTT 108069 29 100.0 36 ............................. GGACAACACCCTCTACTTCAGCAATCATTTTTATCC 108134 29 100.0 35 ............................. AGAAAATCAAACCTGCCACCGTGAAAAATGCAATG 108198 29 100.0 36 ............................. TCCGCCAACTTTGTAGCCGTAAGCCAGGGGCTGTTC 108263 29 100.0 36 ............................. GCACTACTGCCGCGAGCACTGCGCCATCGGCAAGGC 108328 29 100.0 37 ............................. GGTATTAGTTGCGACGCGCAACATGCCCCGAGACGAG 108394 29 100.0 36 ............................. TCCATCTCCGGCGGGGTTCGGTTCTCGACCAGGCGC 108459 29 100.0 38 ............................. ACGGCAACGCTTTCTATCATCGCACCCCGGTGGCGGGC 108526 29 100.0 36 ............................. GATCAATACTGATGTGATTGGTAGTGACCCCAATCG 108591 29 100.0 36 ............................. ACGAGATAGATTTTTGTTTGGGTTCCGGGTGCTGGT 108656 29 100.0 35 ............................. CATAACTGCCGGAACATTAAATGGGTATTACCTGG 108720 29 100.0 38 ............................. CTTTTACCCCGGCTTGTTCCAGCTGCTGGTCGGCAAAT 108787 29 100.0 34 ............................. CCGCTGGATCCGCAATGCCGTAATACTCCCAAGA 108850 29 100.0 37 ............................. GAAAAAGAGGCGGTAAAAATGCCCTGGTACAAAAAAA 108916 29 100.0 38 ............................. TGTATTTTGGTTAGCATTGCCCGTTATATATGCATTAA 108983 29 100.0 38 ............................. TCATGGATAAATACGGCATCCCTTATCACGTCTGGTGG 109050 29 100.0 37 ............................. GGATTAATTCATCAATTAAGCCATATTTCTCTATTAA 109116 29 100.0 35 ............................. TCAGGAGTTTTACGAGCAGCCGGGAAAATACACGT 109180 29 100.0 35 ............................. CAAGCATACTGGTGCGGCAGGAGACGGTCCGAAGC 109244 29 100.0 36 ............................. CGCAGTTTGCTATTGATTTGCAGAAACGAGGCTATA 109309 29 100.0 36 ............................. AGTCTTTAGCCCGCGAGATAGCAGAGCAGCTTAAAT 109374 29 100.0 35 ............................. AACTGAAGCGGCTATAAAACAGCGGATGCTTGATG 109438 29 100.0 37 ............................. AGAGCCTGTTATCCAGCCGAAAAAAGCGAAAAAGAAG 109504 29 100.0 35 ............................. GGCAAGAATGGCCGAACAGGAACAGGCTATGTTAG 109568 29 100.0 36 ............................. AAAGGCGGGAGGATGGGCACTTGTAGGAGATACGGA 109633 29 100.0 36 ............................. AAGTAAATTTAGGCATAACAGCCACTTTTGGTAATT 109698 29 100.0 36 ............................. CGTTGAGTCCGTCGAGCTTAACCCAGCTTGGCTTAG 109763 29 100.0 37 ............................. GGAGCACCGCCGGAAACTCGAAAGCCGGGGCTACGTA 109829 29 100.0 37 ............................. GTTAAAGAAATAATTACCCTTACCGCAACGGTGGAAG 109895 29 100.0 36 ............................. GATGGTCAAGAACTTCAAAGAAGGGGTACTTGGACG 109960 29 100.0 36 ............................. TTTTATTCACCCACCCCTGTTACTACCGCAAGGATA 110025 29 100.0 36 ............................. CCTCCTTTATAAGGCCCTCGGCTGCGGCTATAACTT 110090 29 100.0 37 ............................. CCCTGACGCCCCGTAGGCTTACGCCGCTGGTAACCGA 110156 29 100.0 36 ............................. TCCCTTGTCCATTGCCAAATTATCTCGCATCCGCGC 110221 29 100.0 36 ............................. GGCCAGGCTTTTATTGCTTATCGGCACAGATTTATG 110286 29 89.7 0 ...................C....C.C.. | CC,T,C [110305,110309,110313] ========== ====== ====== ====== ============================= ====================================== ================== 53 29 99.8 36 GTGACCATCGACCATAGAGGAATTTGAAC # Left flank : CTGGAAAAGACAATTTTGCACCGCAAGCTAAAAAGGAATATTCGCTATAAAAGTCTTGTCCGGTTAGACTTATATAAGCTTATAAAGCACCTCCTCGGTGAAGAAAAATATTCCCCCATGAAGGTGTGGTGGTAAATATAAGAGTGATCCTGATCTATGATATTAATACTGAAGACAACGACGGCAAACGGCGCCTGGTAAAGATCATGAAGACCAGCCGTAAATATTTATCTCATGTGCAAAAATCCGTTTTTGAAGGAGATATTACCGAAGGGCAAATATCCTTACTTAAGAAGGAAATAATGGCCATAGTTAACATGAAAAAAGACTTTGTCATCATTTATAGCCTCAGGGATGGAATAAAGCTAAACCGTGAAATCTTGACTGACACCCCCGACCCTACAGATAATTTCCTGTAGTGTAAGTGCAAACTGGCGGTTTGACGCAGGGGCTTTTAAAAAATTGCTAAAATCCCTGTCGGGACAAGCCTTTCATCTGCG # Right flank : CCTGTGAGGAACCCAAAAATAATTTTTATAGGGTGCAGAAAGAAATAAAAGTAGAGAGAATCTTCTAACCAGGAATTTCTAATTCAGTGTCGAATCATTCCTCTAAGAGAATT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGACCATCGACCATAGAGGAATTTGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.17%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.20,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [53.3-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA //