Array 1 474647-475771 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPK01000003.1 Salmonella enterica subsp. enterica serovar Newport strain SL_24_113 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 474647 29 100.0 32 ............................. TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA 474708 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 474769 29 100.0 32 ............................. CACAAAACGCCAGTGGCATGGTACAACCCGTA 474830 29 100.0 32 ............................. GCGTGACCATGTTTAACTCTAAATCAGGCCGT 474891 29 100.0 32 ............................. TCATGCTTTCGACTAAATACTACCGCGACAAC 474952 29 100.0 32 ............................. AAAATAACAACATTATCAGTGTGAAAAGTCTC 475013 29 100.0 32 ............................. TGAAGAACGGCCAGCCCGTCGAGGTATCAATC 475074 29 100.0 32 ............................. CGTTGTCGTTGCTGGACAGAACTCCGGGGACG 475135 29 100.0 32 ............................. TACGGGCATGGACGGCTCGTACAGTTTTGACG 475196 29 100.0 32 ............................. TGCTCCGCTTCTGGTAGTGCTTCCAGACCCTC 475257 29 100.0 32 ............................. CAATAGGACAGCCATTCGAGCGCCCAGAGTTT 475318 29 100.0 32 ............................. GTCAGTATGCACTGCTTGATAAAGTCAGGCCA 475379 29 100.0 32 ............................. AACTAACGTCTATAGCTAAATGTAGAGAAAAC 475440 29 100.0 32 ............................. CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA 475501 29 100.0 32 ............................. TAAAAATCTTCTTTCATATAACCGTAAGGGTT 475562 29 100.0 32 ............................. CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC 475623 29 93.1 32 ........T...................C AGCACAATCATTATTAGATGAACTTTCATCAA 475684 28 96.6 32 ............-................ GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT 475744 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 19 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACTTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTAATGCTGATAAAAAGTAGTTTATAAACAATGATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGGCCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-8] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [73.3-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 483716-485495 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMPK01000003.1 Salmonella enterica subsp. enterica serovar Newport strain SL_24_113 contig00003, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 483716 29 100.0 32 ............................. TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG 483777 29 100.0 32 ............................. TTGATTTACCCGCCACTTATTCCCCATTGCAT 483838 29 96.6 32 ..........................T.. GGACTATCAAACCATCTATGATGCCAATTTTA 483899 29 100.0 32 ............................. CGCGGGGCTGGTATTCGATACAGACCCGGCTA 483960 29 100.0 32 ............................. GGAATAAAAATGAATTTGAGTCAACTCTATAA 484021 29 100.0 32 ............................. CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA 484082 29 100.0 32 ............................. ATTATCCCGGAAATCGTGATCAACTACGCAGG 484143 29 100.0 32 ............................. GCATTCCCGATCGTCAACCAGAGAACTGGCAC 484204 29 100.0 32 ............................. AAACCCGCGCCCGTGAGCTCGATATGCTCGGC 484265 29 100.0 32 ............................. ATTGTTATTGCGGTAACGGATAATTTATCATT 484326 29 100.0 32 ............................. GACTCGGCCTGTTTTTTGATTTTGACAATCAG 484387 29 100.0 32 ............................. CCAATAACCGACGAGGGCAAACGCCGTGCGCG 484448 29 100.0 32 ............................. CAGACGAAAATCAGCCCGCATATTCCGACACA 484509 29 100.0 32 ............................. AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC 484570 29 100.0 32 ............................. ATTAAACAACAGGATTTTGCAATTACTGTTGG 484631 29 100.0 32 ............................. CAGACGGCAGCAGCGTGAAACACGTCAGTATT 484692 29 96.6 32 ............................A CCAATAACCGAAATATCCACGGTGGAAATTTC 484753 29 100.0 32 ............................. TCAGCTGTTCCATACTCACCCCCTGTGCAATC 484814 29 100.0 32 ............................. GCGATGTATGCCGCGACGATCGAGAGCGAACT 484875 29 100.0 32 ............................. CAGCAGATGAAAAATATTTACAGATTGGTAAA 484936 29 100.0 32 ............................. GGGCGAAAACGCGCTTTGAAATTCGCACGGTC 484997 29 100.0 32 ............................. AAAAAATCCCGCTGACAATATTTTGCCACCTC 485058 29 100.0 32 ............................. CCGGACGACCCGATGGGGATCCTGCCGTTGCT 485119 29 100.0 74 ............................. GGAGTATTTGAAATGTACTATAAGGACTTCATGTGTTCCCCGCGCCAGTTCTTCAGCTGGCAACGACAGAATGC 485222 29 100.0 32 ............................. GGGGCTTGTTAATATTTCTCTCACTGACTACG 485283 29 100.0 32 ............................. CCGGAAAACTATCTCTATCGCAGGCTGGATAT 485344 29 100.0 32 ............................. TTCCAAAGGTACTCCCATATCTCCAGCCAACG 485405 29 100.0 32 ............................. TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC 485466 29 100.0 0 ............................. | A [485493] ========== ====== ====== ====== ============================= ========================================================================== ================== 29 29 99.8 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GCAAATGGTCGTTTTTTTAAATTTTGGTTTGTCATGAATGGTGTTGATGCTGAGAGATAAAGTATGATGAAATGAAGTAGTTAAATTTAATTAATTAATGGTATTCATGGAAATGGATGTAGATAGAGAAGCTGCAAAGATTTTAGTGAATCTAATGTAATAACTTCTCTATACAACGGAGTTAGAATAATACCCGTTATCCAACCAATCCAAAACGTTTACTATAATAGCTAGCTTCTCCGGCATCAGATACCAGCACAACCTGTCCGGAAGGGCGATGGTGGCGTTTTCTGAAACAGGCTAATGTTTCCTCATCTGGACATTGGAATGTACCAGAATTTTTTTGCCACCATGATTTTCGGACGGATAAGCGACTTTTTTCCCAGCAGAAATCTATTTCATCAACTAAAGGGCGTAGCTGTCCATTAATGTCTTTTCTGGCGAGATAAACATCAACACTCTCTTCACCCAGACGGGTAGAAAATTCTCTATCTTTATCC # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAGAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCTCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //