Array 1 54409-55831 **** Predicted by CRISPRDetect 2.4 *** >NZ_ADFU01000012.1 Veillonella parvula ATCC 17745 contig00016, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 54409 36 100.0 31 .................................... TGTGTACCTACAATAATAGGTATCGGTAATA 54476 36 100.0 30 .................................... CTCTAGTACCACCTACTTCAAGTACGAATA 54542 36 100.0 30 .................................... CGTTATTTTGTTTTTTTGCAGTTGCCATAA 54608 36 97.2 30 .................C.................. TTCTACAACTGCCGTTCTATCGCTTTTTTC 54674 36 100.0 30 .................................... CGTAAAAGATTTGTATTCTGAACATACAGG 54740 36 100.0 30 .................................... ATACTGATAGTTCTTCAATCCCTCTAGCGA 54806 36 100.0 30 .................................... AATGCCAATAGACATCATCAAAGCATCCTG 54872 36 100.0 30 .................................... ACAATCATAGGGTCTTCAACCATCATGCTG 54938 36 100.0 30 .................................... TGTATCAGCGCTGATAGTGTCAACCTGTGC 55004 36 100.0 30 .................................... CTATCGATTTGATATAAGTCAAAATCATAT 55070 36 100.0 30 .................................... GGAAGCATCATTCATGTGATGCACCAAATC 55136 36 100.0 30 .................................... TCTTATGCTCTCCTTTAGTGGAACGTAAGG 55202 36 100.0 30 .................................... AGACCGATACACGTATACTGGGGGCAGCTC 55268 36 100.0 30 .................................... GATCTACAAGAGTGGTAATCGACCCTACCG 55334 36 100.0 30 .................................... ATCAGAATACTCAGCGACTCAAACAAGACG 55400 36 100.0 30 .................................... GATGAAAGGGGAGATACATTCCGCAATAGG 55466 36 100.0 30 .................................... AAAACTACAGGATATGAACCGAGCTTTCTG 55532 36 100.0 30 .................................... GTTTCCTCAAGAACTGTGTCTTCTTCAACC 55598 36 100.0 30 .................................... AAGTACCATTTGTTACGATAGACATCATAA 55664 36 100.0 30 .................................... AACTACAAGCAGGAGCATGCAAATGCATCT 55730 36 97.2 30 ...................................T GCGATTGGGATTATGCAAAACTAGCAGAGG 55796 36 97.2 0 ...............G.................... | ========== ====== ====== ====== ==================================== =============================== ================== 22 36 99.6 30 GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Left flank : AACCAAATTACAAAATCAATTATCTAAAGAAGCCTTGTTGATGACAGAAGAGGTGGCAGATATTGTAAATCGTCTTCATGCTTTTTATTATTCTTTAGAATTTGGATATCCTTTATCAATCCAACATAAACTTGAAATTGGTACTGCTGAACTTATTAAGTTAGGTAGCTTTAACTTTGAGTTTAATCGTACAGGGGATATTATGGATTTCATGTCCTACATAGAAGTGGTTGATAAATTATTATCTCCCATGGTATATATTATGGTAAATCTAGATTTAGTTTTAAATGATGATGAGATTAATGCATTTTATCACAACATGTTGAGTAGACAATTACGATTAGTTTGTTTAACGACAGGATCTTTTGTTAAAGAAAATCTTGATAAAAGTCTTATTAATGGGTATATTTTAGATAATGATTTTTGTGTTATTTAAGGAGTATACAGAATTACACCTGGTGGTAGCCCGAGTTACTCTTGAGCCTCAAATTTAATTTGGG # Right flank : CGAGCAAATTAGATCCTTCTTTAAAGATTTGGTTTGAGAGTAATGTAATTAGAATTTAGTAGATTATAAATTTGTGAAACGACATAAAAAGCCGAGCTACCTTGTTTTAGTAGCTCGGCTTTATTTGTTAATTTATATATTTATATAATATGATGCTTATTGTATCGTATATTAGTTCGCTCTATAATAGATTTAGGATAGTTAGACGAGGTTGGGACTCTCTTCGTTTTTGAAGGGAGGGATAAGTCTATGAGCGATTATGAAATAATCATGCTCCTGTTACAAGTAATGGCTATTGTTATTGCTTTTGGGGCTTTAATAGCACTTATTTGCCTTACAAGAAGCAAATAGCCCTCCGTTGCCTAGTGTAACTAGATAACTGAAAGGCCATTTCCTAATGTTTTACTGATTTAGAGATGAGCCTGACGGTACTACTCGTCTGACTATCTACCTATATTATAGGGATAAAGATTTATATCGTCAAATTGAGATAAACCTTA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGAGAGTAGTGTAATTCTGTAAACCTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.90,-2.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA //