Array 1 32337-29683 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS499679.1 [Clostridium] scindens ATCC 35704 Scfld_02_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 32336 33 100.0 34 ................................. GAAAAAAATTATTATGTGGTTCCAGAGCCTGGAG 32269 33 100.0 34 ................................. GTGGCGGAGTATGTGAAGAAGTTTGGAAGCCTGG 32202 33 100.0 35 ................................. ATAGCCAAATCCGCCATTGGTTCCAATCGTTCTTT 32134 33 100.0 33 ................................. ATATTTTCGGTTGCTGAATTGCCGGATTAAATC 32068 33 100.0 34 ................................. GGCCATGCCCCAATCAGGCAGCCTTCGATGAACT 32001 33 100.0 33 ................................. ATCACTCGTCTGTGCGTCAAAACTCTCATCCGC 31935 33 100.0 34 ................................. CTTTCTGCCGCTTCTTGATCGGCAATGTCTGTAG 31868 33 100.0 33 ................................. GCCGTCGGGTCCTCCTGCCTGGCCAGGCGCCGG 31802 33 100.0 35 ................................. AATAAAAACTGTTGACATTATAACACAAATGTAAT 31734 33 100.0 33 ................................. TTATCCACGAAGGCTCTTGAAACCTGGAATTCT 31668 33 100.0 35 ................................. AATTCTTTCGCCAACTGTCATTGTCACAACTCCTT 31600 33 100.0 35 ................................. ATATATGCTACGGCAATCTCTTATAAGCGGATATG 31532 33 100.0 34 ................................. AACTTAGACAGCAAGTCCGAAGCCAAAAACAATT 31465 33 100.0 34 ................................. GTCATTATAATAATAACACAGCAAAAACGAACAA 31398 33 100.0 36 ................................. TCATTTTCTGTACGGCACTCCTGAATTGCTTTCTCC 31329 33 93.9 33 ....T......C..................... AATTCTTTCATGTCATCCCCCTATTCTACTTCC 31263 33 93.9 34 ....T......C..................... TTCCATATATTGTCATAGAGAAGTTGCAGTCAGA 31196 33 93.9 35 ....T......C..................... TTTGTTGGGTCATTTCCAAGAAACCACTCTACGAG 31128 33 100.0 35 ................................. ACCTTCCTTCCTCTTGGCCTGTATTGCATCCTCTT 31060 33 100.0 34 ................................. GCTTCCTTATACCAGGAGTTCATTTTCTGAATCC 30993 33 100.0 35 ................................. ATAGCCGCGCCACCGGCTACTGTTATCGCTGTTGC 30925 33 100.0 34 ................................. TGTGCCACGGCCAGCATGATGTTGATCTTCAACT 30858 33 100.0 33 ................................. CTTCCAAGGAAGCCTCCCCTGCTCTTCCAACAG 30792 33 100.0 34 ................................. ACCTTATAAGGTTTGCTATCGCTTTGCTTAGGCT 30725 33 100.0 34 ................................. GTTCTCTGCGATCAGTTCCCTTATTCTTTCTTCT 30658 33 100.0 35 ................................. AACGCTTAATATATAGCCCTCAAACTGGCTATATC 30590 33 100.0 34 ................................. AATGCGATCTATTCAGTAGTCTCATCCATTATGG 30523 33 100.0 33 ................................. CAAAAAGAAGGAACAGAAAGAAGGAACAGCAAA 30457 33 100.0 34 ................................. GTTCTACAATCGAAGATAAATAACTCATAATTGC 30390 33 100.0 33 ................................. ATCCTCTGTCTGTTCATATGCAGCTTCATATTC 30324 33 100.0 35 ................................. GTCATTGTAATAATAACATAAGTAAAACGGTCGGA 30256 33 100.0 36 ................................. ATAGGCAAACAGCAGGATGTCAAAATCCGGATCCAA 30187 33 100.0 35 ................................. GCATCAATGAAAGCGGCATTCAGGAATGTGCTTGG 30119 33 100.0 35 ................................. ACGTACATGTTATCTATTAATCCTTTAGAACAACC 30051 33 100.0 34 ................................. TATAAACATTGGCGCTCTTTAATCCTCCGTCTCC 29984 33 100.0 35 ................................. ATAATATCCGCTTTCCTTGTGGCTGAAATGCTATA 29916 33 100.0 35 ................................. CACCATTCCGGTAGTTATCGGAGATATTACAATCA 29848 33 100.0 34 ................................. GAAAAGAAGGAGGTGGAGAAGGATGCCAAGAGTA 29781 33 100.0 33 ................................. ATCATTTTGACCTCCTAAATGCCAGTTACCATA 29715 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 40 33 99.5 34 GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Left flank : CCGCCATTCTTATGGAAGTAGGTGATAGAATGCTGGTGTTAATAACTTATGATGTGAATACAGAGACAGAGGCAGGAAAGAGACGTCTAAGGAAAGTAGCAAAGCAATGCGTTAATTATGGACAGCGGGTTCAAAATTCCGTGTTCGAGTGCAATCTGGACGCCGCAAAACTTCGCCAGGTAAAGGCTATCTTGGAAGACATAATTGATAAAGAGGTTGATAGTTTAAGATTTTATAATCTAGGTAATAAGTATAAAGACAAGATTGAACATATAGGAGCAAAGAAAAGTTTTGATGTGACTGCCCCTCTTATATTCTAGAGTGGTTTAGTGCGAATGTGAAGTGCACATGAAAATGCAGGGAGATTCGCACCTGGATATTGATGATATGAGGGCTAGGGAAGTTATAATTTGTTGTGTAGGTGTTGGAAAAAGTTCTTTTGTTTGGCGTTTTGCATAAGAGATTGGCTGTATATTAGGAGTTTTATGTGCAAAATTGCT # Right flank : AAAGAGTAGAGAGGGGCGTTTTGGTATGAAAATAGAAATAGGCAAAGAATTTCCACAGTATTTTAAGCCCTCATATCCAGAGGAATTTAAATTATTTTCACACTTTGAAACGACAGCAGGAATACCAACTGTTTTGTTTGCAATCACGACTTGGAAAGAGAATGGTAAGCCGAATGTGTGCTTTCATTCGTGGAGCTGCTTTCACGGAGATAAAACCGCTTTCTTTGCCGTGCTGGGGAACTTATATCAGCATACCCACACCTATGCCAATATCCAAAGAGAAAAATGCTTTTGTATAAACTTCCTTCCTATAAGTTTCTACGACAAGCTGGTAAACACCATTCGCCAAAATGAAATGGACGATGACGAATTTGCGGCAGGAGGGTTTACAGCTTCTTATGCCAAAACAATTCACGCCCCTGTAATCAATGAGGCGTTTCTTAGTATGGAATGTACCCTGAAAGAAGTACAGGATTTAAGCGGTGCGGGAATTACAGCTA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCTCCCTGTATAGGGAGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.55%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-6.00,-6.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 15409-14772 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS499700.1 [Clostridium] scindens ATCC 35704 Scfld_02_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 15408 33 100.0 34 ................................. ATGACAATGGCATAGAAGGAACAACGGTCTTCTC 15341 33 100.0 35 ................................. GTTCTCTCCCGATCTGACACAAAGAGCCTTGCCTG 15273 33 100.0 33 ................................. TCTAACATATTAGGTTATTTTAATAATAGATGG 15207 33 100.0 35 ................................. AAAATGGAAACGTTGAAAAACTTCATTGCAGAATT 15139 33 100.0 34 ................................. CTGACGCGCAGAATTGGAACCCTGTATATGAGCC 15072 33 100.0 35 ................................. AGTATCCTACAGCAGACGCGCCGTATTCTGCTTGC 15004 33 100.0 33 ................................. TCTATCTTGAAAGGAGGTTTTCAGGTGGCAATC 14938 33 100.0 35 ................................. CTCTAAATCCCCGTTTTGTTAATGAATCCATCATC 14870 33 100.0 33 ................................. TTTAAGCCGGTATATTGGACAGTATCAATAACC 14804 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =================================== ================== 10 33 100.0 34 GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Left flank : CAAGTTAGGTCTTAACTATGTATCTTGCTCACCATTCCGCGTGCCGATCGCAAGACTGGCTGCAGCACAGGCTGCAATCGCAGAAAAGAATGCATAATTAAATCACAAGTTATTTTGACGCAGGGGCAGTATGCCTCTGCGTCTTTTGAATATTGTTAGAAAGATTTTCTTACTATAGCCAACAAGAATTAAGGGTGGTGGAATAGTATGTCTAAAGGAGTTCGAGACGGCAGTCCTTCTTATCATTAAAACTTTATGAAAAAGCTAATTGAGAAATTAGAAATATAAAAAAAGAATAAATTTCCTTGAAAATTAGATATCGATTCAGTAGTGCGAATGTGAAGCGTACATAAAAATCCCAGGATATTCGCACCAAAAAAGTTGCACAAAAATAGTGTATTGTATTACAATATAGATTAGATGAGAGAATGTATCTAAAGGTAACTGTAATATAGCACAAAAATTTTGCAGTTATATATTAAAAATTGGATAAGTTTGCT # Right flank : ATTCCACGGCTGTGAGCAGCCATACTGCCAATGCGTTGTTCCCATGCGGGAACTTGGATTGAAATTAAAGCATAGCCAGTAATGTTGCAAAGTCAAATGCGTCGTTCCCCACATGGGAACGCAGGTTGGATTATTACCATAGTAGATATAGGCGCTCCTGTACAAGGTTGATCCACTTGGGAGAATTCGAATATCGATACCTCTTAATGGGCATAATGGCTTGACTACATCGTCCTTTAGAGTATGAAAGACATATTTTGAATCGAAAATCAGCCTTTTACCGCAAAAAAAGCAAGGCCTATTTTTTAAAACAAACCATACTACGAAGTTATTAAGAATTAATCAATATGTTTATGCTATATTTATACAATTAAAGGGAAATAAAATGGATTTTAAGCAGAAATGCGTAAAGATTTATAAGTTTTTATTATATAAAGCAAATGCCTATAGTTCAGGGCGGCGGAGATTTTTCTCCGCCGCCCTGATTACAATACCAAGCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTTCCCTGCAATGGGAACGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.52%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.30,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-76.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : NA // Array 1 28899-28002 **** Predicted by CRISPRDetect 2.4 *** >NZ_DS499710.1 [Clostridium] scindens ATCC 35704 Scfld_02_32, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ==================================== ================== 28898 32 100.0 35 ................................ TAGGAAGGAGGGATAGCATGCAGAACGGACAGTAT 28831 32 100.0 33 ................................ ATGTATGGTCCTCTAACTCCGTCTACCAATAAC 28766 32 100.0 36 ................................ ATATTCGTTCATTAGTTTCCCTTTCTACTAACCGTA 28698 32 100.0 35 ................................ GATGTATATAGTGTTAAGATACTTTAACAGACTAC 28631 32 100.0 34 ................................ ATTCTGTGTCATGAGCAGGATATCTGAAATCTCG 28565 32 100.0 34 ................................ ACAGAAAAGTCCACAACCTTCCCTTTCTCTGCTA 28499 32 100.0 35 ................................ GATTCATAAAACGCCACATATTAGAAAATGTGTGG 28432 32 100.0 34 ................................ AATTAAAGGTGGTGGTTAACTTGAAGGAAAGAAA 28366 32 100.0 34 ................................ ATCAAATTTATATCGTTCCGTTCCAAATCCGCAT 28300 32 100.0 35 ................................ TCTTTTGGGTACTCGATTCCGAGTATCTCCATCAA 28233 32 100.0 36 ................................ TCTATCTGCTTATTGTGCTGTGTAAGAACTATTATC 28165 32 100.0 34 ................................ AAATCACCTGTATAATTAATTACGCGCCCATTTT 28099 32 100.0 34 ................................ TCTTCTGGTTTCTCGCACCTCTCAAATTCGATAA 28033 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ ==================================== ================== 14 32 100.0 35 GTCTCCACCTGTGTGGTGGAGTGGATTGAAAG # Left flank : ATTATGCGAAATATAACCAGGCGGATATCAGATATTGTAGATAGGTATGGCGGATATATAGATAGAGAAAAGGCAGAAACCATATGCGATATGGCCAGGGAAATCAAACAAAAGAATGCAGAGATATATGTATGCCATCTAGAGCGATATTCCAGTAGAAAAGGCGAAAAAATGGACATGAGCGGTGTGATGGGATCATTAGCATATCAAGGAGAACTCACAGCGTTTACACCTTGGCTAAATGCGGCCAGTGTACTTCATATAGGCAGAAATGTGACATTTGGGTATGGACAGGTTAACGTCGTCTTTGCCTAGCAATTGAAATTTGGTGCGAATGTCAAGCAAACATAAAATTCCAGGGGGATTCGCACCAAAAAAAGATACAAAATGGAATGGTAATGCTAAGAATATGTAATAAAAACTGGTGATAAATATATGAAATAATAGTTAATTTGTTGGAAATTAACAAAAAGTCCTGTATAATATTATATGATATTGCA # Right flank : AGGGATGACAATGCTAGTCTGAGAAAGAGACACATGAATCTGCTGGCAGATGGGCTCGGTATGATCCACCATTCTTTGAAACATAAGTTCAATGTAAGCATCGAAATCATGTTTAAAACGTGATAACAGGGAAGTATCGGGGACTTTAGAGAAACCTGAAAGCCGAATAGAACTCGGGTGGAATAAATTCATGGAGATCAAAGTGTTCTGAAAAAAGAACAAAGAAAGAGGGTAATTGTCAATGAGTTTGCTTTGAAAGTCTGAAAAAATATCATTTAAAGCGATCTGTTGATATTTAGCAGTCATAAATTTTCTCCTCCTCAGGAGTTGAAATGTATTGGTGTCGTTACCTATATCTTACCACCCGTGGAGAGAAAATTTATATAAATCAAGTAAGAAACCCCAGTAAAATCAAGGAGAACAGCATTTATCAAATGCCTAAAGTACACAGAATAAGAGGAGAAATGAGCAAATGAGAAAAGAAGCAAGTTTAGCAGAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTCCACCTGTGTGGTGGAGTGGATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [9,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-4.10,-5.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA //