Array 1 78752-78584 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828079.1 Neisseria sp. HMSC056A04 Scaffold297, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 78751 36 100.0 30 .................................... CAGGTGCGAAGGTCTTTGAATCCTGCCGTA 78685 36 100.0 30 .................................... TAAACAATAAAAAGTAATTGGGCATTAAAA 78619 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 3 36 100.0 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTCGCAGTGCTACAATAATGCGCGCCGGCAAATGCAAACACGTTTGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGGGAATGTCAGCGTGATTGTGTTGCCTGAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCGGAATATATTGCCAAGATAGACACGACAGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTAAACAATAAAAAGTAATTGGGCATTAAAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTTCGGTAACTATCTGAAGTGTACTCATCAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCTTTCTCATTTCGCAGTGCTACAATCGCGCGAATGGACGTTCGAGACCGCCGCCG # Right flank : ACTGGAAGTTTTATATAAAACATAATTACCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCGCAGTGCTACAATGTATATTAACTTAAATAATAGTATATGCTTGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACCTCAACGGGAAATCCTTATTTTATAAGGGTTTCCCGTTTTATTTTGTCTAAAAAATGAGCTTAAAATAATAATAGTTGGTCTGAATTTACTCTTTTTTCTTGGGTTTTTAGCTCTCCCAATAGTAGTTTCATGGTGGCATATTGCTTTTCCGTTACTTCCAAACAGCGGATTGACCCTTCTTGCGGTAGGTTTGCACATAGCCTGTTGTGGTGTTTTTGCAACGAATCTCGACCTTTGACA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.76%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,-0.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.5 Confidence: MEDIUM] # Array family : NA // Array 2 79397-78905 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828079.1 Neisseria sp. HMSC056A04 Scaffold297, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 79396 30 83.3 30 ------.............................. GGAGGTTAAGCCGCCAAACACAAAACACCC 79336 36 100.0 30 .................................... AAACGGATAAAAGGGGGGATATTTTTTTTG 79270 36 100.0 30 .................................... AATGCGCGCCGGCAAATGCAAACACGTTTG 79204 36 100.0 30 .................................... CGGGAATGTCAGCGTGATTGTGTTGCCTGA 79138 36 100.0 30 .................................... CGGAATATATTGCCAAGATAGACACGACAG 79072 36 100.0 30 .................................... TAAACAATAAAAAGTAATTGGGCATTAAAA 79006 36 100.0 30 .................................... TTCGGTAACTATCTGAAGTGTACTCATCAA 78940 36 83.3 0 ..............................NNNNNN | ========== ====== ====== ====== ==================================== ============================== ================== 8 36 95.8 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : | # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCTTTCTCATTTCGCAGTGCTACAATCGCGCGAATGGACGTTCGAGACCGCCGCCGGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATCAGGTGCGAAGGTCTTTGAATCCTGCCGTAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATTAAACAATAAAAAGTAATTGGGCATTAAAAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAATACTGGAAGTTTTATATAAAACATAATTACCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCTCCCTTTCTCATTTCG # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 428-62 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828076.1 Neisseria sp. HMSC056A04 Scaffold234, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 427 36 100.0 30 .................................... ATCTACGGCAAACACTGTACCTAAGTACAC 361 36 100.0 30 .................................... TCGCTCCGCGTTTGATGATCAGCTTATAAG 295 36 100.0 30 .................................... TGTCGGTTTGAGCTTCAATTTATGGGACGT 229 36 100.0 30 .................................... TCAATGGGTTTGTTCAGTACAGTCTGAACC 163 36 97.2 30 ...T................................ CCTTGTTCACGCGGATAGGAGCAACGGCTA 97 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 6 36 99.5 30 GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Left flank : TTTGGCAAACCGTCGTTTGGCTTTTGACCGCACTCGCGATCGTGATGTTGTAGTTAAATTGTTTGACGAATTGGGTCCACGCTTTGCTGCTCGTAACGGCGGCTATGTTCGTGTACTGAAATACGGTTTCCGTAAAGGCGACAATGCTCCTTTGGCATTGGTTGAATTGGTTGAAAAAGCAGCTGATTCTGCTGAATAAGCAAATTGATATGAAAGCACTACCTGTTTAGGTGGTGCTTTTTTATTTGAATAGCCTCTTTCTCATTTCGCAGTGCTACAATGTCTTCCAGCAAGATACGTAGCCAGTCCGCGTTGTAGCTCCCTTTCTCATTTCGCAGTGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCTTTCTCATTTCGCAGTGCTACAATAAAGTAGAATACAAGTATGTGCCTAGGTAG # Right flank : TTGTTTGGGTATTAAGTGGGTGGTTTGCCCAGTTGTAGCTCCCTTTCTCATTTCGCAGTGCT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTTGTAGCTCCCTTTCTCATTTCGCAGTGCTACAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.90,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [51.7-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.91 Confidence: HIGH] # Array family : NA // Array 1 127919-127552 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =================================== ================== 127918 33 93.9 32 NN............................... ATGAATCCGATCAGGATTGAACCTAAACCAAT 127853 33 100.0 34 ................................. AAATACGCCGTCCCTGCGAACTGGGTAGGACGCA 127786 33 97.0 33 C................................ CCATCTGCATTGATAATACAGCTAGTAATTTAT 127720 33 93.9 34 G............G................... CCTGCGTTGATGATACTCAGGAAAGACATTGTCG C [127706] 127652 33 97.0 35 .............G................... ATATATTTCCTTTCGGAGAGAAAACATGTCAGATG 127584 33 87.9 0 ........T....G..TA............... | ========== ====== ====== ====== ================================= =================================== ================== 6 33 94.9 34 ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Left flank : GCTGTGTGTTGAAACAATAGTTGGTGTGTCAAATCGAATCATATTTGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTCTAAGACTGTGGCGTTTACGGAAAAATCGAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATGACTTCTTCTTCATTCGTTCTGATAAAACAAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTAATCCTTTAGTTTGGTTGGTATTTTAATCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCTGCCACCGTATCTCATGTCTGAGTAAGGAAGAGGGGCTGTATGTTCGGATATCGTCCAAGCAGACCGCTCTTCTTTTGATCCTTCGCTTTCCGAAGCTTTAGTGGAAGCAGTGGAGGATATTAGAAGCAAGTTATAAAGGGTAATCAATAACAATGCCGTCTGAAAAAGTTTCAGACGGCATTTTTTATATTTACATATTAAATTTAATATCATATTATCATTGCATGATATCAGTTTGAATTTTTTTAGAATTTCAATATGAAACCCCTAATTTACTATGCTCATTTTGCCCAAGATGAACTCGGCAATCTCTTGCCTTACGAACATTGGCAAACCTTGCAAAGTCATTCGGTAAATGTTGGGGAAATGGCGGCGGAGTTTGCGCGAGTATTTGGGGCACAGGAAATTGCCTGCCAGATGGGAAAGTTGCATGACTTAGGGAAATATTCGGAAGCCTTTAATTATCGATTGTATGGCGATCCTTCAGGTGATCATGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Alternate repeat : CCAGCCGCCTTCAGGCGGCTGTGTGTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [50.0-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 2 128247-128012 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 128246 34 82.4 33 NNNNN............................C TTCTAAGACTGTGGCGTTTACGGAAAAATCGAG 128179 34 100.0 34 .................................. ATGACTTCTTCTTCATTCGTTCTGATAAAACAAA 128111 34 97.1 32 A................................. TTTTTAATCCTTTAGTTTGGTTGGTATTTTAA 128045 34 82.4 0 T............................NNNNN | ========== ====== ====== ====== ================================== ================================== ================== 4 34 90.5 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Left flank : CCCGAAGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACCGTTATCGATTGCGCCCATTCCGCGCTGAAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACCTTTGCCTAAGCGTTTGTCTTGGAGTTGCTGGGCCCAGTCGCCTTCGGGCGGCTGTGTGTTGAAACTTTGACAATCGTGCCACATGTAGGGTTAATTGCCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAATAGTTGGTGTGTCAAATCGAATCATATTTGATCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACATGAATCCGATCAGGATTGAACCTAAACCAATACCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACAAATACGCCGTCCCTGCGAACTGGGTAGGACGCACCCAGCCGCCTTCAGGCGGCTGTGTGTTGAAACCCATCTGCATTGATAATACAGCTAGTAATTTATGCCAGCCGCCTTCGCGGCGGCTGTGTGTTGAAACCCTGCGTTGATGATACTCAGGAAAGACATTGTCGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATATATTTCCTTTCGGAGAGAAAACATGTCAGATGACCAGCCGTCTTCGGGTAGCTGTGTGTTGAAACTCTGCCACCGTATCTCATGTCTGAGTAAGGAAGAGGGGCT # Questionable array : NO Score: 3.58 # Score Detail : 1:0, 2:3, 3:0, 4:0.53, 5:-1.5, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [5-5] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 3 128797-128962 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 128797 33 100.0 34 ................................. CACTAATACCGGCTGTTTCTTTTGGCCCACCATA 128864 33 93.9 33 T........................A....... TAAGATAGTCGGTTCGTCATTTTTTTCTACGAA 128930 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ================================== ================== 3 33 94.9 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACACAGCCGCCCGAAGGCGGCTGGATCAAATATGATTCGATTTGACACACCAACTATTGTTTCAACACACAGCCGCCCGAAGGCGGCTGGCGGGCAATTAACCCTACATGTGGCACGATTGTCAAAGTTTCAACACACAGCCGCCCGAAGGCGACTGGGCCCAGCAACTCCAAGACAAACGCTTAGGCAAAGGTGTTTCAACACACAGCCGCCCGAAGGCGGCTGGTTTCAGCGCGGAATGGGCGCAATCGATAACGGTAGTTTCAACACACAGCCGCCCGAAGGCGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTCCACGGTACACCCAACCAGCTGACCTAAA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACACAGCCGCCCGAAGGCGGCTGGGTCCAAATTCGTACCATACTTCTTCGATAATTCGTTGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGAAATGACATTGTAACGGAGTGATGACAAAGCGGTTTCAACACACAGCCGCCCGAAGGCGGCTGGTAAGTCCAACGGCAACACCTTCCAGAATTTGCCGTGTTTCAACACACAGCCGCCCGAAGGCGGCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCAACACACAGCCGCCCGAAGGCGGCTGGGAGGTTGAGAAAATGGGGAAAGATACAATTTTGAGTTTCAACACACA # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.80,-5.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 4 129290-129056 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ================================== ================== 129289 34 91.2 33 NNN............................... CGGCAAATTCTGGAAGGTGTTGCCGTTGGACTT 129222 34 94.1 31 A................................C GCTTTGTCATCACTCCGTTACAATGTCATTT 129157 34 100.0 34 .................................. ACGAATTATCGAAGAAGTATGGTACGAATTTGGA 129089 34 88.2 0 ..............................NNNN | ========== ====== ====== ====== ================================== ================================== ================== 4 34 93.4 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Left flank : CGGCTGTGTGTTGAAACTGTTGGCTATACGCTCTGCGGCCGCCTTTTGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGTTTCAGACGCAGTTGTGACCAGTCTTTACCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGGTTGATGCGCGCGCCGTAGATTTCGGGGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAAAATTGTATCTTTCCCCATTTTCTCAACCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACACAGCCGCCCGAAGGCGGCTGGGTTCGTAGAAAAAAATGACGAACCGACTATCTTAGTTTCAATACACAGCCGCCCGAAGGCGGCTGGATATGGTGGGCCAAAAGAAACAGCCGGTATTAGTGGTTTCAACACACAGCCGCCCGAAGGCGGCTGGGTTTAGGTCAGCTGGTTGGGTGTACCGTGGAGCAGTTTCAACACACAGCCGCCCGAAGGCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTACCGTTATCGATTGCGCCCATTCCGCGCTGAAACCAGCCGCCTTCGGGC # Questionable array : NO Score: 5.53 # Score Detail : 1:0, 2:3, 3:0, 4:0.67, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [3-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 5 129615-129449 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 129614 33 87.9 34 NNNN............................. TTGTTTCAGACGCAGTTGTGACCAGTCTTTACCG 129547 33 100.0 33 ................................. GAGGTTGATGCGCGCGCCGTAGATTTCGGGGTC 129481 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 96.0 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GCGGCTGTGTGTTGAAACCACTCTGGCAAGTCGCCCACATCCTGCCCCACGACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGATTCGTGCATCACAAAATTCGATAGGAGTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCAAGTCTCCGGGAAGGTTGTTTAGGAGCTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTGGCTATACGCTCTGCGGCCGCCTTTTGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : TCAAAATTGTATCTTTCCCCATTTTCTCAACCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGCAAATTCTGGAAGGTGTTGCCGTTGGACTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCTTTGTCATCACTCCGTTACAATGTCATTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACGAATTATCGAAGAAGTATGGTACGAATTTGGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAACACACAG # Questionable array : NO Score: 5.47 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.90,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 6 129939-129707 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 129938 33 84.8 33 NNNNN............................ CTTGATTCGTGCATCACAAAATTCGATAGGAGT 129872 33 100.0 34 ................................. ATTTCAAGTCTCCGGGAAGGTTGTTTAGGAGCTT 129805 33 100.0 33 ................................. TGTTGGCTATACGCTCTGCGGCCGCCTTTTGCT 129739 33 84.8 0 T............................NNNN | ========== ====== ====== ====== ================================= ================================== ================== 4 33 92.4 34 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CGGCTGTGTGTTGAAACTTTAAAATCCTCAGATACATTTGTGAAACCGGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCAAATCGGCGGCGTGCCGGTCACTCTTTATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGGGGCTTGCGCCCCCTGTTTTTATTTGGTGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACTCTGGCAAGTCGCCCACATCCTGCCCCACGACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGTTTCAGACGCAGTTGTGACCAGTCTTTACCGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGGTTGATGCGCGCGCCGTAGATTTCGGGGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTCAAAATTGTATCTTTCCCCATTTTCTCAACCTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGCCGCCTTCGGGCGGCTGTGTGTTGAAACACGGCAAATTCTGGAAGGTGTTGCCGTTGGACTTACCAGCCGCCTTCGGG # Questionable array : NO Score: 5.48 # Score Detail : 1:0, 2:3, 3:0, 4:0.62, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 7 130263-130031 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 130262 33 87.9 34 NNNN............................. CAGCAAATCGGCGGCGTGCCGGTCACTCTTTATC 130195 33 100.0 33 ................................. TGGGGCTTGCGCCCCCTGTTTTTATTTGGTGTC 130129 33 100.0 33 ................................. CACTCTGGCAAGTCGCCCACATCCTGCCCCACG 130063 33 87.9 0 A.............................NNN | ========== ====== ====== ====== ================================= ================================== ================== 4 33 93.9 34 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTTCGGCGGCGCTGCCTGTTTCTTTAGGCTTTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTTTTCAGCCTTTGCCAAGGCCGCTTTCAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTCATGCGCCGGTGTGAATTTAAGGGTGTTCTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTGCTTTTCTTACTTGTACAAAATCACCAATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTAAAATCCTCAGATACATTTGTGAAACCGGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGATTCGTGCATCACAAAATTCGATAGGAGTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTCAAGTCTCCGGGAAGGTTGTTTAGGAGCTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTGGCTATACGCTCTGCGGCCGCCTTTTGCTTCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGTTTCAGACGCAGTTGTGACCAGTCTTTACCGGCCAGCCGCCTTCGGGC # Questionable array : NO Score: 5.56 # Score Detail : 1:0, 2:3, 3:0, 4:0.70, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,-0.80] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 8 130720-130353 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 130719 35 82.9 32 NNN.............................CTT TCGGCGGCGCTGCCTGTTTCTTTAGGCTTTCG 130652 35 100.0 31 ................................... TTTTCAGCCTTTGCCAAGGCCGCTTTCAAGA 130586 35 97.1 31 ..................................T CATGCGCCGGTGTGAATTTAAGGGTGTTCTA 130520 35 100.0 32 ................................... TGCTTTTCTTACTTGTACAAAATCACCAATTC 130453 35 94.3 31 .................................TT AAAATCCTCAGATACATTTGTGAAACCGGAA 130387 35 82.9 0 .............................NNNNNN | ========== ====== ====== ====== =================================== ================================ ================== 6 35 92.9 32 CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGC # Left flank : GGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCATTAACGGTCGATATGAGCGGCTTATGCCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGTGTGGCCGCTGGTGTCCGTTACGCCTTTACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCCGACGTGGTCGGCTCGGAATTTGAGCTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCAAGATAGCGTAAGCAGACGGTGGGATACCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACCAGCAAATCGGCGGCGTGCCGGTCACTCTTTATCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGGGGCTTGCGCCCCCTGTTTTTATTTGGTGTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCACTCTGGCAAGTCGCCCACATCCTGCCCCACGACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGATTCGTGCATCACAAAATTCGATAGGAGTCCCAGCCGCCTTCGGGCGGC # Questionable array : NO Score: 5.91 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.28 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 9 131043-130814 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 131042 33 97.0 32 A................................ CCGTGTGGCCGCTGGTGTCCGTTACGCCTTTA 130977 33 97.0 32 C................................ GGCCGACGTGGTCGGCTCGGAATTTGAGCTTG 130912 33 100.0 33 ................................. CATCAAGATAGCGTAAGCAGACGGTGGGATACC 130846 33 90.9 0 ..............................NNN | ========== ====== ====== ====== ================================= ================================= ================== 4 33 96.2 33 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAGACATCTCCGAATTAACGTTGGTGTCTGTTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATCGATAATGGTTCAGGCACCGTTATTAGTGCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCTGCCAGTAAGTCACCGCCCTCTTCAATAATCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCATTAACGGTCGATATGAGCGGCTTATGCCA # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACCTTTCGGCGGCGCTGCCTGTTTCTTTAGGCTTTCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTTTTCAGCCTTTGCCAAGGCCGCTTTCAAGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTCATGCGCCGGTGTGAATTTAAGGGTGTTCTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCTGCTTTTCTTACTTGTACAAAATCACCAATTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTAAAATCCTCAGATACATTTGTGAAACCGGAACCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 10 131433-131201 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 131432 33 84.8 34 NNNNN............................ AAAGACATCTCCGAATTAACGTTGGTGTCTGTTT 131365 33 100.0 34 ................................. TATCGATAATGGTTCAGGCACCGTTATTAGTGCG 131298 33 97.0 32 C................................ ATCTGCCAGTAAGTCACCGCCCTCTTCAATAA 131233 33 84.8 0 T............................NNNN | ========== ====== ====== ====== ================================= ================================== ================== 4 33 91.7 34 ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGTGCAGCTAAGGCTTACGGCTGCCGTGTTTGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAGTATGGCAACAGTATTATCCGGATGGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCGGTAGGACATTATCAGTACAAATGGCTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCATTAACGGTCGATATGAGCGGCTTATGCCAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCCGTGTGGCCGCTGGTGTCCGTTACGCCTTTACCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGCCGACGTGGTCGGCTCGGAATTTGAGCTTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCATCAAGATAGCGTAAGCAGACGGTGGGATACCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGC # Questionable array : NO Score: 5.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.59, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 11 131754-131590 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 131753 33 87.9 33 NNNN............................. GAGTGCAGCTAAGGCTTACGGCTGCCGTGTTTG 131687 33 97.0 32 A................................ CGAGTATGGCAACAGTATTATCCGGATGGTTT 131622 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================= ================== 3 33 95.0 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : GGGCGGCTGTGTGTTGAAACCGCCAATCTTCGCCGAGCTTCCCGTACTTCTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCGGGCGGCTGTGTGTTGAAACAATTAATCGCGCAATGCCTGAACCATTTGCATTAACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTGCTCCGTTTAGTTTGGTAGGCCGTCTGAAATACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTTTTATAAAACGGGAGGGCGCGTGAGATTACCCCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : GGTCGGTAGGACATTATCAGTACAAATGGCTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAGACATCTCCGAATTAACGTTGGTGTCTGTTTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATCGATAATGGTTCAGGCACCGTTATTAGTGCGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATCTGCCAGTAAGTCACCGCCCTCTTCAATAATCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGC # Questionable array : NO Score: 5.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [41.7-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [1.05,4.87 Confidence: MEDIUM] # Array family : I-C [Matched known repeat from this family], // Array 12 132400-131847 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ========================================================================================= ================== 132399 33 100.0 33 ................................. AACATCATCAATTCTGCTCGTACCCAAGAATTG 132333 33 100.0 34 ................................. AACCTTTGGTAAATAATATCGAGTTCAGGGATCC 132266 33 100.0 32 ................................. CGCCAATCTTCGCCGAGCTTCCCGTACTTCTT 132201 33 90.9 89 ..............................NNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 132079 33 75.8 34 NNNNNNNN......................... AATTAATCGCGCAATGCCTGAACCATTTGCATTA 132012 33 97.0 33 A................................ TTGCTCCGTTTAGTTTGGTAGGCCGTCTGAAAT 131946 33 97.0 34 A................................ ATTTTTATAAAACGGGAGGGCGCGTGAGATTACC 131879 33 87.9 0 C.............................NNN | ========== ====== ====== ====== ================================= ========================================================================================= ================== 8 33 93.6 41 GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : CGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACACAATCTCGGCCTGATTCTCAACCCAGATTTCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTCTTGAACGAGCCTGCACCAATGGTAATTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTAAGATACAGATAAGATAACAGATGATTCATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGTGATTGTTGAGTAATGACAGCCGGAAAGCC # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACGAGTGCAGCTAAGGCTTACGGCTGCCGTGTTTGACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGAGTATGGCAACAGTATTATCCGGATGGTTTCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACGGTCGGTAGGACATTATCAGTACAAATGGCTGACCCAGCCGCCTTCGGGCGGCTGTGTGTTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACAAAGACATCTCCGAATTAACGTTGGTGTCTGTTTACCAGCCGCCTTCGGGCGG # Questionable array : NO Score: 5.26 # Score Detail : 1:0, 2:3, 3:0, 4:0.68, 5:0, 6:0.25, 7:-0.67, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,2] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 13 132723-132559 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 132722 33 100.0 32 ................................. ATTCTTGAACGAGCCTGCACCAATGGTAATTG 132657 33 100.0 33 ................................. TATTAAGATACAGATAAGATAACAGATGATTCA 132591 33 90.9 0 T..............................NN | ========== ====== ====== ====== ================================= ================================= ================== 3 33 97.0 33 CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACCATGTCGCTTAGTCTTTTTATCGCATGGCGATGGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGCGCCTCATCGCGCATCTTGATTTGCTTCTCCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTTTCAAAAATAATTATGGAACGCTGCAATTACTACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGTTCCATCACTGTTCTTATAAGTCCAATCTGTCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACACAATCTCGGCCTGATTCTCAACCCAGATTTCAG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGTGATTGTTGAGTAATGACAGCCGGAAAGCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACATCATCAATTCTGCTCGTACCCAAGAATTGGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACAACCTTTGGTAAATAATATCGAGTTCAGGGATCCGCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACCGCCAATCTTCGCCGAGCTTCCCGTACTTCTTGCCAGCCGCCTTCGGGCGGCTGTGTGTTGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCTTCGGGCGGCT # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched TCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 14 133113-132880 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV828085.1 Neisseria sp. HMSC056A04 Scaffold523, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ================================ ================== 133112 35 97.1 32 ..................................C GCCTCATCGCGCATCTTGATTTGCTTCTCCCG 133045 35 97.1 31 .................................T. CAAAAATAATTATGGAACGCTGCAATTACTA 132979 35 100.0 30 ................................... TCCATCACTGTTCTTATAAGTCCAATCTGT 132914 35 82.9 0 .............................NNNNNN | ========== ====== ====== ====== =================================== ================================ ================== 4 35 94.3 31 CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGT # Left flank : AACCCCGAAACCGACAGCCTGCGCTTTTACCATCTGGGCAGCAAATGGCGGCGGAAAGTGGAACACCACGGCGCAAAACCGACGGTGGATGTGTTTAAGGATACGTTGATTGTGTGAATCGCCAACCTGTTGTTCTCATGAAAATGTGGCAGGATTAGCGAATTAGGATTGTTCTTTAACAATCAGGATATTGCAAATGTGGGTATAACAGAAAAGGCTGTGTTATACTCGCATTTCTGCTTTTCTTGAGAGTTTAGCGAGATTAGGCTTGCGAAACCTGATGTAGCAAGGCTTTTGAGAGAGGCACCAGCCGCCTTCGGGCGGCTGTGTGTTGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCGCCTTCGGGCGGCTGTGTGTTGAAACCATGTCGCTTAGTCTTTTTATCGCATGGCGATGGG # Right flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCGCCTTCGGGCGGCTGTGTGTTGAAACACAATCTCGGCCTGATTCTCAACCCAGATTTCAGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACATTCTTGAACGAGCCTGCACCAATGGTAATTGCCCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTATTAAGATACAGATAAGATAACAGATGATTCATCCAGCCGCCTTCGGGCGGCTGTGTGTTGAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCGCCTTCGGGCGGCTGTGTGTTGAAACCTTGTGATTGTTGAGTAATGACAGCCGGAAAGCCGCCAGCCGCCTTCGGGCGGC # Questionable array : NO Score: 5.57 # Score Detail : 1:0, 2:3, 3:0, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCAGCCGCCTTCGGGCGGCTGTGTGTTGAAACTGA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.20,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //